mRNA_C-linearis_contig10.656.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.656.1
Unique NamemRNA_C-linearis_contig10.656.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.656.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:3351965..3353875 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size716
Cds size498
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.656.1prot_C-linearis_contig10.656.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 3351965..3353658 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927325.096922-CDS-C-linearis_contig10:3351964..33523351622927325.096922-CDS-C-linearis_contig10:3351964..3352335Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3351965..3352335 -
1690879627.3205738-CDS-C-linearis_contig10:3351964..33523351690879627.3205738-CDS-C-linearis_contig10:3351964..3352335Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3351965..3352335 -
1622927325.1175828-CDS-C-linearis_contig10:3353531..33536581622927325.1175828-CDS-C-linearis_contig10:3353531..3353658Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3353532..3353658 -
1690879627.3336549-CDS-C-linearis_contig10:3353531..33536581690879627.3336549-CDS-C-linearis_contig10:3353531..3353658Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3353532..3353658 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927325.1278725-UTR-C-linearis_contig10:3353658..33538751622927325.1278725-UTR-C-linearis_contig10:3353658..3353875Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 3353659..3353875 -
1690879627.3444958-UTR-C-linearis_contig10:3353658..33538751690879627.3444958-UTR-C-linearis_contig10:3353658..3353875Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 3353659..3353875 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.656.1

>prot_C-linearis_contig10.656.1 ID=prot_C-linearis_contig10.656.1|Name=mRNA_C-linearis_contig10.656.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=166bp
MARTRAMNQQHPRGKQGGGAVGSSPSLKQLAQLAIVGICAGKGSTANAIP
PLPPPPATTTTTSSTATATLAFAPPPPPPSSSPAPRFSPASSFRAFRLAA
ANPAGGSSHRAVPRTASFSCMSSSPSPPFRDGASRGSSTGWGTGGGTGGG
RRRISSSPLRAAVGSL
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mRNA from alignment at C-linearis_contig10:3351965..3353875-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.656.1 ID=mRNA_C-linearis_contig10.656.1|Name=mRNA_C-linearis_contig10.656.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1911bp|location=Sequence derived from alignment at C-linearis_contig10:3351965..3353875- (Chordaria linearis ClinC8C monoicous)
CCCACGGCCGTGCGTCACACGCAAAAACACCTCACTGGTCTGGCACCCAC
CGCCGTGCGTACAGAGAGAGAGAGAGAGGTGCTGACGAAAAGTTGTGGCT
GGTCTATGCACTGTAGATGATCGACACGACGTGATCCGATTCACTCGAAG
CTTGCCGCACGCAAGCGAGGGGGGAAGGAGCTGGCAACTGGTAACACAAA
ATCAAATTTTCTCAAAAATGGCACGCACGCGCGCGATGAACCAACAACAT
CCACGCGGAAAGCAGGGGGGCGGAGCGGTCGGGTCATCGCCAAGCCTCAA
GCAGCTCGCACAGCTGGCCATCGTCGGCATATGCGCGGGCAAAGGTGTGT
GTCTGGAAGCAGTGCTTTTTTCTACCGAGCGTCGTTGGCAGAAACAGCAA
CGTTGGCCGCTCTGGTTTGGTTTTCAGTTTTCAGACTTTTGTCAACCTTC
AAACGCAATAGGTCATGATCAGGCCAGAGAGAGAGCGACTTGACGCGAGC
GTGCGCTTCTAGCGCCCGCAGAGGCCATGGGCCCCAGGCCGAAGCAACCG
CAGTGCGTAGTTCTCGGTAGACGTTCTCTCTGTGCACCGCCGTGGTGCTG
TATCGTCAGCAGGCTGAGCTCTATGTAGCGGGAATTAACGCACACACCCA
CCTACGTGTCGCCCGCAGATGAACGGACGGTTCTGCCTGGGCACGAAAAT
CAATTGGAGGGCAAAATTGAAATTTCTGAAGCAACCGCGGCGTTGTGTTG
CTATGTACTGTCATTACACTACCACCACATTCGTAGATGCAAGACATCTG
CCTTGTCCGTGCTATATTTTTCCTGAGACAAGCTAAAAATATTGACACCG
GGTACACATTTGAACTTTGAACGGACGGTCCAACAGGGCACACTTTTGCC
CGCACATGTATCCAGCCGCAGGACTGCATCGTAAGGCTGCCACCACGTCC
GCAAATGTAGTGCGATAGAGTGCTCCTTGGACAAGCTATATCTCGACCAT
CAGAAGTGCCGGACGCATGTGTAGCAGGCGAAAAAAACAGCCTTCCAGTC
GTCCTTTAGAATGGGAGGGAGCGGCCTCATGAACCTCATGAACCAGAAAC
GTTGCCTACTCCTACTCTGTACTTGGAAGTTCAAGTTTCCGATCAAACCG
GAAGGAACCACTCCTCCATACGAGTCGGAATCGGTCCTTTCCAGCCTAAA
CCGCCGTGTCCAGGTCGCGTCGACAGGCCGCAGTTGCACAAAACGCCTCT
GCGCGTTTCGTAGCCGTGCTTTGTGGTCCTGTGCTCTGCGAAGAGGTTCG
GCCGCACTGAGCGGGCGAGGGGGCGACTTCGTTGTTGATAGATATGGCGC
CCAACTGGCGTCATTTTGTCGCCTCTTTTTGCGACTCTCCCCTACGCTCA
AGCCGTTGTGTCTCCAGTCTCGTGCGGTGGGATACGGCAGACAGAAGTTT
TAGTGTTTGCTGTGCAGCTTGCCGCGGACGGCGGCCCGAGAATGTTTTTT
CACTCTTACCCCCAACCTCACGTCCCCGTCTCACCCGCAGGCTCAACGGC
TAACGCAATCCCGCCACTTCCACCACCACCAGCAACAACAACAACCACCA
GCAGCACCGCTACGGCGACGCTGGCGTTCGCGCCACCGCCGCCACCACCA
TCATCCTCCCCGGCCCCGCGCTTCTCTCCCGCCTCGTCCTTCCGGGCGTT
CCGCCTGGCCGCAGCAAACCCCGCCGGCGGCAGCAGCCACCGGGCCGTAC
CACGAACGGCCTCGTTTTCTTGCATGTCATCATCGCCATCCCCGCCGTTC
CGCGACGGCGCCAGCCGCGGAAGCAGCACCGGGTGGGGCACCGGCGGCGG
CACGGGGGGGGGGCGGCGAAGAATTTCTTCGTCCCCGCTGCGCGCAGCGG
TGGGGTCCCTG
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Coding sequence (CDS) from alignment at C-linearis_contig10:3351965..3353875-

>mRNA_C-linearis_contig10.656.1 ID=mRNA_C-linearis_contig10.656.1|Name=mRNA_C-linearis_contig10.656.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=996bp|location=Sequence derived from alignment at C-linearis_contig10:3351965..3353875- (Chordaria linearis ClinC8C monoicous)
ATGGCACGCACGCGCGCGATGAACCAACAACATCCACGCGGAAAGCAGGG
GGGCGGAGCGGTCGGGTCATCGCCAAGCCTCAAGCAGCTCGCACAGCTGG
CCATCGTCGGCATATGCGCGGGCAAAGATGGCACGCACGCGCGCGATGAA
CCAACAACATCCACGCGGAAAGCAGGGGGGCGGAGCGGTCGGGTCATCGC
CAAGCCTCAAGCAGCTCGCACAGCTGGCCATCGTCGGCATATGCGCGGGC
AAAGGCTCAACGGCTAACGCAATCCCGCCACTTCCACCACCACCAGCAAC
AACAACAACCACCAGCAGCACCGCTACGGCGACGCTGGCGTTCGCGCCAC
CGCCGCCACCACCATCATCCTCCCCGGCCCCGCGCTTCTCTCCCGCCTCG
TCCTTCCGGGCGTTCCGCCTGGCCGCAGCAAACCCCGCCGGCGGCAGCAG
CCACCGGGCCGTACCACGAACGGCCTCGTTTTCTTGCATGTCATCATCGC
CATCCCCGCCGTTCCGCGACGGCGCCAGCCGCGGAAGCAGCACCGGGTGG
GGCACCGGCGGCGGCACGGGGGGGGGGCGGCGAAGAATTTCTTCGTCCCC
GCTGCGCGCAGCGGTGGGGTCCCTGGCTCAACGGCTAACGCAATCCCGCC
ACTTCCACCACCACCAGCAACAACAACAACCACCAGCAGCACCGCTACGG
CGACGCTGGCGTTCGCGCCACCGCCGCCACCACCATCATCCTCCCCGGCC
CCGCGCTTCTCTCCCGCCTCGTCCTTCCGGGCGTTCCGCCTGGCCGCAGC
AAACCCCGCCGGCGGCAGCAGCCACCGGGCCGTACCACGAACGGCCTCGT
TTTCTTGCATGTCATCATCGCCATCCCCGCCGTTCCGCGACGGCGCCAGC
CGCGGAAGCAGCACCGGGTGGGGCACCGGCGGCGGCACGGGGGGGGGGCG
GCGAAGAATTTCTTCGTCCCCGCTGCGCGCAGCGGTGGGGTCCCTG
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