mRNA_C-linearis_contig10.653.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.653.1
Unique NamemRNA_C-linearis_contig10.653.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig10.653.1 vs. uniprot
Match: D7G104_ECTSI (Alpha-1,2-fucosyltransferase, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G104_ECTSI)

HSP 1 Score: 489 bits (1260), Expect = 5.900e-167
Identity = 235/287 (81.88%), Postives = 255/287 (88.85%), Query Frame = 2
Query:  875 AARGPGIVQLNFMGRLGNNLFEYAAARALADRLGWALSIQPAKGNVKKFGLLTRPEGMACFPGVRPLGPPPSNPEMAGLETVQFRGVQQELEDPAPRSIEMQGWFQDYGMFKSEKDRLREIMTLSPSCCGPTAPGPNDLVIHHRNYKAELTEQQYENLIFKDLKYEFYKAVLRDAADSVAGRAETVWVVGEFGDDEPLFQRLQQEHGNVKKAEGVEDQFHAFCFLMRAPRLVMAHSTFSWWVAFLGGATEIHFPLAKQNKGVTGPKIAVDEARYVYRDGLGNVVPAP 1735
            A RGPGIV+LNFMGRLGNNLFEYAAARALADRLG+ALSIQPA  N KKFGLLTRPEGMACFPGVRP+GP  S+PEM GLETV+FRGV++EL DP PRSIEM+GWFQDY MFKSEKDRLR+IM L PSCCGPTAPGP DLVIHHRNY+AELT +QYE LIFKDL YEFY+AVLRDAA+S AG  ETVWVVGEF D+EPLF+RLQQ+H NVK+AE VEDQFHAFCFL RAPRLVMAHSTFSWWVAFLG  TE+HFPL +QN+GVTGP IAVDE RYVYRD  G VVP P
Sbjct:   93 ATRGPGIVRLNFMGRLGNNLFEYAAARALADRLGFALSIQPAPYNRKKFGLLTRPEGMACFPGVRPVGPARSSPEMVGLETVKFRGVRRELGDPTPRSIEMEGWFQDYSMFKSEKDRLRKIMALDPSCCGPTAPGPGDLVIHHRNYRAELTAEQYEKLIFKDLDYEFYEAVLRDAAESAAGPPETVWVVGEFNDEEPLFKRLQQDHPNVKRAEMVEDQFHAFCFLSRAPRLVMAHSTFSWWVAFLGVGTEVHFPLTRQNQGVTGPSIAVDEGRYVYRDEAGRVVPPP 379          
BLAST of mRNA_C-linearis_contig10.653.1 vs. uniprot
Match: D7G107_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G107_ECTSI)

HSP 1 Score: 367 bits (943), Expect = 1.180e-121
Identity = 173/212 (81.60%), Postives = 186/212 (87.74%), Query Frame = 2
Query: 1100 MAGLETVQFRGVQQELEDPAPRSIEMQGWFQDYGMFKSEKDRLREIMTLSPSCCGPTAPGPNDLVIHHRNYKAELTEQQYENLIFKDLKYEFYKAVLRDAADSVAGRAETVWVVGEFGDDEPLFQRLQQEHGNVKKAEGVEDQFHAFCFLMRAPRLVMAHSTFSWWVAFLGGATEIHFPLAKQNKGVTGPKIAVDEARYVYRDGLGNVVPAP 1735
            M GLETV+FRGV+QEL DP PRSIEM+GWFQDY MFKSEKDRLR+IM L PSCCGPTAPGP DLVIHHRNY+AELT +QYE LIFKDL YEFY+AVLRDAA+S AG  ETVWVVGEF D+EPLF+RLQQ+H NVK+AE VEDQFHAFCFL RAPRLVMAHSTFSWWVAFLG  TE+HFPL KQNKGVTGP IAVDE RYVYRD  G VVP P
Sbjct:    1 MVGLETVKFRGVRQELGDPTPRSIEMEGWFQDYSMFKSEKDRLRKIMALDPSCCGPTAPGPGDLVIHHRNYRAELTAEQYEKLIFKDLDYEFYEAVLRDAAESAAGPPETVWVVGEFNDEEPLFKRLQQDHPNVKRAEMVEDQFHAFCFLSRAPRLVMAHSTFSWWVAFLGVGTEVHFPLTKQNKGVTGPSIAVDEGRYVYRDEAGRVVPPP 212          
BLAST of mRNA_C-linearis_contig10.653.1 vs. uniprot
Match: A0A2H0RNU4_9BACT (Uncharacterized protein n=1 Tax=Candidatus Peregrinibacteria bacterium CG10_big_fil_rev_8_21_14_0_10_55_24 TaxID=1974791 RepID=A0A2H0RNU4_9BACT)

HSP 1 Score: 100 bits (250), Expect = 5.780e-20
Identity = 80/282 (28.37%), Postives = 129/282 (45.74%), Query Frame = 2
Query:  893 IVQLNFMGRLGNNLFEYAAARALADRLGWALSIQPAKGNVKKFGLLTRPEGMACFPGVRPLGPPPSNPEMAGL----ETVQFRGVQQELEDPAPRSIEMQGWFQDYGMFKSEKDRLREIMTLSPSCCGPTAPGPNDLVIHHRNYKAELTEQQYENLIFKDLKYEFYKAVLRDAADSVAGRAETVWVVGEFGDDEPLFQRLQQEHGNVKKAEGVEDQFHAFCFLMRAPRLVMAHSTFSWWVAFLGGATEIHFPLAKQNKGVTGP--------KIAVDEARYVY 1702
            +++++++G++GN LF+Y   R LA++LG+AL  +P  G                FPG +      S P+   L      V    +   L D  PR I ++G FQ Y  ++  +D +R    L P+C G  A   NDLV+  R          Y   +   L + +Y+ VL  A            V+   G  +P  +R ++ +  +++   +ED    FC +  A ++ ++ S+FSWW AFL  A  I+FP     + +TGP         + VDE RYVY
Sbjct:    1 MIEVHYLGKIGNFLFQYCFGRLLAEQLGYALRAEPLPG----------------FPGTQQRIDGQSYPDGDTLVLSGNVVDLPAL---LADTRPRHIILKGAFQRYEYYRPHRDAIRTW--LQPACTGMPAASANDLVMQVRR-------DDYLRAVGYPLPFSYYEQVLTQAQYDRL-------VICTDGPTDPFLRRFRRFNPVIERRGVMED----FCLMHSARQIAISQSSFSWWAAFLSHAETIYFP-----RSLTGPFSPERPDIDLEVDEPRYVY 238          
BLAST of mRNA_C-linearis_contig10.653.1 vs. uniprot
Match: UPI000E65365C (hypothetical protein n=2 Tax=Calidifontimicrobium TaxID=2828371 RepID=UPI000E65365C)

HSP 1 Score: 83.2 bits (204), Expect = 2.010e-13
Identity = 95/310 (30.65%), Postives = 131/310 (42.26%), Query Frame = 2
Query:  896 VQLNFMGRLGNNLFEYAAARALADRLGWALSIQPAKGNVKKFGLLTRPEGM-----------ACFPGVRP---LGPPPSNPEMAGLETVQFRGVQQE--LEDPAPRSIEMQGWFQDYGMFKSEKDRLREIMTLSPSCCGPTAPGPNDLVIHHRNYKAELTEQQYENLIFKDLKYEFYKAVLRDAADSVAGRAETVWVVGEFGDDEPLFQRLQQEHGNVKKAEGVEDQFHAFCFLMRAPRLVMAHSTFSWWVAFLGGATEIHFPLAKQNK-GVTGPKIAVD--EARYVYRDGLGNVVPAPR*QLLFTCLRW 1768
            V+L+F+G LGNNLF+YA AR LA+ LG AL  +PA+     F  + R  G+           A  P  RP   +  P     M   +     GV     L     R I ++G+FQ        +DR+R    L P      A GP D+VIH R       +     L+ + L+  FY   L    +S+     TV V G   DD  L   L          + V         L  A R+V+A+STFSWW A+L    ++  P   +    +  P++A++  E RY   DG    VP  R Q     LRW
Sbjct:    3 VELHFVGHLGNNLFQYALARVLAEELGLALQCRPARER-PGFEAVERASGIVDRLDQWHHRFADVPLQRPGREIDHPQWRQVMGEQDGWHGHGVDLPFLLRSGRERRIVLRGYFQRTEYVHPWRDRVRRWYRLPPPAPA-FAAGPRDVVIHVR-------QSLDMKLLGRALEPSFYARAL----ESMTPAPRTVHVCGLGLDDPALTAALAPWRPRRLDLDAVG----TLAVLAHARRIVLANSTFSWWGAYLATEAQVIHPRPVRGYWSLDRPEVALEVPEDRYTVVDG----VPVRRWQ----PLRW 287          
BLAST of mRNA_C-linearis_contig10.653.1 vs. uniprot
Match: UPI00114CC053 (hypothetical protein n=2 Tax=Candidatus Thiosymbion oneisti TaxID=589554 RepID=UPI00114CC053)

HSP 1 Score: 78.6 bits (192), Expect = 1.640e-11
Identity = 80/298 (26.85%), Postives = 130/298 (43.62%), Query Frame = 2
Query:  893 IVQLNFMGRLGNNLFEYAAARALADRLGWALSIQ-----PAKGNVKKFGLLTRPEGMACFPGVRPLGPPPSNPEMAGLETVQFRGVQQELEDPA----PRSIEMQGWFQDYGMFKSEKDRLREIMTLSPSCCGPTAPGPNDLVIHHRNYKAELTEQQYENLIFKDL--KYEFYKAVLRDAADSVAGRAETVWVVGEFGDDEPLFQRLQQEHGNVKKAEGVEDQFHAFCFLMRAPRLVMAHSTFSWWVAFLGGATEIHFPLAKQNKGVTG---PKIAV---DEARYVYRDGLGNVVPAP 1735
            ++QL   G +GNNLF+YA AR LA+ LG+AL ++     P K   +   LL+           +    P     + G     F G + +LE        R I ++G+F+ Y +F++ K R+R    + P   G     P+D+VIH R     +  +      + DL  K +F +                +++ G FG DE +     +      +   ++D    F F++   R++ + STF+WW  FL  A EIH P+   N        P I +   DE+RY Y   + ++  AP
Sbjct:    1 MIQLRMQGLIGNNLFQYAFARILAEDLGYALEVKHSSYKPGKNIPQLEDLLSHFRDAPLAIDGKRFSRPVDRTALMGHNG--FDGFRIDLEGMRNCRQDRKILIKGFFERYEIFRTHKSRIRSWFAVDPIDLGYHI-APDDIVIHIRRGDFIVFSRAISLSFYLDLLEKLDFAR----------------LYICG-FGLDEEVKASFSKFGPIYIEGSPIDD----FRFMIGFNRIIQSQSTFAWWAGFLSKAEEIHAPVPPVNATPFERRYPHIDLRVNDESRYHYVHDVPHLERAP 274          
BLAST of mRNA_C-linearis_contig10.653.1 vs. uniprot
Match: A0A7C7C2S9_9FLAO (Alpha-1,2-fucosyltransferase n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A7C7C2S9_9FLAO)

HSP 1 Score: 70.9 bits (172), Expect = 5.030e-10
Identity = 71/276 (25.72%), Postives = 129/276 (46.74%), Query Frame = 2
Query:  893 IVQLNFMGRLGNNLFEYAAARALADRLGWALSIQPAKGNVKKFGLLTRPEGMACFPGVRPLGPPPSNPEMAGLETVQFRGVQQELEDPAPRSIEMQGWFQDYGMFKSEKDRLREIMTLSPSCCGPTAPGPNDLVIHHR--NYKAELTEQQYENLIFKDLKYEFYKAVLRDAADSVAGRAETVWVVGEFGDDEPL--FQRLQQE--HGNVKKAEGVEDQFHAFCFLMRAPRLVMAHSTFSWWVAFLGGATEIHFPLAKQNKGVTGPK--IAVDEARY 1696
            ++++N++GR+GNN+F+Y+  R LA+ LG  L   P             PE  A +  V       +N ++  ++    + +  + E    +S+ + G+FQ Y ++K  K+RLR+     P      A    D+VIH R  +Y + L    +       L  E+Y + +  ++      A+ + +V +  +   L  F +L  +  +GNV     ++D    F +L  A +++++ S+FS+WV FL  A EI+ P   +     G +     DE RY
Sbjct:    1 MIKVNYIGRMGNNMFQYSFGRILAEELGMHLVSNPI------------PEFRATYQSVPGKS---NNTDVLIVDDSNCKDILDKKESLVDKSLLLNGFFQQYTLYKPYKERLRQW--FKPKKMIEKAKEA-DIVIHIRLGDYMSTLIPSHWA------LPAEYYLSCIEMSS------AKNIHIVTDDPNHSFLNNFSKLNPKIINGNV-----IQD----FTYLTSAKKIILSRSSFSFWVGFLSEAEEIYSPNPDKGLWADGRQDLFVDDEERY 237          
BLAST of mRNA_C-linearis_contig10.653.1 vs. uniprot
Match: A0A7R9SV16_9CHLO (Hypothetical protein n=1 Tax=Polyblepharides amylifera TaxID=1486889 RepID=A0A7R9SV16_9CHLO)

HSP 1 Score: 68.2 bits (165), Expect = 1.990e-8
Identity = 86/318 (27.04%), Postives = 125/318 (39.31%), Query Frame = 2
Query:  890 GIVQLNFMGRLGNNLFEYAAARALADRLGWALSIQPAKGNVKKFGLLTR--------PEG-------------MACFPGVRPLGPPPSNPEMAGLETVQFRGVQQELEDPAPRSIEM-QGWFQDYGMFKSEKDRLR--------EIMTLSPSCCGPTAPGPNDLVIHHRNYKAE------LTEQQYENLIFKDLK--YEFYKAVLRDAADSVAGRAETVWVVGEFGDDEPLFQRLQQEHGNVKKAEGVEDQFHAFCFLMRAPRLVMAHSTFSWWVAFLGGATEIHFPLAK--QNKGVTGPKIAVD-EARYVYRDGLGN 1720
            G+V L++ GR GNNLF+YA AR L   LG+ +    A          +R        PE              M   P V        N +M  L           +E   P  + +   +  DY +FK  K  LR           + S +     APG  D+V+H R    E        E      +F  +     +YK VL     S       + +V     + PL   L +E     K    +D    F +L+ A ++VM+ S+F+WW A L  ATEIH+PL     ++ V   K+ +D E RY+Y D L +
Sbjct:  133 GVVSLDYNGRFGNNLFQYAFARILNLELGFEVQTVQAHAGRSNLYEASRIMHERSVVPESVPARTRTKLSDDFMEDQPNVVVRSNKFGNADMCSL-----------IETCRPAIVHIIDAFLHDYQLFKPYKRLLRCHWFNFPRFEASNSETVRRVGAPGAEDVVVHVRLGDLETRLDRSFEESGKNEKLFLHIPAPLAYYKQVLSGIQFS-----RVLLLVEPQSVNHPLVLDLVKEFD--AKVLASQDFLLDFWYLLEAKKIVMSPSSFAWWGALLSNATEIHYPLIGYYHHQNVRRVKLIIDDEPRYIYHDILAS 432          
BLAST of mRNA_C-linearis_contig10.653.1 vs. uniprot
Match: A0A8J2T2Q7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T2Q7_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.260e-5
Identity = 55/183 (30.05%), Postives = 78/183 (42.62%), Query Frame = 2
Query: 1181 GWFQDYGMFKSEKDRLREIMTLSPSCCGPTAPGPNDLVIHHRNYKAELTEQQYENLIFKDLKYEFYKAVLRDAADSVAGRAETVWVVGEFGDDEPLFQRLQQEHGNVK------KAEGVEDQFHA-FCFLMRAPRLVMAHSTFSWWVAFLGGATEIHFPLAKQNKGVTGPKIAVDEARYVYRD 1708
            G++Q Y +++     LR    L       + P   D++IH R  K   T+  Y     K   YE Y   +    D+  GR +   V        P   R   +H N        + +G      A F +L RA RLV+  ST+SWW A++G ATE+H P      GV    +  DE RYV+ D
Sbjct:   50 GYWQHYALYRGLGSPLRSHFRLRDLELSES-PRKTDVIIHVRLCK---TQNHY-----KLYTYENYFRHVFARLDNWRGRVK---VCAACDAARPGVVRDLVKHLNATVVSPRIRGDGRGRSVEADFAYLARATRLVVTESTYSWWAAYVGQATEVHAP------GVGTVPVPADERRYVFHD 214          
BLAST of mRNA_C-linearis_contig10.653.1 vs. uniprot
Match: A4F1H5_9RHOB (Alpha-1,2-fucosyltransferase, putative n=1 Tax=Roseobacter sp. SK209-2-6 TaxID=388739 RepID=A4F1H5_9RHOB)

HSP 1 Score: 58.2 bits (139), Expect = 1.470e-5
Identity = 73/276 (26.45%), Postives = 115/276 (41.67%), Query Frame = 2
Query:  878 ARGPGIVQLNFMGRLGNNLFEYAAARALADRLGWALSIQPAKGNVKKFGLLTRPEGMACFPGVRPLGPPPSNPE---------MAGLETVQFRGVQQELEDPAPRS----IEMQGWFQDYGMFKSEKDRLREIMT-----------LSPSCCGPTAPGPNDLVIHHRNYKAELTEQQYENLIFKDLKYEFYKAVLRDAADSVAGRAETVWVVGEFGDDEPLFQRLQQE---HGNVKKAEGVEDQFHAFCFLMRAPRLVMAHSTFSWWVAFLGGATE 1624
            ++ PG++     GRLGN +F+YAA RALA RLG  L++      ++  G+LTR   +   P  +PL  PP   +         + G  T +FR  Q    +PA  +      + G++Q    F S  D++R+  T           ++    G TA     L +   +Y A          +  D  Y  Y+A L    + V G + TV+V   F DD P + +          V    G +  F     +      ++ +S+FSWW A+L    E
Sbjct:    3 SKDPGMITTRLHGRLGNQMFQYAAGRALAARLGVPLALDSRGAKLRGEGVLTR---VFDLPLAQPLSLPPLKQDAPLRYAAWRLTG-RTPRFRREQGLGYNPAFETWGDDSYLHGYWQSEAYFDSIADQIRQDFTFPEFSNSQNREMAQRIAGSTAIS---LHVRRGDYVALAAH------VLCDQAY--YEAALTRILEGVEG-SPTVYV---FSDD-PNWAKENLPLPCEKVVVDFNGPDTDFEDMRLMSLCQHNIIGNSSFSWWAAWLNTHNE 258          
BLAST of mRNA_C-linearis_contig10.653.1 vs. uniprot
Match: A0A2A2QHN6_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobiae bacterium Tous-C4TDCM TaxID=1982332 RepID=A0A2A2QHN6_9BACT)

HSP 1 Score: 57.0 bits (136), Expect = 3.380e-5
Identity = 62/257 (24.12%), Postives = 106/257 (41.25%), Query Frame = 2
Query:  887 PGIVQLNFMGRLGNNLFEYAAARALADRLGWALSIQPA---KGNVKKFGLLTRPEGMA-----CFPGVRPLGPPPSNP--EMAGLETVQFRGVQQELEDP----APRSIEMQGWFQDYGMFKSEKDRLREIMTLSPSCCGPTAPGPNDLVIHHRNYKAELTEQQYENLI-FKDLKYEFYKAVLRDAADSVAGRAETVWVVGEFGDDEPLFQRLQQEHGNVKKAEGVEDQFHAFCFLMRAPRLVMAHSTFSWWVAFLG 1612
            P ++++  +GRLGNNLF+YA  R LA+R G  L +  +   +    +     R +  A     C  G R L         E  G+  ++   + Q   DP    AP    + G+FQ    F+   D++R  +   P+  G   P     V   ++    +    Y  +  F     ++Y+  +    + + G    +     F DD P + R Q +  + +  E   D       +  A   V+A+S++SWW A+LG
Sbjct:    2 PSMIRVLMLGRLGNNLFQYAVGRVLAERHGVPLVLDASWFDRAGWNQVSFFRRLDLRAKVVRRCSLGARALRKTTGKHYWEYRGVPVIRESNIDQSF-DPRILEAPADCVVMGYFQSALFFEGMADQIRREIDPRPAVAGLRIPDGLGSV---KSVAVHVRRGDYLRIPEFGVCGTDYYRTAMNRLRERLPGARFFI-----FSDD-PAWCRAQFKGEDEQVMEADVDPLADLHRMSLAGHHVIANSSYSWWAAWLG 248          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.653.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7G104_ECTSI5.900e-16781.88Alpha-1,2-fucosyltransferase, putative n=2 Tax=Ect... [more]
D7G107_ECTSI1.180e-12181.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A2H0RNU4_9BACT5.780e-2028.37Uncharacterized protein n=1 Tax=Candidatus Peregri... [more]
UPI000E65365C2.010e-1330.65hypothetical protein n=2 Tax=Calidifontimicrobium ... [more]
UPI00114CC0531.640e-1126.85hypothetical protein n=2 Tax=Candidatus Thiosymbio... [more]
A0A7C7C2S9_9FLAO5.030e-1025.72Alpha-1,2-fucosyltransferase n=1 Tax=Flavobacteria... [more]
A0A7R9SV16_9CHLO1.990e-827.04Hypothetical protein n=1 Tax=Polyblepharides amyli... [more]
A0A8J2T2Q7_9STRA1.260e-530.05Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A4F1H5_9RHOB1.470e-526.45Alpha-1,2-fucosyltransferase, putative n=1 Tax=Ros... [more]
A0A2A2QHN6_9BACT3.380e-524.12Uncharacterized protein n=1 Tax=Verrucomicrobiae b... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:3319559..3324010 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score493.0
Seed ortholog evalue1.2e-136
Seed eggNOG ortholog2880.D7G104
Hectar predicted targeting categorysignal peptide
EggNOG OGs2D12B@1,2SGFI@2759
Ec32 ortholog descriptionalpha-1,2-fucosyltransferase, putative
Ec32 orthologEc-22_001510.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size1833
Cds size1134
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.653.1prot_C-linearis_contig10.653.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 3319651..3322353 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927350.1396785-UTR-C-linearis_contig10:3319558..33196501622927350.1396785-UTR-C-linearis_contig10:3319558..3319650Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 3319559..3319650 -
1690879644.9554381-UTR-C-linearis_contig10:3319558..33196501690879644.9554381-UTR-C-linearis_contig10:3319558..3319650Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 3319559..3319650 -
1622927350.2058494-UTR-C-linearis_contig10:3322353..33225261622927350.2058494-UTR-C-linearis_contig10:3322353..3322526Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 3322354..3322526 -
1690879645.012207-UTR-C-linearis_contig10:3322353..33225261690879645.012207-UTR-C-linearis_contig10:3322353..3322526Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 3322354..3322526 -
1622927350.2172294-UTR-C-linearis_contig10:3322934..33232321622927350.2172294-UTR-C-linearis_contig10:3322934..3323232Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 3322935..3323232 -
1690879645.0236692-UTR-C-linearis_contig10:3322934..33232321690879645.0236692-UTR-C-linearis_contig10:3322934..3323232Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 3322935..3323232 -
1622927350.2260044-UTR-C-linearis_contig10:3323874..33240101622927350.2260044-UTR-C-linearis_contig10:3323874..3324010Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 3323875..3324010 -
1690879645.0319912-UTR-C-linearis_contig10:3323874..33240101690879645.0319912-UTR-C-linearis_contig10:3323874..3324010Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 3323875..3324010 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927350.1525488-CDS-C-linearis_contig10:3319650..33198811622927350.1525488-CDS-C-linearis_contig10:3319650..3319881Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3319651..3319881 -
1690879644.9758067-CDS-C-linearis_contig10:3319650..33198811690879644.9758067-CDS-C-linearis_contig10:3319650..3319881Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3319651..3319881 -
1622927350.1683295-CDS-C-linearis_contig10:3320321..33204741622927350.1683295-CDS-C-linearis_contig10:3320321..3320474Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3320322..3320474 -
1690879644.9850836-CDS-C-linearis_contig10:3320321..33204741690879644.9850836-CDS-C-linearis_contig10:3320321..3320474Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3320322..3320474 -
1622927350.1861944-CDS-C-linearis_contig10:3321107..33212301622927350.1861944-CDS-C-linearis_contig10:3321107..3321230Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3321108..3321230 -
1690879644.9939063-CDS-C-linearis_contig10:3321107..33212301690879644.9939063-CDS-C-linearis_contig10:3321107..3321230Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3321108..3321230 -
1622927350.195831-CDS-C-linearis_contig10:3321726..33223531622927350.195831-CDS-C-linearis_contig10:3321726..3322353Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3321727..3322353 -
1690879645.002818-CDS-C-linearis_contig10:3321726..33223531690879645.002818-CDS-C-linearis_contig10:3321726..3322353Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3321727..3322353 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.653.1

>prot_C-linearis_contig10.653.1 ID=prot_C-linearis_contig10.653.1|Name=mRNA_C-linearis_contig10.653.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=378bp
MRVPWKRAALALFPAAILLWNAYVYSRGTAGISAHQDTRASQHHQNGGPD
GISTHVDTGNPWNRREGGGTAGSDSIGAHQDPMVQEHHQAARGPGIVQLN
FMGRLGNNLFEYAAARALADRLGWALSIQPAKGNVKKFGLLTRPEGMACF
PGVRPLGPPPSNPEMAGLETVQFRGVQQELEDPAPRSIEMQGWFQDYGMF
KSEKDRLREIMTLSPSCCGPTAPGPNDLVIHHRNYKAELTEQQYENLIFK
DLKYEFYKAVLRDAADSVAGRAETVWVVGEFGDDEPLFQRLQQEHGNVKK
AEGVEDQFHAFCFLMRAPRLVMAHSTFSWWVAFLGGATEIHFPLAKQNKG
VTGPKIAVDEARYVYRDGLGNVVPAPR*
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mRNA from alignment at C-linearis_contig10:3319559..3324010-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.653.1 ID=mRNA_C-linearis_contig10.653.1|Name=mRNA_C-linearis_contig10.653.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4452bp|location=Sequence derived from alignment at C-linearis_contig10:3319559..3324010- (Chordaria linearis ClinC8C monoicous)
CGAGCTACCGAGCGAGAGTACACCGCCAGTGAGACAGAGAGCAACAGAGG GACACCGCGCTACATAATCGTATCATATCTCTCTGTAGACTCCCCTGGCC AACACCTTATAGAAGAGAGCGATACCCTACAGGCAGGTGAGAACACCGAC CCTGCCTTGCATTGTTAGTCATCTACCCCCGAACCTGTCCCGGTGTGCAA CATGCAGACCGCCAAGAAGCCGTGGCTTGGAAGGCGGGTGCCACCCCCTT GTTTTTTATGTTGGAGGGAATTCGCACACCGTCGATGAAGGGTGGGGGCT GCTGTCGGCATACCCTGACGTGTTGCCTAATTTCAGCAGTGGTACATGGA GGTGTGTGTGTGGGTATGAAACGTGAAGGGATGGCCGTGGTGTGTGATCT GAGAAGGTTGGCATGATGGAAAGAGTTGTCGCGGGTTGCGTGTTATGAAA CATCTGCGAGGCATTCCTGCTGTAAACCTACATGTATCGGTTAATATACC GCTGACAGCAGCCTTTCCGCCTTTTGTGCTGGCCCGCAGAATGTGGTTGC CAGTTTGACGCACAACAGGGACGTGGCGCGGAAGAATCGTGTGCAGCAGG TCTCAGCGAGCCCCCCCTCCCCCCGCCTCGTGGTAGACAATGGTCTGCTT GGTGTCTGGGACATTCCTCAACAATAATGACCACAATAGCGCAGGCCATG CAGCACTAAAAAACGATAGCATCGCGCCCGCGTTTGTTTCGCCTCCGCTC GTTCTCTGTCGGATATTTTTCTTGTCAGCGTACGCGAGGTTTTCTCGGCC ACTGCCTCACACCGGAAAGCAGCAGAGCTTCCACCTCTCACCGGAAGTAA GGACGAGGTCCCGACGCCCTGAGCCCACCCTGGCGTAGGAGTCGTACCGC AGATTACCGGCGCCGTGTAGCGAGGGATGCGGCGGTAGGGCTGTGTATGC GCTCGCTCCGAGGGCGGCTGGCGGGGACCCAGGCTAGGGAAAGAGAGGGC TTTGCCTGTCGGAGGCGGACGGTTAGCTGGCTTGGGATTCAGCGCGCCGC GCTTGGTGGCTCGGGGAGCTCGAGAGGTGGGGGTGTACTTTGTCCACCAC CTGAACACCCATTGGAGCATCACAATCTGTATTGTAGATTCCCGCTACAG TTTGGGGAACGAGTGGCAGCGCCTTCACAGAGGATTGCAAGCGGTTCTAG GTGCGGTGCTCCTGCCTGAACCCGGCCTCGAGGTTGTGTTCTTGTCAACG GGAGAGAGGGCAAGAATGCTCGCTCCCTTCGCAAGAACTGCGCGATTTAC GGGCAGCACAGCACACACACACACGGGCTATCCTTAAGAAAAGTGCGTTG CGGCGACTGCTGGCGTCTTGCCCATACGTCCCGGACTGGGTACGAAGTGC ATAGATAGCAGCTAGCCAATTCTGCTCTCTCTCTCTCTCTCTCTCTCTCT CTCTCTTTCTCTGGGCATGTCCTTGTTACGGCAGGATCTTACGCATCGGG GAACCAAGGCCAAGACCCCTTGCAGCACACACGCACCGCTGCTGTGGAGA GCGGAGAGCGCTACGCCTTTCCACACCACCAGCCGACGAATCGCGCCGCC GCGCGATCGCTGCGAGCCGCCCGCCGCCAGCCACGCGCGGCATAGAGGAC AGCAATCATGCGAGTGCCTTGGAAGAGGGCGGCCCTGGCCCTCTTCCCGG CCGCCATTCTCCTCTGGAACGCCTACGTGTATTCACGCGGCACCGCCGGC ATCAGCGCCCACCAAGACACGAGGGCTTCGCAGCATCACCAGAATGGGGG TCCCGACGGCATCAGCACCCATGTGGACACGGGGAATCCGTGGAATCGTC GGGAAGGGGGGGGCACCGCGGGCAGCGACAGCATCGGCGCCCACCAAGAC CCGATGGTTCAGGAGCACCACCAGGCGGCGAGGGGTCCCGGTATCGTGCA GCTCAACTTCATGGGCCGGCTGGGTAACAACCTCTTCGAGTACGCCGCCG CGCGCGCGCTCGCCGACCGCCTCGGCTGGGCGCTCTCCATCCAGCCCGCG AAGGGCAACGTCAAAAAGTTCGGCCTGTTGACCAGGCCCGAGGGCATGGC GTGCTTCCCGGGGGTGCGGCCCCTCGGCCCACCCCCGTCCAACCCGGAGA TGGCCGGCCTGGAGACGGTCCAATTCCGCGGTGTGCAGCAGGAGCTGGAG GACCCGGCTCCGAGGTCAATCGAGATGCAGGGCTGGTTCCAGGACTACGG GATGTTCAAGTCGGAGAAGGATCGGCTTCGTGAGGTAAGGTCGGCAGAGC GGCGTGTGCTTGGTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT CTCTCTCTCTCTCTCTCTCTCTGTTGCTGTTTGGTTGTCTGGGTCCTTCT GGTTGGGCAAATGTGTTGTCTGTTTGCGCCCGTGGAACCTACTGCTGTGC TCCGGGTTCTTGCTCTCAGCCCTCAGCTCTCGGCTCCTTGCCCGTGTATC GTTAGGCCGCGTAACCCAGACCCGCCTGGTAGCCTGAACCAGCGCAAGAG GCGGAACAAGGTTTTCGGCACGTGCCCAAAGGACAGCAGCCCCGATTCTC GACCGTGCACTTCTGTGTCCCAACCGTGCCCGCGATACCTTGTCTGACGC CTTCCCCCCCCCGGCCCAGATAACCCACTCATAGAGCTCGTGCGTATATG GCACCGCATGTAGGCAAAGCTCGATCTCCCGTTTGCGTTCGCGTCATTTT AACCCCCCTGATGCCGCTGGCGCTCGACAGATCATGACCCTGAGCCCGTC GTGCTGCGGCCCGACCGCCCCTGGACCGAACGACCTCGTGATCCACCACC GCAACTACAAGGCGGAGCTCACCGAACAGCAGTACGAGAATCTCATCTTC AAGGTGTGCCGCCGTGCTCGATGAGCGTGCTTTCTGTGATTATGTCGCTT TCTTGATCTAGGACTTTCTGGGTGGTGCTCTTTGCCGCCTTGCGGTGGAG GTCGTGCTGCTGTTTGACTGTGTAGCTCTACACCTGACCCCCAAGAGTGA CCCTAGCCCTAACACTCTACGGCGATAGTTAGATGGCTTGTTGATTGTTT GCGTTTAGAGGTTTTGCGGCTCCGCGTGTTGCGGGATATGGAAAGCGATG CGACAGACGGAGGCTGTGTGGCGGCGGTCCTGCTGGTGCTGCTACTTTGT GTATGGCGTCTTGAAATGTTCCGTTCATGGGGGTCCCGAGCCTCGCGGGG GGGGGAGAAGAGCACTGGCACCCGAGTCGGATGGCACCCAAGGGGGCAGG TCAACGGCTTTGTATGTTTTTCCCGCCACCCCGGGCGCTTCTCGCGTGGG TCCGGAACATTTTTTGGCAGATCAACCCTACATGTGTTATTTTTTACGGA ACCGTCGCCGGTCTGCGTCTAACTGGTAAAAAACCAACCGTTCAAAAGTT ATGTTGATGAGTTCGTGTCGCTTGCAGTCTACAGATCAACCCCGTCTCCT ACCCCCTCAACCCCGTCCCCCCCGACAACGGCACAGGACTTGAAATACGA GTTCTACAAGGCGGTCTTGAGAGACGCGGCCGATTCCGTCGCGGGCCGGG CCGAAACGGTGTGGGTCGTGGGGGAATTCGGCGACGACGAGCCGCTGTTC CAGCGGCTACAGCAGGAGCACGGCAACGTCAAGAAGGCGGTGAGTAGGAG CAGGCCGGCAATAAAGCAGGAGCGGCAAAAGCTTAAGTAGCAAAGGCCAC CAACAACCACCCTAGAACGCACCGCACCACATTTTCTCCGTCCGATCTGC CGAAACTTTTTTTTCTTCCTATCTATTTTTAGTTCTCATTGTGCTTTGCT CTCGTCTGAAGGATAAATACGTAGCACCTAAATAGTGGCGTGTGCGGAGT GTTTCTTGCGTCCTCGCCGTGAGCACCGGGCTCGGTACATGTTTTGGTCG GTGATCTTTGCCCACAAAGGTACCTAAACGATAGCATGTATGTAGATACC ATAGCCCCGTTCGTTCCCCCCAATGACCCCCCCCCCCTCACGTGTATGCT AGAATTGTATGCTAGAATTAATCCACCGTTGCATCGCGCACCCCCGCCCC GTGGCGCATCCCTTTTGCATGCCACACAGGAAGGGGTGGAGGATCAGTTC CACGCGTTCTGCTTCCTGATGCGAGCACCCCGGCTGGTGATGGCGCACAG CACGTTCAGCTGGTGGGTGGCGTTCCTCGGGGGTGCGACGGAGATCCACT TCCCGCTGGCCAAGCAGAACAAGGGGGTGACGGGGCCGAAGATCGCGGTG GATGAGGCCCGCTACGTGTACCGGGATGGCCTTGGAAACGTGGTTCCGGC TCCTAGATAGCAGCTTCTCTTCACTTGTTTGCGGTGGTTTGTTTAAGGGA GGGGAGGGGGGGGTCCTGTGTTCGTTTTTTGACAGCGGGGTGTGGTGTTT GG
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Coding sequence (CDS) from alignment at C-linearis_contig10:3319559..3324010-

>mRNA_C-linearis_contig10.653.1 ID=mRNA_C-linearis_contig10.653.1|Name=mRNA_C-linearis_contig10.653.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2268bp|location=Sequence derived from alignment at C-linearis_contig10:3319559..3324010- (Chordaria linearis ClinC8C monoicous)
ATGCGAGTGCCTTGGAAGAGGGCGGCCCTGGCCCTCTTCCCGGCCGCCAT
TCTCCTCTGGAACGCCTACGTGTATTCACGCGGCACCGCCGGCATCAGCG
CCCACCAAGACACGAGGGCTTCGCAGCATCACCAGAATGGGGGTCCCGAC
GGCATCAGCACCCATGTGGACACGGGGAATCCGTGGAATCGTCGGGAAGG
GGGGGGCACCGCGGGCAGCGACAGCATCGGCGCCCACCAAGACCCGATGG
TTCAGGAGCACCACCAGGCGGCGAGGGGTCCCGGTATCGTGCAGCTCAAC
TTCATGGGCCGGCTGGGTAACAACCTCTTCGAGTACGCCGCCGCGCGCGC
GCTCGCCGACCGCCTCGGCTGGGCGCTCTCCATCCAGCCCGCGAAGGGCA
ACGTCAAAAAGTTCGGCCTGTTGACCAGGCCCGAGGGCATGGCGTGCTTC
CCGGGGGTGCGGCCCCTCGGCCCACCCCCGTCCAACCCGGAGATGGCCGG
CCTGGAGACGGTCCAATTCCGCGGTGTGCAGCAGGAGCTGGAGGACCCGG
CTCCGAGGTCAATCGAGATGCAGGGCTGGTTCCAGGACTACGGGATGTTC
AAGTCGGAGAAGGATCGGCTTCGTGAGATGCGAGTGCCTTGGAAGAGGGC
GGCCCTGGCCCTCTTCCCGGCCGCCATTCTCCTCTGGAACGCCTACGTGT
ATTCACGCGGCACCGCCGGCATCAGCGCCCACCAAGACACGAGGGCTTCG
CAGCATCACCAGAATGGGGGTCCCGACGGCATCAGCACCCATGTGGACAC
GGGGAATCCGTGGAATCGTCGGGAAGGGGGGGGCACCGCGGGCAGCGACA
GCATCGGCGCCCACCAAGACCCGATGGTTCAGGAGCACCACCAGGCGGCG
AGGGGTCCCGGTATCGTGCAGCTCAACTTCATGGGCCGGCTGGGTAACAA
CCTCTTCGAGTACGCCGCCGCGCGCGCGCTCGCCGACCGCCTCGGCTGGG
CGCTCTCCATCCAGCCCGCGAAGGGCAACGTCAAAAAGTTCGGCCTGTTG
ACCAGGCCCGAGGGCATGGCGTGCTTCCCGGGGGTGCGGCCCCTCGGCCC
ACCCCCGTCCAACCCGGAGATGGCCGGCCTGGAGACGGTCCAATTCCGCG
GTGTGCAGCAGGAGCTGGAGGACCCGGCTCCGAGGTCAATCGAGATGCAG
GGCTGGTTCCAGGACTACGGGATGTTCAAGTCGGAGAAGGATCGGCTTCG
TGAGATCATGACCCTGAGCCCGTCGTGCTGCGGCCCGACCGCCCCTGGAC
CGAACGACCTCGTGATCCACCACCGCAACTACAAGGCGGAGCTCACCGAA
CAGCAGTACGAGAATCTCATCTTCAAGATCATGACCCTGAGCCCGTCGTG
CTGCGGCCCGACCGCCCCTGGACCGAACGACCTCGTGATCCACCACCGCA
ACTACAAGGCGGAGCTCACCGAACAGCAGTACGAGAATCTCATCTTCAAG
GACTTGAAATACGAGTTCTACAAGGCGGTCTTGAGAGACGCGGCCGATTC
CGTCGCGGGCCGGGCCGAAACGGTGTGGGTCGTGGGGGAATTCGGCGACG
ACGAGCCGCTGTTCCAGCGGCTACAGCAGGAGCACGGCAACGTCAAGAAG
GCGGACTTGAAATACGAGTTCTACAAGGCGGTCTTGAGAGACGCGGCCGA
TTCCGTCGCGGGCCGGGCCGAAACGGTGTGGGTCGTGGGGGAATTCGGCG
ACGACGAGCCGCTGTTCCAGCGGCTACAGCAGGAGCACGGCAACGTCAAG
AAGGCGGAAGGGGTGGAGGATCAGTTCCACGCGTTCTGCTTCCTGATGCG
AGCACCCCGGCTGGTGATGGCGCACAGCACGTTCAGCTGGTGGGTGGCGT
TCCTCGGGGGTGCGACGGAGATCCACTTCCCGCTGGCCAAGCAGAACAAG
GGGGTGACGGGGCCGAAGATCGCGGTGGATGAGGCCCGCTACGTGTACCG
GGATGGCCTTGGAAACGTGGTTCCGGCTCCTAGATAGGAAGGGGTGGAGG
ATCAGTTCCACGCGTTCTGCTTCCTGATGCGAGCACCCCGGCTGGTGATG
GCGCACAGCACGTTCAGCTGGTGGGTGGCGTTCCTCGGGGGTGCGACGGA
GATCCACTTCCCGCTGGCCAAGCAGAACAAGGGGGTGACGGGGCCGAAGA
TCGCGGTGGATGAGGCCCGCTACGTGTACCGGGATGGCCTTGGAAACGTG
GTTCCGGCTCCTAGATAG
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