mRNA_C-linearis_contig10.662.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.662.1
Unique NamemRNA_C-linearis_contig10.662.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.662.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:3487059..3488391 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size321
Cds size321
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.662.1prot_C-linearis_contig10.662.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 3487059..3488391 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927351.2498446-CDS-C-linearis_contig10:3487058..34871391622927351.2498446-CDS-C-linearis_contig10:3487058..3487139Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3487059..3487139 -
1690879645.8956306-CDS-C-linearis_contig10:3487058..34871391690879645.8956306-CDS-C-linearis_contig10:3487058..3487139Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3487059..3487139 -
1622927351.262263-CDS-C-linearis_contig10:3487394..34875291622927351.262263-CDS-C-linearis_contig10:3487394..3487529Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3487395..3487529 -
1690879645.9069104-CDS-C-linearis_contig10:3487394..34875291690879645.9069104-CDS-C-linearis_contig10:3487394..3487529Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3487395..3487529 -
1622927351.2716253-CDS-C-linearis_contig10:3488286..34883911622927351.2716253-CDS-C-linearis_contig10:3488286..3488391Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3488287..3488391 -
1690879645.9151585-CDS-C-linearis_contig10:3488286..34883911690879645.9151585-CDS-C-linearis_contig10:3488286..3488391Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3488287..3488391 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.662.1

>prot_C-linearis_contig10.662.1 ID=prot_C-linearis_contig10.662.1|Name=mRNA_C-linearis_contig10.662.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=107bp
VCWCAGVSFRAGCVPAAGMAERGVPEALDVEHFAQARIQEIEFLDAAVAA
VSNNGGGDDGGTLGGDGRPLSTPVGGLRDQAQGLPRHMRRRTTSHKPRRM
PVALKNN
back to top

mRNA from alignment at C-linearis_contig10:3487059..3488391-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.662.1 ID=mRNA_C-linearis_contig10.662.1|Name=mRNA_C-linearis_contig10.662.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1333bp|location=Sequence derived from alignment at C-linearis_contig10:3487059..3488391- (Chordaria linearis ClinC8C monoicous)
GTGTGCTGGTGTGCTGGTGTGTCGTTCAGAGCTGGGTGTGTGCCTGCAGC
TGGTATGGCTGAACGGGGCGTTCCCGAGGCGCTGGATGTGGAACACTTCG
CGCAGGTGCGTTCAAAACGTGTGTCTGGGCTGAGGAGAGAGAACGACGTG
CCTAGACCGCCATGAATTTTGTTCCGAAAAGTTGAACAGCAGAGACAGCC
AGAGAGACCAATTCTTTGATGCTTGACTCCTGTAAGGGTAGGTTGGTGCG
TGTGCAGCAGTGCGTGGACACACCGTGTTGGTGTATGAGAAAAAAACTGC
AGCAGGCTCGTGCGCTCGTAAGGTGTGGGGGGAGGGTGGGGGTAGAGTGA
CGCGGCAGTCCTGCTGCTGCTGTGCACTGGCTGCCGCAGGATGACTTGGG
CTGACCGCCCTCTCTCTCGCACACACGCACATGCAATCTGTGGGCTTTGG
TTTGGTGACCACGACAGCATTGGTGACACCCCCGTCGACGAGTTGGGGTC
CCTCATCTTATAGCTTATCCTGTAGGGTTTTCCCTGGAGTTGCATTTCCT
GCTTCGCAACCAGGCGGTGGGTGGGTGTAACTCGAGTGCCGGGTCCGAAA
ACCCACATATCGGGGTTGATCGCCTGGTTGAACATGAACACAAATGCTGG
CGTGGATTCTAGTCTACTGTAGGATTGGCTTGCATGCGAGCCCACCTAAA
CTGGCAAACATTGGCGATGTCCCTTTTGTGTAGGGGTAGAAACGGGTGCT
CTGTCTTGAAAAGATCAGATTTTGTCGAGAAATCTGAGCAGCTATGGGCA
AGGACGGCCCCATCTCAATAATGCCCTCTCCCCCCGGGGCGCCCCTTCTT
CGCCTGATGCAGGCGCGTATCCAAGAGATCGAGTTTCTAGATGCAGCGGT
TGCAGCAGTCTCCAACAATGGCGGTGGCGACGATGGGGGCACCTTGGGGG
GTGATGGCAGGCCATTATCGACACCTGTTGGCGGGCTGCGCGATCAGGTG
TGCCAGTCCTTGCATGGTTTACTTATGCTTGCAGCGTCCCCACTCGTGCG
AGAGGGGGAGGGTGGCGGGGTCTGGGGGTTCGGGGCTAGGAGGGATAGAA
AGACCTCCAAGACGTGTCAGGATTTTTTGTTTTTGCATGTAGACGTGGTG
GTTGTTTTCAATTTCAGTTTCAATTATTGCAGGCGTTCGTTGACTCTTGG
CCTAAGCCCCGTTCCCCACCGCCGAAACAACCGCACATGGAATAATACCC
AGGCGCAGGGCCTGCCGAGACACATGCGGAGGCGCACGACCTCGCACAAA
CCGCGCCGCATGCCCGTGGCGCTCAAGAACAAC
back to top

Coding sequence (CDS) from alignment at C-linearis_contig10:3487059..3488391-

>mRNA_C-linearis_contig10.662.1 ID=mRNA_C-linearis_contig10.662.1|Name=mRNA_C-linearis_contig10.662.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at C-linearis_contig10:3487059..3488391- (Chordaria linearis ClinC8C monoicous)
GTGTGCTGGTGTGCTGGTGTGTCGTTCAGAGCTGGGTGTGTGCCTGCAGC
TGGTATGGCTGAACGGGGCGTTCCCGAGGCGCTGGATGTGGAACACTTCG
CGCAGGTGTGCTGGTGTGCTGGTGTGTCGTTCAGAGCTGGGTGTGTGCCT
GCAGCTGGTATGGCTGAACGGGGCGTTCCCGAGGCGCTGGATGTGGAACA
CTTCGCGCAGGCGCGTATCCAAGAGATCGAGTTTCTAGATGCAGCGGTTG
CAGCAGTCTCCAACAATGGCGGTGGCGACGATGGGGGCACCTTGGGGGGT
GATGGCAGGCCATTATCGACACCTGTTGGCGGGCTGCGCGATCAGGCGCG
TATCCAAGAGATCGAGTTTCTAGATGCAGCGGTTGCAGCAGTCTCCAACA
ATGGCGGTGGCGACGATGGGGGCACCTTGGGGGGTGATGGCAGGCCATTA
TCGACACCTGTTGGCGGGCTGCGCGATCAGGCGCAGGGCCTGCCGAGACA
CATGCGGAGGCGCACGACCTCGCACAAACCGCGCCGCATGCCCGTGGCGC
TCAAGAACAACGCGCAGGGCCTGCCGAGACACATGCGGAGGCGCACGACC
TCGCACAAACCGCGCCGCATGCCCGTGGCGCTCAAGAACAAC
back to top