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Homology
BLAST of mRNA_C-linearis_contig10.646.1 vs. uniprot
Match: D7FND0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FND0_ECTSI) HSP 1 Score: 208 bits (529), Expect = 1.770e-58 Identity = 142/274 (51.82%), Postives = 178/274 (64.96%), Query Frame = 2
Query: 2 AHYVMYTADAARRAGLSHAEPGEQGLTGNGANEEGASARKGGGRREPQSGRVNSKSRGQGATGNTAASN--ASVVATAKHGGPKNRKEDDADGEEISPYSLALARP-GAAVAPASKGRRKGARTRKSGLSR-RGAMPEGD---SAAAQEAHRSRLQSERLRTFSLAGFPLRTGTDGDTTVVPALIPIPEGFGQVDERGQRSYVAGRIMEALREGQVDSITGRKKKLAVPLWHRATEEIDSSGAGSVLYSDLIGQPYSVLMGPKRTALAGKQATG 802
AHYV Y ADAA+RAGL A+ GA+A + R G G AS+ ++ VAT K G K+ DD+ GE++SPYS+ALARP A V P ++ R +T K L+ R A+ EG SAAA++A RS +QSERLRTFSLAG PLR G + DTT VPALIPIPEGFG + + +S+VAGRI+EALR QVD+ITGR+K++AVPLWHRAT+++DSSGAGSVLYSDLIG YSVL+GP R + +Q TG
Sbjct: 392 AHYVKYAADAAQRAGL--------------ASTNGAAAXXXXXXXXXXXXXXXXRERPNGDGGVVKASSKKSARVATKKRAGSKHGVGDDS-GEQMSPYSVALARPLPARVTPDTERRTGQLKTAKPPLNAGRFALGEGQGTASAAAEQARRSLIQSERLRTFSLAGHPLRRGAENDTTAVPALIPIPEGFGHANGQ-HKSFVAGRIIEALRASQVDAITGRQKRIAVPLWHRATDDMDSSGAGSVLYSDLIGHTYSVLVGPTRGVVGRRQGTG 649
BLAST of mRNA_C-linearis_contig10.646.1 vs. uniprot
Match: A0A6H5KN53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN53_9PHAE) HSP 1 Score: 171 bits (434), Expect = 1.290e-44 Identity = 84/122 (68.85%), Postives = 102/122 (83.61%), Query Frame = 2
Query: 437 SRLQSERLRTFSLAGFPLRTGTDGDTTVVPALIPIPEGFGQVDERGQRSYVAGRIMEALREGQVDSITGRKKKLAVPLWHRATEEIDSSGAGSVLYSDLIGQPYSVLMGPKRTALAGKQATG 802
S +QSERLRTFSLAG PLR G + DTT VPALIPIPEGFG + + +S+VAGRI+EALR QV++ITGR+K++AVPLWHRAT+++DSSGAGSVLYSDLIG YSVL+GPKR + +Q TG
Sbjct: 597 SLIQSERLRTFSLAGHPLRRGVEHDTTAVPALIPIPEGFGHANGQ-HKSFVAGRIIEALRASQVNAITGRQKRIAVPLWHRATDDMDSSGAGSVLYSDLIGHTYSVLVGPKRGIVGRRQGTG 717
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| Model size | 969 |
| Cds size | 792 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622927349.6217186-UTR-C-linearis_contig10:3269492..3269656 | 1622927349.6217186-UTR-C-linearis_contig10:3269492..3269656 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig10 3269493..3269656 - |
| 1690879644.5368135-UTR-C-linearis_contig10:3269492..3269656 | 1690879644.5368135-UTR-C-linearis_contig10:3269492..3269656 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig10 3269493..3269656 - |
| 1622927349.6889327-UTR-C-linearis_contig10:3274459..3274472 | 1622927349.6889327-UTR-C-linearis_contig10:3274459..3274472 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig10 3274460..3274472 - |
| 1690879644.6063678-UTR-C-linearis_contig10:3274459..3274472 | 1690879644.6063678-UTR-C-linearis_contig10:3274459..3274472 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig10 3274460..3274472 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622927349.6328468-CDS-C-linearis_contig10:3269656..3269816 | 1622927349.6328468-CDS-C-linearis_contig10:3269656..3269816 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 3269657..3269816 - |
| 1690879644.548085-CDS-C-linearis_contig10:3269656..3269816 | 1690879644.548085-CDS-C-linearis_contig10:3269656..3269816 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 3269657..3269816 - |
| 1622927349.641481-CDS-C-linearis_contig10:3271985..3272071 | 1622927349.641481-CDS-C-linearis_contig10:3271985..3272071 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 3271986..3272071 - |
| 1690879644.5570862-CDS-C-linearis_contig10:3271985..3272071 | 1690879644.5570862-CDS-C-linearis_contig10:3271985..3272071 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 3271986..3272071 - |
| 1622927349.6498084-CDS-C-linearis_contig10:3272397..3272521 | 1622927349.6498084-CDS-C-linearis_contig10:3272397..3272521 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 3272398..3272521 - |
| 1690879644.5664687-CDS-C-linearis_contig10:3272397..3272521 | 1690879644.5664687-CDS-C-linearis_contig10:3272397..3272521 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 3272398..3272521 - |
| 1622927349.6611655-CDS-C-linearis_contig10:3273387..3273542 | 1622927349.6611655-CDS-C-linearis_contig10:3273387..3273542 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 3273388..3273542 - |
| 1690879644.5763862-CDS-C-linearis_contig10:3273387..3273542 | 1690879644.5763862-CDS-C-linearis_contig10:3273387..3273542 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 3273388..3273542 - |
| 1622927349.6709197-CDS-C-linearis_contig10:3273827..3273959 | 1622927349.6709197-CDS-C-linearis_contig10:3273827..3273959 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 3273828..3273959 - |
| 1690879644.5866523-CDS-C-linearis_contig10:3273827..3273959 | 1690879644.5866523-CDS-C-linearis_contig10:3273827..3273959 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 3273828..3273959 - |
| 1622927349.6799457-CDS-C-linearis_contig10:3274324..3274459 | 1622927349.6799457-CDS-C-linearis_contig10:3274324..3274459 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 3274325..3274459 - |
| 1690879644.597734-CDS-C-linearis_contig10:3274324..3274459 | 1690879644.597734-CDS-C-linearis_contig10:3274324..3274459 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 3274325..3274459 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.646.1 >prot_C-linearis_contig10.646.1 ID=prot_C-linearis_contig10.646.1|Name=mRNA_C-linearis_contig10.646.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=264bp
MYTADAARRAGLSHAEPGEQGLTGNGANEEGASARKGGGRREPQSGRVNS KSRGQGATGNTAASNASVVATAKHGGPKNRKEDDADGEEISPYSLALARP GAAVAPASKGRRKGARTRKSGLSRRGAMPEGDSAAAQEAHRSRLQSERLR TFSLAGFPLRTGTDGDTTVVPALIPIPEGFGQVDERGQRSYVAGRIMEAL REGQVDSITGRKKKLAVPLWHRATEEIDSSGAGSVLYSDLIGQPYSVLMG PKRTALAGKQATG* back to topmRNA from alignment at C-linearis_contig10:3269493..3274472- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig10.646.1 ID=mRNA_C-linearis_contig10.646.1|Name=mRNA_C-linearis_contig10.646.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4980bp|location=Sequence derived from alignment at C-linearis_contig10:3269493..3274472- (Chordaria linearis ClinC8C monoicous) CGCCCACTACGTCATGTACACCGCTGACGCCGCACGGCGGGCGGGGCTAT
CGCATGCCGAACCGGGCGAGCAAGGGTTGACGGGAAACGGCGCGAACGAG
GAGGGAGCGTCCGCAAGAAAAGGGGGAGGACGAAGGGAGCCGCAATCGGT
AGGCTGGAGTTCGCTCTTGTGCTTCGACGTATGTAGGTGGATACATCCTT
GCGTTGTGTGCCAAATAGAGGCGCGTTGCGGACGTGGCGTCGACGGTGGC
ATACTGTTGATGATTTTGAACCACCGTCCACAGTGGATGGAGGGACGGCA
GAGAGTAGTACCGGATGTGATGCTCCCAAGATAAGCCGACAATAAATAGC
GACGTGTACGCTTGTTACGACGACAGAACCCTTGGTAGGTTTAAGCATTC
TCCTGCAAAGTACACCACGAAAGCACGGCGTCTATTGTGTACATAACTCG
AGAACCAGCCTCCCCCAGACACCTGCATGCCATGACGACGACGCAATACC
TGGTTATCATCAGGGTCGAGTTAACAGCAAATCTCGAGGGCAAGGTGCTA
CCGGTAACACTGCGGCCAGTAACGCTTCCGTTGTCGCGACGGCAAAGCAC
GGAGGTCCGAAAAACAGGAAGGAAGACGATGCTGACGGCGAAGAGGTAAA
TCGACCCGATATTCTCACGGGACTTGCCGGGTCGCAGGGTGGAGATGGGA
CATTCATCTGCTGGGTACCTCGGCCCGTTTGCTTCTTTGTATTCCTTTTC
GAACCTGGCGCGGAAGACACGGTGCGATTCCTCGGGTTTCTATGGTTTTC
GTTCTCGGGCTCACTCAAACCTGGTATTGCAAGGATACGAGACAGATCAC
GGCCATGGGTTGGTACCAAGTCTCTCTCTTGCTCCTCTCCTCACTCGTGT
AACTTTCTCCCCCCCTGGGTGTCCTATCAGATATCGCCGTACAGCCTCGC
CTTGGCCCGGCCTGGAGCAGCGGTCGCCCCAGCCTCCAAGGGCAGACGCA
AGGGAGCTAGAACGAGGAAATCCGGGCTGTCGCGCCGGGGAGCTATGCCG
GAGGGCGACAGCGCGGCCGCCCAAGAAGCCCACAGGTGGAGGCAGGATGG
GTTAGACGGAGCCTTGCAGAAAAGCGGTGGTACCAGAGAAGACTGCTGCT
TTGTATTTTCCACTGACGGTCGCCCCGGTGGACTAGTGGTTTAACCTCGA
ACCCACTAGCAGCAAAGTCTGGAGTTCAATTCCAAGCAAAGGTGTTTCTT
TTGCGACTTTGCAGGTGAAAGCGATAACATAGCTGAAAAAGCTCGTGAGT
ACCAAACTTCGACTTAGCACGTTGACGAGGGAAAGGGATGGCTGCACCCT
TCTCGCGATAAAATCCAAGGCAAGCACCGCAGGAGGAGGGTGTGGCAAAA
AAGAAACAGAAAAAGAAGAAAAAAGCCCCAGTGTTTACCCCCTCCTGTGT
AACCCCGGTTGGTTCTAGTTGTACAGAAAAATACACTGAACAAGTGTAGT
ACTCTAAATACACCGCAACGTGTAGTACACGTCTCGCCTTGATCGGAAAG
GGACTGTCGCCAAAACAAATGGGACGAAAACACACACACACACACACACA
CACACACACACACACTGATGGCACAAAATTCGTCTTTCTGAACCACGAGG
TGTGACGCTTGCCTGTTGTTCAGATGAAGGTTTCACCTGGCACAATGCGT
TTGTTTGCCGCGAATCGGTGACCCGGGAACTACAAGGGCTAAATACGTAG
TTTGGTGTGAGGCTGAGCTCCGCCCTTGGCTCAATATTTTGATCGGTAAT
TGGTCTGGTCAAGCAACGTCCATTCAGATACAAACCTCCAGTGGCCACGT
GCCGCATTCGAAAAATGCTGCCTGAGTAAACCCTTCAAAACGAAGCGCCA
GCGCCACGTCGAATTGAGCTCTTCGGTTTTTTTCCGATGTTTTTGGAGCA
GGTCACGGCTCCAATCGGAGCGACTACGAACGTTCAGTCTCGCGGGGTTC
CCTCTGCGCACGGGGACGGACGGCGACACAACAGTTGTGCCGGCTCTCAT
CCCGATTCCGGAAGGATTTGGCCAAGTAAGCATGCTTTGGGCGCTCCCTC
TGCTGCACGTCCAGAAACGGCGCTTGCGTGTGGGGTTGCTGGTTCTCGTG
GGATGGATGCCCGAATCTTCGTGAGCCTGGAGAGCGCGCGCGAATCGTTT
TCAAAGACACGAATCGGTTTCACGGACCGATGCGCAACCTTCGTGCGTTC
GGTAGGGCAATCCTTGAGCCCCCGCCCCGGCTCCATGGCACCCTAGAAAC
CACGTCCCTGTTTCTGCGACGAATATTAGTATTTCGACTGGCGGGTGCTG
GGCGTTGTTTGTCTTCCCTCAACTTCGTCGTGTGAACCGATGCTCTGGCA
GGTGGACGAAAGAGGGCAACGGTCGTACGTGGCTGGCCGCATCATGGAAG
CTTTGCGGGAGGGACAAGTCGATTCCATCACCGGCAGGTATATGCGAGCC
GACTGTGTTCGTACGGCACTGTGTGGCACACACCACAACACCCTCAAGGA
AAATACACTTGTCATCCTACCGAAAACCCACAATTGAAGTTGAAACATCA
TTTCGTGCTCACGGAAGAGGATAAAGCAAGAACTTAACAAACCCAAATTG
GTGTTGTCCGTATTTGAAGCAACCCTCTAAAGGGCGTTAACACTCTGCAA
AGTTTGGTGAGGAGCTAGGACCCTGTCTGCCATGCCACGTTTGGTGAAAA
GCTAGGTATATGGCCAATAGGCGGTGTGGGGCGGACCCGACCACTGTAAT
GCAGGGTTATCGTTATCGTTATTCGCTCATAATACCCTCACGTTTATTAG
CACTCTCAAGCTTGTAGGACGCAAGGCAAGTGAGAGAGGGGGGGAGTAAT
GCTAACCGCAATCCTCCGTGGCTCTTTACTACTGATGAGACTCTTCGTCC
GTGGCTCTTTGCTACTGAGACTCTATTCTCCGAGCGATTGACATCAGTTT
GTGATCCAACCTCTTGAGATACATGCATTACCGCGTGCCTGTATCTTGGG
CTGTGAGTCTCATATCGCTATATCCAACGGGCGCATCCTAGCACTGCAAT
ACCACAACAAATGGGGTTGAAGTAGTCGATGGCAGACAAAATACAAAGCA
AGATCAGTCGCAAGAAACAGAAAAATCAAATCAACTCTTCTAGTCTAGTA
CACAAAAAAAAGCGCCAGAAAAAAATATCATGTCATACAAAGAACGAATA
CGAAATAATCGAGAAGCAGACGTAAGAAGGAACCCGATCGGGAGTCTCGA
ACAGGCGACCCTCGCTGCTGGTCGAAGGCAGCTTGCCGATTAGGTGAGAC
CTTCATTATAGTGTCCTCTTTGAGGCTGGCTGATGTACGTAGTTGGGAAA
ACTCGAGACTCTCAATTTTGAGTGAGGTACAGTACTCTTCGAACTACTCT
GGGGCAATCGGGTGATATCGCGGCCTACAGCAGCCAAATAGAACCTAAAT
GCACACACACGCACATACATGCCGTTGTGCCCTGCTTGCACCGCTGCTGA
TCGGAAGGTTAAAGTTTGAATCTACAGGTTCACATCTGTCCTGATGTAAT
GCATACTGTATGCTATTGCGGTCTCGTAGTGCATAACCGCCGTGCCGCTT
TTCATCAGCATTTTCATGGATGCAGTAGGTTGAATACGGCAGTTCTGGTT
TCGCGTTGGTAGCACTTGAAGCTCAACTTCAAGTACTCAGAGGCTTGTGG
TCCAGACAAGTGTCCAAACAGTCTATCAAACGTGCTACTACGTAGACCAA
ACGGTTCTTGTAGTGTTTTTCTTCATATTGGGTATGAGTACATTTTTAAT
GGGGAACATTCAATTCCCGGAACAATGGGACGGTTTCAGGAATGGTTCCA
GAACCACGAATAGTCTTTAAGTTCCGTAGTCATGTCGGTAGCACCGACGG
AATTACCAAGGGCGGGCAAAGCACGTACTCGCCTACCCAGTTCACTCTGT
TTTCGCCCAGCAAAAAAAATACACTCCGTACGTACGTGCAACAAACATCA
TTCCGAACTTTCGAAGAGCGAGACGGCATACGAGCCATTCTCGCAGAAAA
ACCTCTGCCGACCTCGCTCTGCGCAGTACATCTTCGCGATACACTGAGTT
GTTGTTGCTTCGTTCGTGCATGCATCTGATGTCTGTTCTGGATTTAGTCA
CTACGGACTTGTCCTTGACCACCGCGTCTCGACAGACCCTCAACCTCTGA
TACCATCTCAGAGTTCCACACGGAAGAAGCTTACCGATTTCATAGGGTGT
ACCCTCATCAGAGTTTGTCCTCTGTGAGGCTTATGGCTTCGGAAAACCAT
GAGCTAATTTTAGGCTAGGTACATGTTTGAATTCGCCCTGGGCAATCGGG
CACAAACGTAAGCAAGGCTACACTTGGTTAAATAAAGGGAACTACATTTT
TTCAGCCATGTTCAAATGCTCAGCCGAAGAAAAAAACGCCACAAGCTTCT
CCGAGGTAATGTTTCCAGCCTCATATGGGCCGGTTGTTTTAGTCGCTCAA
GCGCCTGCAAGCGAGGGCTTCCGTGAATCTCGACATAATTTTAATGCTTC
ATTTGTTTCCTTCGTCTCTCTGCATCAATGCTCGCCCCGCCCACGCCACA
CAACAGGAAGAAAAAGCTCGCGGTACCGTTGTGGCACCGCGCGACGGAGG
AGATCGATTCCTCCGGCGCCGGTAGCGTTCTGTACTCGGACTTGATCGGC
CAACCGTACTCCGTGCTCATGGGGCCCAAGCGAACGGCACTGGCTGGCAA
GCAGGCAACAGGATAGCCGGAATGGTGGGATTTCACTTTCCGGCAAAGAA
AGGTGACAAGGGCGGTGACTGCGGGTCATTTTTGCTGCTGTCCGAGGCGC
CGACTACTTTGTTGCCTCGTGAACAGAAAGAAGACTCGTAGGGACATGTG
CGGGAGCACATATGGGGATTTAGTACGGAA back to topCoding sequence (CDS) from alignment at C-linearis_contig10:3269493..3274472- >mRNA_C-linearis_contig10.646.1 ID=mRNA_C-linearis_contig10.646.1|Name=mRNA_C-linearis_contig10.646.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1584bp|location=Sequence derived from alignment at C-linearis_contig10:3269493..3274472- (Chordaria linearis ClinC8C monoicous) ATGTACACCGCTGACGCCGCACGGCGGGCGGGGCTATCGCATGCCGAACC GGGCGAGCAAGGGTTGACGGGAAACGGCGCGAACGAGGAGGGAGCGTCCG CAAGAAAAGGGGGAGGACGAAGGGAGCCGCAATCGATGTACACCGCTGAC GCCGCACGGCGGGCGGGGCTATCGCATGCCGAACCGGGCGAGCAAGGGTT GACGGGAAACGGCGCGAACGAGGAGGGAGCGTCCGCAAGAAAAGGGGGAG GACGAAGGGAGCCGCAATCGGGTCGAGTTAACAGCAAATCTCGAGGGCAA GGTGCTACCGGTAACACTGCGGCCAGTAACGCTTCCGTTGTCGCGACGGC AAAGCACGGAGGTCCGAAAAACAGGAAGGAAGACGATGCTGACGGCGAAG AGGGTCGAGTTAACAGCAAATCTCGAGGGCAAGGTGCTACCGGTAACACT GCGGCCAGTAACGCTTCCGTTGTCGCGACGGCAAAGCACGGAGGTCCGAA AAACAGGAAGGAAGACGATGCTGACGGCGAAGAGATATCGCCGTACAGCC TCGCCTTGGCCCGGCCTGGAGCAGCGGTCGCCCCAGCCTCCAAGGGCAGA CGCAAGGGAGCTAGAACGAGGAAATCCGGGCTGTCGCGCCGGGGAGCTAT GCCGGAGGGCGACAGCGCGGCCGCCCAAGAAGCCCACAGATATCGCCGTA CAGCCTCGCCTTGGCCCGGCCTGGAGCAGCGGTCGCCCCAGCCTCCAAGG GCAGACGCAAGGGAGCTAGAACGAGGAAATCCGGGCTGTCGCGCCGGGGA GCTATGCCGGAGGGCGACAGCGCGGCCGCCCAAGAAGCCCACAGGTCACG GCTCCAATCGGAGCGACTACGAACGTTCAGTCTCGCGGGGTTCCCTCTGC GCACGGGGACGGACGGCGACACAACAGTTGTGCCGGCTCTCATCCCGATT CCGGAAGGATTTGGCCAAGTCACGGCTCCAATCGGAGCGACTACGAACGT TCAGTCTCGCGGGGTTCCCTCTGCGCACGGGGACGGACGGCGACACAACA GTTGTGCCGGCTCTCATCCCGATTCCGGAAGGATTTGGCCAAGTGGACGA AAGAGGGCAACGGTCGTACGTGGCTGGCCGCATCATGGAAGCTTTGCGGG AGGGACAAGTCGATTCCATCACCGGCAGGTGGACGAAAGAGGGCAACGGT CGTACGTGGCTGGCCGCATCATGGAAGCTTTGCGGGAGGGACAAGTCGAT TCCATCACCGGCAGGAAGAAAAAGCTCGCGGTACCGTTGTGGCACCGCGC GACGGAGGAGATCGATTCCTCCGGCGCCGGTAGCGTTCTGTACTCGGACT TGATCGGCCAACCGTACTCCGTGCTCATGGGGCCCAAGCGAACGGCACTG GCTGGCAAGCAGGCAACAGGATAGGAAGAAAAAGCTCGCGGTACCGTTGT GGCACCGCGCGACGGAGGAGATCGATTCCTCCGGCGCCGGTAGCGTTCTG TACTCGGACTTGATCGGCCAACCGTACTCCGTGCTCATGGGGCCCAAGCG AACGGCACTGGCTGGCAAGCAGGCAACAGGATAG back to top
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