mRNA_C-linearis_contig10.641.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.641.1
Unique NamemRNA_C-linearis_contig10.641.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.641.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:3193114..3193432 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size321
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927326.661433-CDS-C-linearis_contig10:3193113..31934311622927326.661433-CDS-C-linearis_contig10:3193113..3193431Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3193114..3193431 +
1690879627.9564085-CDS-C-linearis_contig10:3193113..31934311690879627.9564085-CDS-C-linearis_contig10:3193113..3193431Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3193114..3193431 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.641.1prot_C-linearis_contig10.641.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 3193114..3193431 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.641.1

>prot_C-linearis_contig10.641.1 ID=prot_C-linearis_contig10.641.1|Name=mRNA_C-linearis_contig10.641.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=106bp
HGCKTTSTHTLAALLGGAMAESDSSVEDVHVGRAPCPEDYTPHAAAIKGK
RLYDTLEPSQRVMTQAQLLNTATCVVKSEPFGDCFFWCFYNSLPEFEPWN
VWRDDK
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mRNA from alignment at C-linearis_contig10:3193114..3193432+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.641.1 ID=mRNA_C-linearis_contig10.641.1|Name=mRNA_C-linearis_contig10.641.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=319bp|location=Sequence derived from alignment at C-linearis_contig10:3193114..3193432+ (Chordaria linearis ClinC8C monoicous)
CACGGCTGCAAGACTACAAGCACACACACGCTCGCAGCACTGCTTGGGGG
GGCGATGGCGGAATCGGATTCTTCGGTGGAGGATGTGCATGTTGGCAGGG
CTCCGTGTCCAGAAGACTACACGCCGCACGCTGCAGCAATCAAAGGCAAG
AGGTTGTATGACACGCTTGAGCCGTCGCAGAGGGTGATGACCCAGGCGCA
GCTGCTCAACACGGCAACATGTGTCGTGAAGTCGGAGCCCTTCGGAGATT
GTTTTTTCTGGTGCTTCTACAACTCTCTGCCGGAGTTCGAACCTTGGAAT
GTGTGGAGGGATGACAAGA
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Coding sequence (CDS) from alignment at C-linearis_contig10:3193114..3193432+

>mRNA_C-linearis_contig10.641.1 ID=mRNA_C-linearis_contig10.641.1|Name=mRNA_C-linearis_contig10.641.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at C-linearis_contig10:3193114..3193432+ (Chordaria linearis ClinC8C monoicous)
CACGGCTGCAAGACTACAAGCACACACACGCTCGCAGCACTGCTTGGGGG
GGCGATGGCGGAATCGGATTCTTCGGTGGAGGATGTGCATGTTGGCAGGG
CTCCGTGTCCAGAAGACTACACGCCGCACGCTGCAGCAATCAAAGGCAAG
AGGTTGTATGACACGCTTGAGCCGTCGCAGAGGGTGATGACCCAGGCGCA
GCTGCTCAACACGGCAACATGTGTCGTGAAGTCGGAGCCCTTCGGAGATT
GTTTTTTCTGGTGCTTCTACAACTCTCTGCCGGAGTTCGAACCTTGGAAT
GTGTGGAGGGATGACAAGCACGGCTGCAAGACTACAAGCACACACACGCT
CGCAGCACTGCTTGGGGGGGCGATGGCGGAATCGGATTCTTCGGTGGAGG
ATGTGCATGTTGGCAGGGCTCCGTGTCCAGAAGACTACACGCCGCACGCT
GCAGCAATCAAAGGCAAGAGGTTGTATGACACGCTTGAGCCGTCGCAGAG
GGTGATGACCCAGGCGCAGCTGCTCAACACGGCAACATGTGTCGTGAAGT
CGGAGCCCTTCGGAGATTGTTTTTTCTGGTGCTTCTACAACTCTCTGCCG
GAGTTCGAACCTTGGAATGTGTGGAGGGATGACAAG
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