mRNA_C-linearis_contig10.666.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.666.1
Unique NamemRNA_C-linearis_contig10.666.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.666.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:3534269..3534537 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size240
Cds size120
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.666.1prot_C-linearis_contig10.666.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 3534354..3534502 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927325.2140093-UTR-C-linearis_contig10:3534268..35343531622927325.2140093-UTR-C-linearis_contig10:3534268..3534353Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 3534269..3534353 -
1690879627.3990014-UTR-C-linearis_contig10:3534268..35343531690879627.3990014-UTR-C-linearis_contig10:3534268..3534353Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 3534269..3534353 -
1622927325.2442513-UTR-C-linearis_contig10:3534502..35345371622927325.2442513-UTR-C-linearis_contig10:3534502..3534537Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 3534503..3534537 -
1690879627.445213-UTR-C-linearis_contig10:3534502..35345371690879627.445213-UTR-C-linearis_contig10:3534502..3534537Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 3534503..3534537 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927325.222425-CDS-C-linearis_contig10:3534353..35343651622927325.222425-CDS-C-linearis_contig10:3534353..3534365Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3534354..3534365 -
1690879627.4232981-CDS-C-linearis_contig10:3534353..35343651690879627.4232981-CDS-C-linearis_contig10:3534353..3534365Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3534354..3534365 -
1622927325.2310615-CDS-C-linearis_contig10:3534394..35345021622927325.2310615-CDS-C-linearis_contig10:3534394..3534502Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3534395..3534502 -
1690879627.4344103-CDS-C-linearis_contig10:3534394..35345021690879627.4344103-CDS-C-linearis_contig10:3534394..3534502Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3534395..3534502 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.666.1

>prot_C-linearis_contig10.666.1 ID=prot_C-linearis_contig10.666.1|Name=mRNA_C-linearis_contig10.666.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=40bp
MNTHAYTRCSSQRTASHPRHAISQTQCETRNNGKDRYGI*
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mRNA from alignment at C-linearis_contig10:3534269..3534537-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.666.1 ID=mRNA_C-linearis_contig10.666.1|Name=mRNA_C-linearis_contig10.666.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=269bp|location=Sequence derived from alignment at C-linearis_contig10:3534269..3534537- (Chordaria linearis ClinC8C monoicous)
TGCTGTCGGTGGTAGATGTTTGTAGGATCTAGCTAATGAACACACACGCA
TACACACGTTGCTCCTCCCAGAGGACCGCATCTCATCCCCGTCATGCGAT
AAGCCAAACACAATGTGAAACAAGAAATAACGGAAAAGACAGGGTGGTTG
CAACAACCACCTGACTTATAAGTACGGAATATAAAAAACTGAAAATGTAA
CCATGAGCAAAAAATGCCACATCATGCTCAGCGACACGTTTACCATTGCA
GTCCCAACAACGCTGTTAT
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Coding sequence (CDS) from alignment at C-linearis_contig10:3534269..3534537-

>mRNA_C-linearis_contig10.666.1 ID=mRNA_C-linearis_contig10.666.1|Name=mRNA_C-linearis_contig10.666.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=240bp|location=Sequence derived from alignment at C-linearis_contig10:3534269..3534537- (Chordaria linearis ClinC8C monoicous)
ATGAACACACACGCATACACACGTTGCTCCTCCCAGAGGACCGCATCTCA
TCCCCGTCATGCGATAAGCCAAACACAATGTGAAACAAGAAATAACGGAA
AAGACAGGATGAACACACACGCATACACACGTTGCTCCTCCCAGAGGACC
GCATCTCATCCCCGTCATGCGATAAGCCAAACACAATGTGAAACAAGAAA
TAACGGAAAAGACAGGTACGGAATATAATACGGAATATAA
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