mRNA_C-linearis_contig10.643.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.643.1
Unique NamemRNA_C-linearis_contig10.643.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.643.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:3198811..3201943 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons8
Model size1298
Cds size693
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.643.1prot_C-linearis_contig10.643.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 3199402..3200796 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927324.8178055-UTR-C-linearis_contig10:3198810..31989711622927324.8178055-UTR-C-linearis_contig10:3198810..3198971Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 3198811..3198971 +
1690879627.104068-UTR-C-linearis_contig10:3198810..31989711690879627.104068-UTR-C-linearis_contig10:3198810..3198971Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 3198811..3198971 +
1622927324.8284016-UTR-C-linearis_contig10:3199353..31994011622927324.8284016-UTR-C-linearis_contig10:3199353..3199401Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 3199354..3199401 +
1690879627.1245391-UTR-C-linearis_contig10:3199353..31994011690879627.1245391-UTR-C-linearis_contig10:3199353..3199401Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 3199354..3199401 +
1622927324.8789186-UTR-C-linearis_contig10:3200796..32008781622927324.8789186-UTR-C-linearis_contig10:3200796..3200878Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 3200797..3200878 +
1690879627.1829827-UTR-C-linearis_contig10:3200796..32008781690879627.1829827-UTR-C-linearis_contig10:3200796..3200878Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 3200797..3200878 +
1622927324.8898919-UTR-C-linearis_contig10:3201115..32012141622927324.8898919-UTR-C-linearis_contig10:3201115..3201214Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 3201116..3201214 +
1690879627.1928282-UTR-C-linearis_contig10:3201115..32012141690879627.1928282-UTR-C-linearis_contig10:3201115..3201214Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 3201116..3201214 +
1622927324.9005928-UTR-C-linearis_contig10:3201548..32017031622927324.9005928-UTR-C-linearis_contig10:3201548..3201703Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 3201549..3201703 +
1690879627.200845-UTR-C-linearis_contig10:3201548..32017031690879627.200845-UTR-C-linearis_contig10:3201548..3201703Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 3201549..3201703 +
1622927324.9106686-UTR-C-linearis_contig10:3201883..32019431622927324.9106686-UTR-C-linearis_contig10:3201883..3201943Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 3201884..3201943 +
1690879627.2089643-UTR-C-linearis_contig10:3201883..32019431690879627.2089643-UTR-C-linearis_contig10:3201883..3201943Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 3201884..3201943 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927324.839319-CDS-C-linearis_contig10:3199401..31995771622927324.839319-CDS-C-linearis_contig10:3199401..3199577Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3199402..3199577 +
1690879627.1378577-CDS-C-linearis_contig10:3199401..31995771690879627.1378577-CDS-C-linearis_contig10:3199401..3199577Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3199402..3199577 +
1622927324.8486555-CDS-C-linearis_contig10:3199816..31999901622927324.8486555-CDS-C-linearis_contig10:3199816..3199990Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3199817..3199990 +
1690879627.1472037-CDS-C-linearis_contig10:3199816..31999901690879627.1472037-CDS-C-linearis_contig10:3199816..3199990Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3199817..3199990 +
1622927324.8594797-CDS-C-linearis_contig10:3200213..32003731622927324.8594797-CDS-C-linearis_contig10:3200213..3200373Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3200214..3200373 +
1690879627.1558673-CDS-C-linearis_contig10:3200213..32003731690879627.1558673-CDS-C-linearis_contig10:3200213..3200373Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3200214..3200373 +
1622927324.86927-CDS-C-linearis_contig10:3200613..32007961622927324.86927-CDS-C-linearis_contig10:3200613..3200796Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3200614..3200796 +
1690879627.1720543-CDS-C-linearis_contig10:3200613..32007961690879627.1720543-CDS-C-linearis_contig10:3200613..3200796Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3200614..3200796 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.643.1

>prot_C-linearis_contig10.643.1 ID=prot_C-linearis_contig10.643.1|Name=mRNA_C-linearis_contig10.643.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=231bp
MGAADLAAARVRDSAQLGLVRKSVREGPRAIRDRSPRLRFGPEEACHLPK
KTWASENQRVREGSAMIAVATSASCRAGVFTGILTKDVVQDIVKVKTAVR
LPSGGEKTVERKALRTIIFILTKKLGAASIAGRQLGATPIDRQHRSAGYT
SKYVTISATELPAHMDPGAQMLRLLDSRGVLAKTASECVSRPMKYFVCTG
HSAGGGTVAARPGKTMSSRSWMCGRETTDA*
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mRNA from alignment at C-linearis_contig10:3198811..3201943+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.643.1 ID=mRNA_C-linearis_contig10.643.1|Name=mRNA_C-linearis_contig10.643.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3133bp|location=Sequence derived from alignment at C-linearis_contig10:3198811..3201943+ (Chordaria linearis ClinC8C monoicous)
GTTGCTGTGTTTCCTGTTGTTCCCCAAGCTGGCTGACGGCCGACGAAGCC
GTCCAGTTCCAGCGGGACATCGGTGTCTCGGACACCTTCATCGAGGGCGC
GGACCAGGCGGGATTTGCCGAGGCGACCATCCTGGCTGCGCTGAAGGAAA
CGCATCTCGCGGTGAGCGTCTTGTCCGTCTTACTTCTAGAACCCCGTGGT
GGTTGCTCGTGGTTTTTTCATTCTCTTGTCCTACCAGTTACGCTGTGTCT
GGAGGGAACGGCACACCGCCTTGAGGTGGTTGCCCCCCCCTCTCTCTCTC
TCTCTCTCTCCCTGTCCACATCCACAAATAGCGTTTTCCTACTGCGGCCG
AATGCGAGCTCGCACGGAGTAAGCGGATTTCGCCCCCCACGGTTCCTTCG
CTCGCCTCTCCCGTGTACGCCCCGTGATTTTTAACCGCCCTTCATCAAGT
AGTAAGTATCTCTCTTTCTCGCTCTCCCTCCAACTCTCCCACGAACAAAC
ACGACGTCTTGACGCCCGACGCCGCCTCTACCTCTGTCTGTAGAGCCGCA
AGACGTTCGGAACCGGCATCCACGTTCGCGGTGCGGGGCACATGGGCGCG
GCCGACCTCGCGGCGGCAAGAGTCCGAGATTCTGCCCAGCTTGGTCTTGT
GCGCAAGTCTGTACGAGAGGGCCCCCGCGCGATCCGGGATCGGAGCCCTC
GCCTCCGTTTCGGGCCAGAAGAGGCGTGCCACCTCCCCAAAAAGACGTGG
GCAAGCGAGAACCAGAGGTGAGAACCCGCGCGTGCATGATCCCGTGGTAC
CCCAGCGGCGCAAGCTGGTGTGTGGTCAGCACGAAGAGAAGGTGGCCGAG
ATGAGACGCTATCCTATTCCCTGTAGCGTAGGCCCTCCTCCTTTTCCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCACTCTCTCACTCTCCTCATCA
CCCGACTCGTTGCTCCTGCCCCGCCGTTCCTCGACCGTCGCGTGGTCCTC
CTCCAGGGTTAGAGAGGGGAGCGCCATGATCGCCGTCGCCACTTCCGCCT
CCTGCCGAGCCGGTGTCTTCACGGGCATCCTCACGAAGGATGTGGTTCAG
GACATCGTCAAAGTCAAGACTGCAGTCAGGCTGCCGAGCGGCGGGGAGAA
GACTGTCGAGCGAAAGGCGCTTCGAACGATGTGAGGACCTTTTTTGACTG
CCTTCTTGTTGTGGCTGGAATGTATTCGTGTTGTTGTTGTTGTGTGTTTG
TCCGGCGAGGGAGGATGTTTGTGTGTATGCGTACGTACATGGATGCACGA
GGCCAATGTCTCACACACCCTCTCTCTTTCACATGTCCATCTTATAGGTT
CGTGTCTCTTGTCTCGTGATCTCATGCCCCCCCGCGTCCGGTCGCTCATT
CAGCATCTTCATCCTGACGAAGAAGCTAGGCGCCGCGTCGATCGCTGGGC
GGCAACTCGGGGCGACACCGATCGACCGGCAGCACCGCTCGGCCGGCTAT
ACCTCCAAGTACGTCACCATTTCGGCGACAGAGCTGCCCGCCCACATGGA
CCCGGGCGCCCAAGTGCGTACAGTACGCGAGGTTCGCGCCTGGCCCATTT
CCTACGAGGTAGTAGGTAGCCTCTTCTCTGAGTTGACAAGATTTATTTCT
CGGTCGGTCGTTTGCTATCTATCTACGGCATCCCGTGTTGTTTGTTGTTC
ATTGGGAGGGAGACGCGGCGCGCGTGAGCAATCACAAGGTGCGCTCCCCC
CCTGTCGGTGTCGTCGTCCTATTTTACTTTATTGTTTGTGTCTTGCTGTG
CAGATGCTGCGACTGTTAGATTCGCGTGGCGTGCTCGCGAAGACCGCCTC
GGAGTGTGTGTCAAGACCAATGAAATATTTCGTGTGCACCGGCCATTCTG
CCGGGGGAGGGACTGTGGCTGCCCGCCCCGGGAAGACGATGTCGAGCCGG
AGTTGGATGTGTGGACGGGAGACTACCGACGCCTAGGGAAGACGGCCGAG
GGCATCCACGAGCTATGCTTAGTGTGCCGGAAGCTGGACATGGAAGGGAA
ACACGACCCGGTCGCGATGTGAGAGCACACTGTCTCGTTTTGGGTCTCAG
GGGCGAGGAAGGGTGGGTAGCGACGAGGAGGAGTAACCGTTGTTGTTGCC
TGGTGCTTGCTGCCCGTGCTGGTGTGCTTCCGATTTCTCTTTGATCCTCT
CTGATCCTCTCTCTCTCTCTCGCTCTCTGATCCTCTCTCCCGATCTCTCG
CTTTTTCTTTGCGTTTGTCTGCTGTGATGATGTCGCGACTTTGTACCTGG
CCAAGCCCAGGAAGGTTCGCTCTTCTTCCTCTCGGGCAGGTCCACATCGG
CCGTCATTCAGCTGGCGAAGTCCACCGCCCGCCTGTGTGGCTTCTCGGTC
TACGGCAAGTGTACTCGATTTGTCTGCGATGTACTGCATTCCCCGTCGTT
TTTGCCGCCACCGTCAGTTTACCGCGCGAGAGACAGACAGACAGACGCGC
TTTCTTTGTGGCCCTGCCTTCTCTCTTCTTGCTTACGGGTTTCTCCGGTG
TGCTCGTCTCGCTTCGGGCACCGACTCTACCTCCTATCACCTCACCCCCT
GGCCTCGCCTCTCCGCCCCGTTTTTTCGATATACATACATGCACGCATAT
TGTCGCGTCAGCCATCTCAACGAGCCTTGGTATTTGATGCGCCACCCCCT
CGTCCATTTCACCTTGTCCCTCTCGTCAACTCTGGTAGGTACTGAAAAAC
GATGAGCTCGCTTCGATTGGAGACCCTTGGGCGTTCCAAGGCGACAAAGC
CTGGAAGAGGGGCTCCCCGTTCCATCACGCCCGTGAACCCGCCCAGGAAA
ACGTCTTCTTTTTCTCGGAGCGGGTCTACTTCGACAGCCACAAGTAAGTG
CGTCTTTTTTTTCTTTTCTCGCTCGTCCGTGTTGTTTCCATCTTGATCTT
GTTCTCTCCGGCGTGTGTGTGTTTATGAGGCGACAGAACGGTGTATTGTA
GCTTTGTCCACTTGACCTCCTCTCTTGTACTCTCCCACCTTGTGCCTCCC
CCCGCCCGTTGTGGTACCACCAGGAAAAAAGTGGTGGAGCCGGGCTTCAC
GTTCGAGAGGAGCCCGGAGGCGAGGCTCCAGGC
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Coding sequence (CDS) from alignment at C-linearis_contig10:3198811..3201943+

>mRNA_C-linearis_contig10.643.1 ID=mRNA_C-linearis_contig10.643.1|Name=mRNA_C-linearis_contig10.643.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1386bp|location=Sequence derived from alignment at C-linearis_contig10:3198811..3201943+ (Chordaria linearis ClinC8C monoicous)
ATGGGCGCGGCCGACCTCGCGGCGGCAAGAGTCCGAGATTCTGCCCAGCT
TGGTCTTGTGCGCAAGTCTGTACGAGAGGGCCCCCGCGCGATCCGGGATC
GGAGCCCTCGCCTCCGTTTCGGGCCAGAAGAGGCGTGCCACCTCCCCAAA
AAGACGTGGGCAAGCGAGAACCAGAGATGGGCGCGGCCGACCTCGCGGCG
GCAAGAGTCCGAGATTCTGCCCAGCTTGGTCTTGTGCGCAAGTCTGTACG
AGAGGGCCCCCGCGCGATCCGGGATCGGAGCCCTCGCCTCCGTTTCGGGC
CAGAAGAGGCGTGCCACCTCCCCAAAAAGACGTGGGCAAGCGAGAACCAG
AGGGTTAGAGAGGGGAGCGCCATGATCGCCGTCGCCACTTCCGCCTCCTG
CCGAGCCGGTGTCTTCACGGGCATCCTCACGAAGGATGTGGTTCAGGACA
TCGTCAAAGTCAAGACTGCAGTCAGGCTGCCGAGCGGCGGGGAGAAGACT
GTCGAGCGAAAGGCGCTTCGAACGATGGTTAGAGAGGGGAGCGCCATGAT
CGCCGTCGCCACTTCCGCCTCCTGCCGAGCCGGTGTCTTCACGGGCATCC
TCACGAAGGATGTGGTTCAGGACATCGTCAAAGTCAAGACTGCAGTCAGG
CTGCCGAGCGGCGGGGAGAAGACTGTCGAGCGAAAGGCGCTTCGAACGAT
CATCTTCATCCTGACGAAGAAGCTAGGCGCCGCGTCGATCGCTGGGCGGC
AACTCGGGGCGACACCGATCGACCGGCAGCACCGCTCGGCCGGCTATACC
TCCAAGTACGTCACCATTTCGGCGACAGAGCTGCCCGCCCACATGGACCC
GGGCGCCCAACATCTTCATCCTGACGAAGAAGCTAGGCGCCGCGTCGATC
GCTGGGCGGCAACTCGGGGCGACACCGATCGACCGGCAGCACCGCTCGGC
CGGCTATACCTCCAAGTACGTCACCATTTCGGCGACAGAGCTGCCCGCCC
ACATGGACCCGGGCGCCCAAATGCTGCGACTGTTAGATTCGCGTGGCGTG
CTCGCGAAGACCGCCTCGGAGTGTGTGTCAAGACCAATGAAATATTTCGT
GTGCACCGGCCATTCTGCCGGGGGAGGGACTGTGGCTGCCCGCCCCGGGA
AGACGATGTCGAGCCGGAGTTGGATGTGTGGACGGGAGACTACCGACGCC
TAGATGCTGCGACTGTTAGATTCGCGTGGCGTGCTCGCGAAGACCGCCTC
GGAGTGTGTGTCAAGACCAATGAAATATTTCGTGTGCACCGGCCATTCTG
CCGGGGGAGGGACTGTGGCTGCCCGCCCCGGGAAGACGATGTCGAGCCGG
AGTTGGATGTGTGGACGGGAGACTACCGACGCCTAG
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