mRNA_C-linearis_contig10.642.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.642.1
Unique NamemRNA_C-linearis_contig10.642.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.642.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:3197193..3198561 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size439
Cds size438
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.642.1prot_C-linearis_contig10.642.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 3197193..3198560 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927324.5853748-CDS-C-linearis_contig10:3197192..31972271622927324.5853748-CDS-C-linearis_contig10:3197192..3197227Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3197193..3197227 +
1690879626.946292-CDS-C-linearis_contig10:3197192..31972271690879626.946292-CDS-C-linearis_contig10:3197192..3197227Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3197193..3197227 +
1622927324.59835-CDS-C-linearis_contig10:3197451..31975491622927324.59835-CDS-C-linearis_contig10:3197451..3197549Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3197452..3197549 +
1690879626.9574444-CDS-C-linearis_contig10:3197451..31975491690879626.9574444-CDS-C-linearis_contig10:3197451..3197549Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3197452..3197549 +
1622927324.6085172-CDS-C-linearis_contig10:3197868..31980061622927324.6085172-CDS-C-linearis_contig10:3197868..3198006Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3197869..3198006 +
1690879626.9666378-CDS-C-linearis_contig10:3197868..31980061690879626.9666378-CDS-C-linearis_contig10:3197868..3198006Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3197869..3198006 +
1622927324.6191359-CDS-C-linearis_contig10:3198393..31985601622927324.6191359-CDS-C-linearis_contig10:3198393..3198560Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3198394..3198560 +
1690879626.975664-CDS-C-linearis_contig10:3198393..31985601690879626.975664-CDS-C-linearis_contig10:3198393..3198560Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3198394..3198560 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.642.1

>prot_C-linearis_contig10.642.1 ID=prot_C-linearis_contig10.642.1|Name=mRNA_C-linearis_contig10.642.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=146bp
QATSYGRSRLSTESHPASAGSSLIGRGRRSLMGAADVGADDALRGTLVAL
DPDIFGLQRDQVTSNYHLALFLSALPSVVLAWAKQHPDAVGVHQELRRYC
ERLPQAATAPVVGELREAAGHLNAVQDAPPGRHGCHDICLWPPSVE
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mRNA from alignment at C-linearis_contig10:3197193..3198561+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.642.1 ID=mRNA_C-linearis_contig10.642.1|Name=mRNA_C-linearis_contig10.642.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1369bp|location=Sequence derived from alignment at C-linearis_contig10:3197193..3198561+ (Chordaria linearis ClinC8C monoicous)
CAGGCGACGAGTTACGGCAGGAGCCGTCTCTCGACGTGAGGGGACTGGTG
TTGCTTCCTTCCATCCAACCTTGTGCCATGCATGCGCGTACCTCTCTCCA
GCCTCTTGAACCTTCCGCTACGCCTGGGCAGCACGCGCGTGTAAATGCGC
TGACGACGCTGCCGTCGAGGGGTCGACGTGATCTCATCACATCCTGCTCC
CTTTGCGTTGGCCCCGCTGTCTCTGCGCTTTCCCCCGCCTCCAACCTTTT
GTCTGGCAGGGAGAGCCACCCCGCGTCGGCAGGGAGCTCGCTCATCGGGC
GGGGGCGTAGGTCGCTGATGGGTGCTGCAGACGTCGGAGCTGATGACGCG
CTGCGAGGTCGGTCCGTGTTCGCGCGCTTAGTTTTGTCTAGCCTAGCTAC
TCTAAAATGGTTTGTCTTTCCTTTTGCAGGACGGCAGGCGGCAAAACAAA
GTCGTATCATAGTAGTAGGAGTAGCGATGGTCTTGCCCGCATGCGCGCAA
ACCGCCGAGGCGTATTATCTTTTTTCGTCGTTTGGCGGCGGCGGTGTCCG
TGTTGTTGGTGGCGCTTGCACTCCATCCGGTTGATGCACTACGTGCCCTT
TCCTCTCGAAACACGTGGGTGGTTACAAATACCCACACGTTCGGCCGGCG
TCACCACACCCATCCATTTTTGTCAGGTACGCTCGTCGCCCTGGACCCCG
ACATCTTTGGGCTGCAGAGGGACCAGGTGACGTCTAACTACCACCTCGCC
CTCTTCTTGAGCGCCTTGCCCTCGGTGGTGCTTGCTTGGGCGAAGCAGCA
TCCCGATGCCGTCGGTGAGTACGTCGGGTCGAACGTCTGGGTCTACTGCC
TCCTCCCCCCTCCCCTTCCCCCCCGAAACGCGGTCTGGACCGACGTACGC
ATACAGAAGTACACACATACATACATACGTACATACATACACACATACAT
GGGTGTTTGTTTGTTCGTTCGTTTGTTTGTTTGGCTGGAAGCGAAAACGT
ACCCTGGGGGGGTTATATATTTGTTTGTTTGTTTATACTCTACCAGACAT
ATATTTGGCCCCAAGGTTGGTTGTGTTGGTCCATCTTGGTGCGCAGTTGT
TGCCGGTGCCGCCGCCGCCGCCTCCTCTTTCCTAATCCTCCATCCCGTTT
CGATGGACGTCCGCGGTAATATGCTTGCACTCCCGGTGGGCCTCCGAGTA
GGCGTCCACCAGGAGTTGAGGCGCTACTGTGAGCGCCTGCCGCAGGCAGC
CACAGCCCCTGTTGTGGGCGAGTTGAGGGAGGCGGCCGGCCACCTCAACG
CGGTCCAGGATGCCCCCCCCGGCCGGCACGGGTGCCACGACATCTGCTTG
TGGCCCCCTAGCGTGGAGG
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Coding sequence (CDS) from alignment at C-linearis_contig10:3197193..3198561+

>mRNA_C-linearis_contig10.642.1 ID=mRNA_C-linearis_contig10.642.1|Name=mRNA_C-linearis_contig10.642.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=876bp|location=Sequence derived from alignment at C-linearis_contig10:3197193..3198561+ (Chordaria linearis ClinC8C monoicous)
CAGGCGACGAGTTACGGCAGGAGCCGTCTCTCGACCAGGCGACGAGTTAC
GGCAGGAGCCGTCTCTCGACGGAGAGCCACCCCGCGTCGGCAGGGAGCTC
GCTCATCGGGCGGGGGCGTAGGTCGCTGATGGGTGCTGCAGACGTCGGAG
CTGATGACGCGCTGCGAGGGAGAGCCACCCCGCGTCGGCAGGGAGCTCGC
TCATCGGGCGGGGGCGTAGGTCGCTGATGGGTGCTGCAGACGTCGGAGCT
GATGACGCGCTGCGAGGTACGCTCGTCGCCCTGGACCCCGACATCTTTGG
GCTGCAGAGGGACCAGGTGACGTCTAACTACCACCTCGCCCTCTTCTTGA
GCGCCTTGCCCTCGGTGGTGCTTGCTTGGGCGAAGCAGCATCCCGATGCC
GTCGGTACGCTCGTCGCCCTGGACCCCGACATCTTTGGGCTGCAGAGGGA
CCAGGTGACGTCTAACTACCACCTCGCCCTCTTCTTGAGCGCCTTGCCCT
CGGTGGTGCTTGCTTGGGCGAAGCAGCATCCCGATGCCGTCGGCGTCCAC
CAGGAGTTGAGGCGCTACTGTGAGCGCCTGCCGCAGGCAGCCACAGCCCC
TGTTGTGGGCGAGTTGAGGGAGGCGGCCGGCCACCTCAACGCGGTCCAGG
ATGCCCCCCCCGGCCGGCACGGGTGCCACGACATCTGCTTGTGGCCCCCT
AGCGTGGAGGCGTCCACCAGGAGTTGAGGCGCTACTGTGAGCGCCTGCCG
CAGGCAGCCACAGCCCCTGTTGTGGGCGAGTTGAGGGAGGCGGCCGGCCA
CCTCAACGCGGTCCAGGATGCCCCCCCCGGCCGGCACGGGTGCCACGACA
TCTGCTTGTGGCCCCCTAGCGTGGAG
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