mRNA_C-linearis_contig10.653.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig10.653.1 vs. uniprot
Match: D7G104_ECTSI (Alpha-1,2-fucosyltransferase, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G104_ECTSI) HSP 1 Score: 489 bits (1260), Expect = 5.900e-167 Identity = 235/287 (81.88%), Postives = 255/287 (88.85%), Query Frame = 2
Query: 875 AARGPGIVQLNFMGRLGNNLFEYAAARALADRLGWALSIQPAKGNVKKFGLLTRPEGMACFPGVRPLGPPPSNPEMAGLETVQFRGVQQELEDPAPRSIEMQGWFQDYGMFKSEKDRLREIMTLSPSCCGPTAPGPNDLVIHHRNYKAELTEQQYENLIFKDLKYEFYKAVLRDAADSVAGRAETVWVVGEFGDDEPLFQRLQQEHGNVKKAEGVEDQFHAFCFLMRAPRLVMAHSTFSWWVAFLGGATEIHFPLAKQNKGVTGPKIAVDEARYVYRDGLGNVVPAP 1735
A RGPGIV+LNFMGRLGNNLFEYAAARALADRLG+ALSIQPA N KKFGLLTRPEGMACFPGVRP+GP S+PEM GLETV+FRGV++EL DP PRSIEM+GWFQDY MFKSEKDRLR+IM L PSCCGPTAPGP DLVIHHRNY+AELT +QYE LIFKDL YEFY+AVLRDAA+S AG ETVWVVGEF D+EPLF+RLQQ+H NVK+AE VEDQFHAFCFL RAPRLVMAHSTFSWWVAFLG TE+HFPL +QN+GVTGP IAVDE RYVYRD G VVP P
Sbjct: 93 ATRGPGIVRLNFMGRLGNNLFEYAAARALADRLGFALSIQPAPYNRKKFGLLTRPEGMACFPGVRPVGPARSSPEMVGLETVKFRGVRRELGDPTPRSIEMEGWFQDYSMFKSEKDRLRKIMALDPSCCGPTAPGPGDLVIHHRNYRAELTAEQYEKLIFKDLDYEFYEAVLRDAAESAAGPPETVWVVGEFNDEEPLFKRLQQDHPNVKRAEMVEDQFHAFCFLSRAPRLVMAHSTFSWWVAFLGVGTEVHFPLTRQNQGVTGPSIAVDEGRYVYRDEAGRVVPPP 379
BLAST of mRNA_C-linearis_contig10.653.1 vs. uniprot
Match: D7G107_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G107_ECTSI) HSP 1 Score: 367 bits (943), Expect = 1.180e-121 Identity = 173/212 (81.60%), Postives = 186/212 (87.74%), Query Frame = 2
Query: 1100 MAGLETVQFRGVQQELEDPAPRSIEMQGWFQDYGMFKSEKDRLREIMTLSPSCCGPTAPGPNDLVIHHRNYKAELTEQQYENLIFKDLKYEFYKAVLRDAADSVAGRAETVWVVGEFGDDEPLFQRLQQEHGNVKKAEGVEDQFHAFCFLMRAPRLVMAHSTFSWWVAFLGGATEIHFPLAKQNKGVTGPKIAVDEARYVYRDGLGNVVPAP 1735
M GLETV+FRGV+QEL DP PRSIEM+GWFQDY MFKSEKDRLR+IM L PSCCGPTAPGP DLVIHHRNY+AELT +QYE LIFKDL YEFY+AVLRDAA+S AG ETVWVVGEF D+EPLF+RLQQ+H NVK+AE VEDQFHAFCFL RAPRLVMAHSTFSWWVAFLG TE+HFPL KQNKGVTGP IAVDE RYVYRD G VVP P
Sbjct: 1 MVGLETVKFRGVRQELGDPTPRSIEMEGWFQDYSMFKSEKDRLRKIMALDPSCCGPTAPGPGDLVIHHRNYRAELTAEQYEKLIFKDLDYEFYEAVLRDAAESAAGPPETVWVVGEFNDEEPLFKRLQQDHPNVKRAEMVEDQFHAFCFLSRAPRLVMAHSTFSWWVAFLGVGTEVHFPLTKQNKGVTGPSIAVDEGRYVYRDEAGRVVPPP 212
BLAST of mRNA_C-linearis_contig10.653.1 vs. uniprot
Match: A0A2H0RNU4_9BACT (Uncharacterized protein n=1 Tax=Candidatus Peregrinibacteria bacterium CG10_big_fil_rev_8_21_14_0_10_55_24 TaxID=1974791 RepID=A0A2H0RNU4_9BACT) HSP 1 Score: 100 bits (250), Expect = 5.780e-20 Identity = 80/282 (28.37%), Postives = 129/282 (45.74%), Query Frame = 2
Query: 893 IVQLNFMGRLGNNLFEYAAARALADRLGWALSIQPAKGNVKKFGLLTRPEGMACFPGVRPLGPPPSNPEMAGL----ETVQFRGVQQELEDPAPRSIEMQGWFQDYGMFKSEKDRLREIMTLSPSCCGPTAPGPNDLVIHHRNYKAELTEQQYENLIFKDLKYEFYKAVLRDAADSVAGRAETVWVVGEFGDDEPLFQRLQQEHGNVKKAEGVEDQFHAFCFLMRAPRLVMAHSTFSWWVAFLGGATEIHFPLAKQNKGVTGP--------KIAVDEARYVY 1702
+++++++G++GN LF+Y R LA++LG+AL +P G FPG + S P+ L V + L D PR I ++G FQ Y ++ +D +R L P+C G A NDLV+ R Y + L + +Y+ VL A V+ G +P +R ++ + +++ +ED FC + A ++ ++ S+FSWW AFL A I+FP + +TGP + VDE RYVY
Sbjct: 1 MIEVHYLGKIGNFLFQYCFGRLLAEQLGYALRAEPLPG----------------FPGTQQRIDGQSYPDGDTLVLSGNVVDLPAL---LADTRPRHIILKGAFQRYEYYRPHRDAIRTW--LQPACTGMPAASANDLVMQVRR-------DDYLRAVGYPLPFSYYEQVLTQAQYDRL-------VICTDGPTDPFLRRFRRFNPVIERRGVMED----FCLMHSARQIAISQSSFSWWAAFLSHAETIYFP-----RSLTGPFSPERPDIDLEVDEPRYVY 238
BLAST of mRNA_C-linearis_contig10.653.1 vs. uniprot
Match: UPI000E65365C (hypothetical protein n=2 Tax=Calidifontimicrobium TaxID=2828371 RepID=UPI000E65365C) HSP 1 Score: 83.2 bits (204), Expect = 2.010e-13 Identity = 95/310 (30.65%), Postives = 131/310 (42.26%), Query Frame = 2
Query: 896 VQLNFMGRLGNNLFEYAAARALADRLGWALSIQPAKGNVKKFGLLTRPEGM-----------ACFPGVRP---LGPPPSNPEMAGLETVQFRGVQQE--LEDPAPRSIEMQGWFQDYGMFKSEKDRLREIMTLSPSCCGPTAPGPNDLVIHHRNYKAELTEQQYENLIFKDLKYEFYKAVLRDAADSVAGRAETVWVVGEFGDDEPLFQRLQQEHGNVKKAEGVEDQFHAFCFLMRAPRLVMAHSTFSWWVAFLGGATEIHFPLAKQNK-GVTGPKIAVD--EARYVYRDGLGNVVPAPR*QLLFTCLRW 1768
V+L+F+G LGNNLF+YA AR LA+ LG AL +PA+ F + R G+ A P RP + P M + GV L R I ++G+FQ +DR+R L P A GP D+VIH R + L+ + L+ FY L +S+ TV V G DD L L + V L A R+V+A+STFSWW A+L ++ P + + P++A++ E RY DG VP R Q LRW
Sbjct: 3 VELHFVGHLGNNLFQYALARVLAEELGLALQCRPARER-PGFEAVERASGIVDRLDQWHHRFADVPLQRPGREIDHPQWRQVMGEQDGWHGHGVDLPFLLRSGRERRIVLRGYFQRTEYVHPWRDRVRRWYRLPPPAPA-FAAGPRDVVIHVR-------QSLDMKLLGRALEPSFYARAL----ESMTPAPRTVHVCGLGLDDPALTAALAPWRPRRLDLDAVG----TLAVLAHARRIVLANSTFSWWGAYLATEAQVIHPRPVRGYWSLDRPEVALEVPEDRYTVVDG----VPVRRWQ----PLRW 287
BLAST of mRNA_C-linearis_contig10.653.1 vs. uniprot
Match: UPI00114CC053 (hypothetical protein n=2 Tax=Candidatus Thiosymbion oneisti TaxID=589554 RepID=UPI00114CC053) HSP 1 Score: 78.6 bits (192), Expect = 1.640e-11 Identity = 80/298 (26.85%), Postives = 130/298 (43.62%), Query Frame = 2
Query: 893 IVQLNFMGRLGNNLFEYAAARALADRLGWALSIQ-----PAKGNVKKFGLLTRPEGMACFPGVRPLGPPPSNPEMAGLETVQFRGVQQELEDPA----PRSIEMQGWFQDYGMFKSEKDRLREIMTLSPSCCGPTAPGPNDLVIHHRNYKAELTEQQYENLIFKDL--KYEFYKAVLRDAADSVAGRAETVWVVGEFGDDEPLFQRLQQEHGNVKKAEGVEDQFHAFCFLMRAPRLVMAHSTFSWWVAFLGGATEIHFPLAKQNKGVTG---PKIAV---DEARYVYRDGLGNVVPAP 1735
++QL G +GNNLF+YA AR LA+ LG+AL ++ P K + LL+ + P + G F G + +LE R I ++G+F+ Y +F++ K R+R + P G P+D+VIH R + + + DL K +F + +++ G FG DE + + + ++D F F++ R++ + STF+WW FL A EIH P+ N P I + DE+RY Y + ++ AP
Sbjct: 1 MIQLRMQGLIGNNLFQYAFARILAEDLGYALEVKHSSYKPGKNIPQLEDLLSHFRDAPLAIDGKRFSRPVDRTALMGHNG--FDGFRIDLEGMRNCRQDRKILIKGFFERYEIFRTHKSRIRSWFAVDPIDLGYHI-APDDIVIHIRRGDFIVFSRAISLSFYLDLLEKLDFAR----------------LYICG-FGLDEEVKASFSKFGPIYIEGSPIDD----FRFMIGFNRIIQSQSTFAWWAGFLSKAEEIHAPVPPVNATPFERRYPHIDLRVNDESRYHYVHDVPHLERAP 274
BLAST of mRNA_C-linearis_contig10.653.1 vs. uniprot
Match: A0A7C7C2S9_9FLAO (Alpha-1,2-fucosyltransferase n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A7C7C2S9_9FLAO) HSP 1 Score: 70.9 bits (172), Expect = 5.030e-10 Identity = 71/276 (25.72%), Postives = 129/276 (46.74%), Query Frame = 2
Query: 893 IVQLNFMGRLGNNLFEYAAARALADRLGWALSIQPAKGNVKKFGLLTRPEGMACFPGVRPLGPPPSNPEMAGLETVQFRGVQQELEDPAPRSIEMQGWFQDYGMFKSEKDRLREIMTLSPSCCGPTAPGPNDLVIHHR--NYKAELTEQQYENLIFKDLKYEFYKAVLRDAADSVAGRAETVWVVGEFGDDEPL--FQRLQQE--HGNVKKAEGVEDQFHAFCFLMRAPRLVMAHSTFSWWVAFLGGATEIHFPLAKQNKGVTGPK--IAVDEARY 1696
++++N++GR+GNN+F+Y+ R LA+ LG L P PE A + V +N ++ ++ + + + E +S+ + G+FQ Y ++K K+RLR+ P A D+VIH R +Y + L + L E+Y + + ++ A+ + +V + + L F +L + +GNV ++D F +L A +++++ S+FS+WV FL A EI+ P + G + DE RY
Sbjct: 1 MIKVNYIGRMGNNMFQYSFGRILAEELGMHLVSNPI------------PEFRATYQSVPGKS---NNTDVLIVDDSNCKDILDKKESLVDKSLLLNGFFQQYTLYKPYKERLRQW--FKPKKMIEKAKEA-DIVIHIRLGDYMSTLIPSHWA------LPAEYYLSCIEMSS------AKNIHIVTDDPNHSFLNNFSKLNPKIINGNV-----IQD----FTYLTSAKKIILSRSSFSFWVGFLSEAEEIYSPNPDKGLWADGRQDLFVDDEERY 237
BLAST of mRNA_C-linearis_contig10.653.1 vs. uniprot
Match: A0A7R9SV16_9CHLO (Hypothetical protein n=1 Tax=Polyblepharides amylifera TaxID=1486889 RepID=A0A7R9SV16_9CHLO) HSP 1 Score: 68.2 bits (165), Expect = 1.990e-8 Identity = 86/318 (27.04%), Postives = 125/318 (39.31%), Query Frame = 2
Query: 890 GIVQLNFMGRLGNNLFEYAAARALADRLGWALSIQPAKGNVKKFGLLTR--------PEG-------------MACFPGVRPLGPPPSNPEMAGLETVQFRGVQQELEDPAPRSIEM-QGWFQDYGMFKSEKDRLR--------EIMTLSPSCCGPTAPGPNDLVIHHRNYKAE------LTEQQYENLIFKDLK--YEFYKAVLRDAADSVAGRAETVWVVGEFGDDEPLFQRLQQEHGNVKKAEGVEDQFHAFCFLMRAPRLVMAHSTFSWWVAFLGGATEIHFPLAK--QNKGVTGPKIAVD-EARYVYRDGLGN 1720
G+V L++ GR GNNLF+YA AR L LG+ + A +R PE M P V N +M L +E P + + + DY +FK K LR + S + APG D+V+H R E E +F + +YK VL S + +V + PL L +E K +D F +L+ A ++VM+ S+F+WW A L ATEIH+PL ++ V K+ +D E RY+Y D L +
Sbjct: 133 GVVSLDYNGRFGNNLFQYAFARILNLELGFEVQTVQAHAGRSNLYEASRIMHERSVVPESVPARTRTKLSDDFMEDQPNVVVRSNKFGNADMCSL-----------IETCRPAIVHIIDAFLHDYQLFKPYKRLLRCHWFNFPRFEASNSETVRRVGAPGAEDVVVHVRLGDLETRLDRSFEESGKNEKLFLHIPAPLAYYKQVLSGIQFS-----RVLLLVEPQSVNHPLVLDLVKEFD--AKVLASQDFLLDFWYLLEAKKIVMSPSSFAWWGALLSNATEIHYPLIGYYHHQNVRRVKLIIDDEPRYIYHDILAS 432
BLAST of mRNA_C-linearis_contig10.653.1 vs. uniprot
Match: A0A8J2T2Q7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T2Q7_9STRA) HSP 1 Score: 58.2 bits (139), Expect = 1.260e-5 Identity = 55/183 (30.05%), Postives = 78/183 (42.62%), Query Frame = 2
Query: 1181 GWFQDYGMFKSEKDRLREIMTLSPSCCGPTAPGPNDLVIHHRNYKAELTEQQYENLIFKDLKYEFYKAVLRDAADSVAGRAETVWVVGEFGDDEPLFQRLQQEHGNVK------KAEGVEDQFHA-FCFLMRAPRLVMAHSTFSWWVAFLGGATEIHFPLAKQNKGVTGPKIAVDEARYVYRD 1708
G++Q Y +++ LR L + P D++IH R K T+ Y K YE Y + D+ GR + V P R +H N + +G A F +L RA RLV+ ST+SWW A++G ATE+H P GV + DE RYV+ D
Sbjct: 50 GYWQHYALYRGLGSPLRSHFRLRDLELSES-PRKTDVIIHVRLCK---TQNHY-----KLYTYENYFRHVFARLDNWRGRVK---VCAACDAARPGVVRDLVKHLNATVVSPRIRGDGRGRSVEADFAYLARATRLVVTESTYSWWAAYVGQATEVHAP------GVGTVPVPADERRYVFHD 214
BLAST of mRNA_C-linearis_contig10.653.1 vs. uniprot
Match: A4F1H5_9RHOB (Alpha-1,2-fucosyltransferase, putative n=1 Tax=Roseobacter sp. SK209-2-6 TaxID=388739 RepID=A4F1H5_9RHOB) HSP 1 Score: 58.2 bits (139), Expect = 1.470e-5 Identity = 73/276 (26.45%), Postives = 115/276 (41.67%), Query Frame = 2
Query: 878 ARGPGIVQLNFMGRLGNNLFEYAAARALADRLGWALSIQPAKGNVKKFGLLTRPEGMACFPGVRPLGPPPSNPE---------MAGLETVQFRGVQQELEDPAPRS----IEMQGWFQDYGMFKSEKDRLREIMT-----------LSPSCCGPTAPGPNDLVIHHRNYKAELTEQQYENLIFKDLKYEFYKAVLRDAADSVAGRAETVWVVGEFGDDEPLFQRLQQE---HGNVKKAEGVEDQFHAFCFLMRAPRLVMAHSTFSWWVAFLGGATE 1624
++ PG++ GRLGN +F+YAA RALA RLG L++ ++ G+LTR + P +PL PP + + G T +FR Q +PA + + G++Q F S D++R+ T ++ G TA L + +Y A + D Y Y+A L + V G + TV+V F DD P + + V G + F + ++ +S+FSWW A+L E
Sbjct: 3 SKDPGMITTRLHGRLGNQMFQYAAGRALAARLGVPLALDSRGAKLRGEGVLTR---VFDLPLAQPLSLPPLKQDAPLRYAAWRLTG-RTPRFRREQGLGYNPAFETWGDDSYLHGYWQSEAYFDSIADQIRQDFTFPEFSNSQNREMAQRIAGSTAIS---LHVRRGDYVALAAH------VLCDQAY--YEAALTRILEGVEG-SPTVYV---FSDD-PNWAKENLPLPCEKVVVDFNGPDTDFEDMRLMSLCQHNIIGNSSFSWWAAWLNTHNE 258
BLAST of mRNA_C-linearis_contig10.653.1 vs. uniprot
Match: A0A2A2QHN6_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobiae bacterium Tous-C4TDCM TaxID=1982332 RepID=A0A2A2QHN6_9BACT) HSP 1 Score: 57.0 bits (136), Expect = 3.380e-5 Identity = 62/257 (24.12%), Postives = 106/257 (41.25%), Query Frame = 2
Query: 887 PGIVQLNFMGRLGNNLFEYAAARALADRLGWALSIQPA---KGNVKKFGLLTRPEGMA-----CFPGVRPLGPPPSNP--EMAGLETVQFRGVQQELEDP----APRSIEMQGWFQDYGMFKSEKDRLREIMTLSPSCCGPTAPGPNDLVIHHRNYKAELTEQQYENLI-FKDLKYEFYKAVLRDAADSVAGRAETVWVVGEFGDDEPLFQRLQQEHGNVKKAEGVEDQFHAFCFLMRAPRLVMAHSTFSWWVAFLG 1612
P ++++ +GRLGNNLF+YA R LA+R G L + + + + R + A C G R L E G+ ++ + Q DP AP + G+FQ F+ D++R + P+ G P V ++ + Y + F ++Y+ + + + G + F DD P + R Q + + + E D + A V+A+S++SWW A+LG
Sbjct: 2 PSMIRVLMLGRLGNNLFQYAVGRVLAERHGVPLVLDASWFDRAGWNQVSFFRRLDLRAKVVRRCSLGARALRKTTGKHYWEYRGVPVIRESNIDQSF-DPRILEAPADCVVMGYFQSALFFEGMADQIRREIDPRPAVAGLRIPDGLGSV---KSVAVHVRRGDYLRIPEFGVCGTDYYRTAMNRLRERLPGARFFI-----FSDD-PAWCRAQFKGEDEQVMEADVDPLADLHRMSLAGHHVIANSSYSWWAAWLG 248 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.653.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.653.1 >prot_C-linearis_contig10.653.1 ID=prot_C-linearis_contig10.653.1|Name=mRNA_C-linearis_contig10.653.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=378bp MRVPWKRAALALFPAAILLWNAYVYSRGTAGISAHQDTRASQHHQNGGPDback to top mRNA from alignment at C-linearis_contig10:3319559..3324010- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.653.1 ID=mRNA_C-linearis_contig10.653.1|Name=mRNA_C-linearis_contig10.653.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4452bp|location=Sequence derived from alignment at C-linearis_contig10:3319559..3324010- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:3319559..3324010- >mRNA_C-linearis_contig10.653.1 ID=mRNA_C-linearis_contig10.653.1|Name=mRNA_C-linearis_contig10.653.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2268bp|location=Sequence derived from alignment at C-linearis_contig10:3319559..3324010- (Chordaria linearis ClinC8C monoicous)back to top |