mRNA_C-linearis_contig10.668.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.668.1
Unique NamemRNA_C-linearis_contig10.668.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.668.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:3548877..3549253 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-20_000500.1
Exons2
Model size195
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927352.0837789-CDS-C-linearis_contig10:3548876..35489811622927352.0837789-CDS-C-linearis_contig10:3548876..3548981Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3548877..3548981 +
1690879646.3093805-CDS-C-linearis_contig10:3548876..35489811690879646.3093805-CDS-C-linearis_contig10:3548876..3548981Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3548877..3548981 +
1622927352.0952065-CDS-C-linearis_contig10:3549163..35492531622927352.0952065-CDS-C-linearis_contig10:3549163..3549253Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3549164..3549253 +
1690879646.3216398-CDS-C-linearis_contig10:3549163..35492531690879646.3216398-CDS-C-linearis_contig10:3549163..3549253Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3549164..3549253 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.668.1prot_C-linearis_contig10.668.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 3548877..3549253 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.668.1

>prot_C-linearis_contig10.668.1 ID=prot_C-linearis_contig10.668.1|Name=mRNA_C-linearis_contig10.668.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=65bp
SGSDVASITINGCDFKEDDALLRFARVRSAGDFAKLLGAVGCFSPCQGVR
RKHLVEDLSLTPNTA
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mRNA from alignment at C-linearis_contig10:3548877..3549253+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.668.1 ID=mRNA_C-linearis_contig10.668.1|Name=mRNA_C-linearis_contig10.668.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=377bp|location=Sequence derived from alignment at C-linearis_contig10:3548877..3549253+ (Chordaria linearis ClinC8C monoicous)
AGTGGGAGCGATGTTGCGTCCATCACGATCAACGGCTGCGACTTCAAAGA
AGACGACGCTCTCCTACGCTTTGCCCGTGTCCGTTCCGCGGGGGATTTCG
CAAAGGTTAGCAAGAAAGCCCATGGCCGAGTTGACATTACATCTCTAGGT
TGGATGGATTGTACCTACCTTGGGAAACACCACGTATGTAGGCCGTAGGC
GTTCGAGTCCCAACACTCATACTTTTTTTTTCTCTTGGCGTGCGTCCGTT
GATACGCGTCTTCCTTCCTTCTCGTTTATCTTTGTAGCTTCTGGGCGCTG
TCGGATGCTTCAGCCCTTGCCAGGGCGTTCGCCGCAAGCACCTTGTGGAG
GATCTGTCGTTGACCCCCAACACGGCG
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Coding sequence (CDS) from alignment at C-linearis_contig10:3548877..3549253+

>mRNA_C-linearis_contig10.668.1 ID=mRNA_C-linearis_contig10.668.1|Name=mRNA_C-linearis_contig10.668.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at C-linearis_contig10:3548877..3549253+ (Chordaria linearis ClinC8C monoicous)
AGTGGGAGCGATGTTGCGTCCATCACGATCAACGGCTGCGACTTCAAAGA
AGACGACGCTCTCCTACGCTTTGCCCGTGTCCGTTCCGCGGGGGATTTCG
CAAAGAGTGGGAGCGATGTTGCGTCCATCACGATCAACGGCTGCGACTTC
AAAGAAGACGACGCTCTCCTACGCTTTGCCCGTGTCCGTTCCGCGGGGGA
TTTCGCAAAGCTTCTGGGCGCTGTCGGATGCTTCAGCCCTTGCCAGGGCG
TTCGCCGCAAGCACCTTGTGGAGGATCTGTCGTTGACCCCCAACACGGCG
CTTCTGGGCGCTGTCGGATGCTTCAGCCCTTGCCAGGGCGTTCGCCGCAA
GCACCTTGTGGAGGATCTGTCGTTGACCCCCAACACGGCG
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