mRNA_C-linearis_contig10.648.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.648.1
Unique NamemRNA_C-linearis_contig10.648.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.648.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:3280586..3281483 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size573
Cds size408
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.648.1prot_C-linearis_contig10.648.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 3280586..3281318 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927325.0461664-CDS-C-linearis_contig10:3280585..32807191622927325.0461664-CDS-C-linearis_contig10:3280585..3280719Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3280586..3280719 -
1690879627.290308-CDS-C-linearis_contig10:3280585..32807191690879627.290308-CDS-C-linearis_contig10:3280585..3280719Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3280586..3280719 -
1622927325.0553029-CDS-C-linearis_contig10:3281044..32813181622927325.0553029-CDS-C-linearis_contig10:3281044..3281318Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3281045..3281318 -
1690879627.3013177-CDS-C-linearis_contig10:3281044..32813181690879627.3013177-CDS-C-linearis_contig10:3281044..3281318Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3281045..3281318 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927325.065981-UTR-C-linearis_contig10:3281318..32814831622927325.065981-UTR-C-linearis_contig10:3281318..3281483Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 3281319..3281483 -
1690879627.310672-UTR-C-linearis_contig10:3281318..32814831690879627.310672-UTR-C-linearis_contig10:3281318..3281483Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 3281319..3281483 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.648.1

>prot_C-linearis_contig10.648.1 ID=prot_C-linearis_contig10.648.1|Name=mRNA_C-linearis_contig10.648.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=136bp
MAQPLSRIDTASIRSTRRPPSFMGGLMKRKMAPPLCSPKGGNSRDRGEVS
NNTNAKKSKTASEEAATPESPPRFPIRKGCACPVEQEVLQREWDKLGPED
KAVRRAQRARRGERCSRCGCVGYLRRNCPTCPPVK*
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mRNA from alignment at C-linearis_contig10:3280586..3281483-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.648.1 ID=mRNA_C-linearis_contig10.648.1|Name=mRNA_C-linearis_contig10.648.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=898bp|location=Sequence derived from alignment at C-linearis_contig10:3280586..3281483- (Chordaria linearis ClinC8C monoicous)
ACAACGACGACGAGCAGGGGGGAAAACGCGCGCATGCGTGTGTGTGGGAG
AGGCATTGCGCCCTTGTGTACTCGATTGCCTCTCTGTCTGAGCGGACGTT
GTTTCTTCAAAGAGCATTGTTTTGCCTGATGGGCAGGCAATTCAGCCGCA
TCATGACGGACCGATATGGCACAGCCCTTATCGAGAATCGACACCGCTAG
TATACGTAGTACACGTAGGCCCCCCTCTTTCATGGGTGGTTTGATGAAGC
GGAAGATGGCGCCTCCTCTTTGCAGCCCTAAAGGTGGCAACAGTCGTGAT
AGAGGTGAAGTATCAAACAACACCAACGCCAAGAAGAGCAAGACAGCCTC
GGAAGAAGCGGCCACACCTGAAAGCCCACCGCGCTTTCCGATTCGAAAAG
GGTGCGCCTGTCCCGTTGAGCAGGAAGTTCTTCAACGAGGTGATGTACAT
GAGAATAGAAGCAACGTTTGCCTGATTTTGAAATCACGGGTCGTACTTAC
TTGCTTGCGCGCCAAGGACGCGTGTGTGTGTATGTGCGCCCGTTGCCCCC
GAAACCACACTACTGATTGATGCTCAACAAGTGTCTGCATGATGCCTTGC
TGTACCATCTAAACGCAACACCACCAACTCCTTCTACGATGGTCACACCC
CTCGCTCCGTACTAATGGCGCGCAACGCCTATCCATAGCCACGGTAGTCC
GGTGGCGAGAGTGATCTACGGAAGTACTTATAACAGTACGCCTGCTTTTG
TTTTCAAAATTCAGAATGGGACAAGCTCGGCCCCGAAGACAAGGCCGTAA
GGCGGGCGCAGCGAGCGAGGCGTGGAGAGCGCTGCTCGCGATGCGGGTGC
GTCGGGTACCTCCGCCGAAACTGTCCCACGTGCCCGCCAGTCAAGTGA
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Coding sequence (CDS) from alignment at C-linearis_contig10:3280586..3281483-

>mRNA_C-linearis_contig10.648.1 ID=mRNA_C-linearis_contig10.648.1|Name=mRNA_C-linearis_contig10.648.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=816bp|location=Sequence derived from alignment at C-linearis_contig10:3280586..3281483- (Chordaria linearis ClinC8C monoicous)
ATGGCACAGCCCTTATCGAGAATCGACACCGCTAGTATACGTAGTACACG
TAGGCCCCCCTCTTTCATGGGTGGTTTGATGAAGCGGAAGATGGCGCCTC
CTCTTTGCAGCCCTAAAGGTGGCAACAGTCGTGATAGAGGTGAAGTATCA
AACAACACCAACGCCAAGAAGAGCAAGACAGCCTCGGAAGAAGCGGCCAC
ACCTGAAAGCCCACCGCGCTTTCCGATTCGAAAAGGGTGCGCCTGTCCCG
TTGAGCAGGAAGTTCTTCAACGAGATGGCACAGCCCTTATCGAGAATCGA
CACCGCTAGTATACGTAGTACACGTAGGCCCCCCTCTTTCATGGGTGGTT
TGATGAAGCGGAAGATGGCGCCTCCTCTTTGCAGCCCTAAAGGTGGCAAC
AGTCGTGATAGAGGTGAAGTATCAAACAACACCAACGCCAAGAAGAGCAA
GACAGCCTCGGAAGAAGCGGCCACACCTGAAAGCCCACCGCGCTTTCCGA
TTCGAAAAGGGTGCGCCTGTCCCGTTGAGCAGGAAGTTCTTCAACGAGAA
TGGGACAAGCTCGGCCCCGAAGACAAGGCCGTAAGGCGGGCGCAGCGAGC
GAGGCGTGGAGAGCGCTGCTCGCGATGCGGGTGCGTCGGGTACCTCCGCC
GAAACTGTCCCACGTGCCCGCCAGTCAAGTGAAATGGGACAAGCTCGGCC
CCGAAGACAAGGCCGTAAGGCGGGCGCAGCGAGCGAGGCGTGGAGAGCGC
TGCTCGCGATGCGGGTGCGTCGGGTACCTCCGCCGAAACTGTCCCACGTG
CCCGCCAGTCAAGTGA
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