mRNA_C-linearis_contig10.640.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig10.640.1 vs. uniprot
Match: D7G273_ECTSI (Transmembrane protein 5 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G273_ECTSI) HSP 1 Score: 328 bits (842), Expect = 3.620e-103 Identity = 175/350 (50.00%), Postives = 232/350 (66.29%), Query Frame = 2
Query: 272 TYSVIILSPSVKPSSQFRDQQRVRFFTPSPEGSGLVSMQFVDLPSRWPPAVGDS--PFHVKHP-HGVDKRVRLVFLRRELDSWPRSQQANLQAWCENDAETTVIVIIDETCAWAQL--NLPTTCQSNVVRIYPFNTIRSDLEYQEAYMPLGPSHTFPFVAREKVKQANDRAMFLNLQVSQSTSPRRESVVAITEEYGRLHPEVPIWAQKQGLDAQRWQALLLHSKFTICPGGHSPETYRMWEALESGSIPIVSRLDYHYPVYSQHANVTCGVGDVSWNTVAGSPFAEEVSVESWEDLPALLDWLRAMTQEDINKLQEDCMAWYAARMARTYSSLLNFGEGHDMFPQLGPV 1306
TYSVII+ S+ RD++RVR F + +VSMQF D R A DS PF V HP GVDKRVRLV+L+ + +Q ++LQA CE+ ETTV+VI DETC +L LP +C++NVVR++PFN R+D + A++PLGP TFPFV+ ++ A+ R++ NLQV TS RR +V I +Y +P++ + ++ + WQ L+L SKFTICP G +P T+R+WEALE GSIPIVS+LD+ P + TCG GDV+WN VA SPF E VSV W +LPALLD LR + INKLQEDC+AW+A+ M +TY+S+LNFGEGHD+FPQ GP+
Sbjct: 84 TYSVIIVERLHHTSNLIRDKERVRAFEDG--NTTVVSMQFADTLLR---AYDDSAPPFFVGHPAEGVDKRVRLVYLKEFWNKINDNQASHLQASCEDPTETTVLVISDETCELPELPPGLPPSCRANVVRVFPFNKPRTDGLPRNAFLPLGPRDTFPFVSEDRRPLASSRSLLFNLQVRPDTSDRRAELVDIASQYESDNPDLECATNRPHINPKEWQDLVLDSKFTICPAGRNPGTFRLWEALEGGSIPIVSKLDFTQPALGALSTQTCGDGDVAWNIVAASPFVEAVSVNDWHELPALLDRLRQEPDDYINKLQEDCVAWHASAMTQTYTSVLNFGEGHDLFPQDGPL 428
BLAST of mRNA_C-linearis_contig10.640.1 vs. uniprot
Match: D7G272_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G272_ECTSI) HSP 1 Score: 319 bits (817), Expect = 2.910e-100 Identity = 166/359 (46.24%), Postives = 231/359 (64.35%), Query Frame = 2
Query: 263 SNMTYSVIILSPSVKPSSQFRDQQRVRFFTPSPEGSGLVSMQFVDLPSRWPPAVGDS-PFHVKHPHG-----VDKRVRLVFLRRELDSWPRSQQANLQAWCENDAETTVIVIIDETCAWAQL--NLPTTCQSNVVRIYPFNTIRSDLEYQEAYMPLGPSHTFPFVAREKVKQANDRAMFLNLQVSQSTSPRRESVVAITEEYGRLHPEVPIWAQKQGLDAQRWQALLLHSKFTICPGGHSPETYRMWEALESGSIPIVSRLDYHYPVYSQHANVTCGVGDVSWNTVAGSPFAEEVSVESWEDLPALLDWLRAMTQEDINKLQEDCMAWYAARMARTYSSLLNFGEGHDMFPQLGPVLHT 1315
S YSVI++ S+ R+++RVR F S + +VS+QF + P G + PF V HP G VDK+VR+V L+ Q ++LQA CE+ ETTV++I DETC + L +P +C+SNVVR +PFN R++ E + Y+PLGP TFPFV+ ++ A+ R++F NLQV T RR ++ Y +P + + + WQ L+L SKFT+CP G +PET+R+WEALE+GSIPIVS+LD+ +PV +N TCG GD++WNTVA SPFA++VSV +W +LP LLD L+ E INKLQE+C+AWY+ M +TY+SLLNFGEGHD+FPQ GP+ +
Sbjct: 14 SKTRYSVIVVEVEHHTSNLAREKERVRAFEDS-TNTAVVSVQFANPCPHAPITEGSAAPFFVSHPEGDEEAAVDKKVRVVHLKDIGTHVKPYQASHLQASCEDPTETTVLIISDETCRTSGLPVGIPPSCRSNVVRAFPFNQDRANEEPRRPYLPLGPRDTFPFVSDDRRPLASSRSLFFNLQVRPETQGRRGELIETASIYQLSNPGLECATNRPSISKTAWQELVLDSKFTLCPAGRNPETFRLWEALEAGSIPIVSKLDFTHPVVGTKSNTTCGDGDIAWNTVAASPFAKQVSVNNWLELPDLLDRLQREPDEYINKLQEECVAWYSMAMTQTYTSLLNFGEGHDLFPQEGPIFDS 371
BLAST of mRNA_C-linearis_contig10.640.1 vs. uniprot
Match: A0A6H5K309_9PHAE (Exostosin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K309_9PHAE) HSP 1 Score: 284 bits (727), Expect = 3.300e-86 Identity = 155/384 (40.36%), Postives = 231/384 (60.16%), Query Frame = 2
Query: 197 DRTWWKRRGVMGSSVHADGVDQSNMTYSVIILSPSVKPSSQFRDQQRVRFFTPSPEGSGLVSMQFVDLPSRWPPAVGDSPFHVKHPHGVDKRVRLVFLRRELDSWPR---SQQANLQAWCENDAETTVIVIIDETCA--WAQLNLPTTCQSNVVRIYPFNTIRSDLEYQEAYMPLGPSHTFPFVAREKVKQANDRAMFLNLQVSQSTSPRRESVVAITEEYGRLHPEVPIWAQKQ-GLDAQRWQALLLHSKFTICPGGHSPETYRMWEALESGSIPIVSRLDYHYPVYSQHANV-TCGVGDVSWNTVAGSPFAEEVSVESWEDLPALLDWLRAMTQEDINKLQEDCMAWYAARMARTYSSLLNFGEGHDMFPQLGPVLHT*ENT 1327
D +W +G G G D+ + YSVI+++ + +PS+ FRD++RV+ + G++S++F D R V D F V H ++R+R++ +D +Q ++L+A CE+ E T++++ DETC + LP C SNV R YP+N ++ E + AY+PLGP F FV+ + A+ R + LN V TS RR + + +Y LH ++ I+A L+A +W+ LLL S+FT+ PGGH+PET+R +EALE+GSIPI+S+ DY P + + V CG GD +WNTVA SPFA+ VSV +W++LP LLD L A T +++LQ DC WY A M RTY+SLL+FG+G D++PQ GP+L T
Sbjct: 45 DGSWRTAKGTKGR-----GRDEK-VAYSVIVVASNPRPSNLFRDRKRVKAHS-----RGVISVRFADPVPR--DVVRDYAFGVAHDKRAERRLRMIHTADLVDKDQAPDPNQMSHLKAACEDPTERTLLLVTDETCLNLYLPTKLPGACWSNVARNYPYNRPSAEQEQRNAYIPLGPRDNFAFVSASERSPASTRPVLLNFVVDPETSSRRAHLAEVVSDYQALHTDLEIYASTTPDLNASQWRDLLLRSRFTVSPGGHNPETFRTFEALEAGSIPIISKSDYTDPAFHKEIRVEACGTGDAAWNTVAASPFAQAVSVNTWDELPELLDRLDAETDSFLDRLQADCGEWYDALMNRTYASLLHFGDGLDLWPQAGPILADYRKT 415
BLAST of mRNA_C-linearis_contig10.640.1 vs. uniprot
Match: D7FHD8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHD8_ECTSI) HSP 1 Score: 202 bits (513), Expect = 1.100e-55 Identity = 125/356 (35.11%), Postives = 187/356 (52.53%), Query Frame = 2
Query: 269 MTYSVIILSPSVKPSSQFRDQQRVRFFTPSPEGSGLVSMQFVD-LPSRWPPAVGDSPFHVKHPHGVDKRVRLVFLRRELDSWPRSQQANLQAWCENDAETTVIVIIDETCAWAQLNLPTTCQSNVVRIYPFNTIRSDLEYQEAYMPLGPSHTFPFVAREKVKQANDRAMFLNLQVSQSTSPRRESVVAITEEYGRLHPEVPIWAQKQ-GLDAQRWQALLLHSKFTICPGGHSPETYRMWEALESGSIPIVSRLDYHYPVYSQHANV-TCGVGDVSWNTVAGSPFAEEVSVESWEDLPALLDWLRAMTQEDINKLQEDCMAWYAARMARTYSSLLNFGEGHDMFPQLGPVLHT*ENT 1327
++YSVI+++ + +PS+ FRD++RV+ + G++S++F D +P + VG+ F V H ++R+R++ +D ++ N + + A V+V + C QL L T +V TS RR + + +Y LH ++ I+A L+A +W+ LLL S+FT+ PGGH+PET+R +EALE GSIPI+S+ DY P + + V CG GD +WNTVA SPFA VSV++WEDLP LLD L A +++LQ DC AWY A M RTY+SLL+FG+G D++PQ GP+L T
Sbjct: 61 VSYSVIVVASNPRPSNLFRDRKRVKAHS-----RGVISVRFADPVPRNF---VGEHAFGVAHDERAERRLRMIHTADLVDK-DQAPDPNQEPLSPHQAPGRVLV---KRCP--QLPLQQT-----------------------------------------------------EVDPETSSRRARLAEVVSDYQALHADLEIYASTAPDLNASQWRDLLLRSRFTVSPGGHNPETFRTFEALEGGSIPIISKSDYTDPAFHKEIRVEACGTGDAAWNTVAASPFARAVSVDTWEDLPELLDRLHAEPDSFLDRLQADCGAWYDALMNRTYASLLDFGDGLDLWPQAGPILADYRKT 349
BLAST of mRNA_C-linearis_contig10.640.1 vs. uniprot
Match: A0A7S1XDT6_9RHOD (Hypothetical protein n=2 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XDT6_9RHOD) HSP 1 Score: 84.7 bits (208), Expect = 9.150e-14 Identity = 80/287 (27.87%), Postives = 126/287 (43.90%), Query Frame = 2
Query: 461 VDKRVRLVFLRRELDSWPRSQQANLQAWCENDAETTVIVIIDETCAWAQLNLPTTCQSNVVRIYP----FNTIRSDLEYQEAYMPLGPSHTFPFVAR----EKVKQANDRAMFLNLQVSQSTSPRRESVVAITEEYG--------------RLHPEVPIWAQKQG---LDAQRWQALLLHSKFTICPGGHSPETYRMWEALESGSIPIVSRLDYHYPVYSQHANVTCGVGDVSWN-TVAGSPFAEEVSVESWEDLPALLDWLRAMTQEDINKLQEDCMAWYAARMAR 1243
D + V L + LD + ++A++ A C+ + ++ DE C +L Q P FNT Y+PLGP F R ++K+ DR +N S+ TS R+ + I E+ L +W Q+ G L + ++ +L S FT+ P GH+PE+YR++EA+E+GSIP+++ LD Y HA GD W GSP + ++ W+D+P +L L + N+ QE + WY M R
Sbjct: 160 TDTQPPCVLLTKSLDRGDQWRKAHMPA-CK------LFLVADEYCDGLKLQFNNLIQLRQYEGRPHFAHFNT--------STYVPLGPRADFAAAFRGMELTELKRPLDRRYIVNAIYSEDTSQSRKELTRILEKDADFLKLITSSTGSNRALIRIAKVWTQRLGGDHLSSDQYAKVLAESMFTLSPVGHNPESYRIFEAIEAGSIPVIA-LDQ---AYLSHA-----CGDPLWRYRETGSPI---IFIDRWQDIPRVLRELISNPAALANR-QEAVVKWYREFMKR 418
BLAST of mRNA_C-linearis_contig10.640.1 vs. uniprot
Match: A0A7S1NVQ5_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NVQ5_9EUGL) HSP 1 Score: 82.8 bits (203), Expect = 2.550e-13 Identity = 75/283 (26.50%), Postives = 106/283 (37.46%), Query Frame = 2
Query: 512 PRSQQANLQAWCENDAETTVI--VIIDETCAW-------AQLNLPTTCQSNVVRIY----PFNTIRSDLEYQEAYMPLGPSHTFPFVAREKVKQANDRAMFLNLQVSQSTSPRRESVVAITEEYGRLHPEVPIWAQKQGLD---AQRWQ----------------ALLLHSKFTICPGGHSPETYRMWEALESGSIPIVSRLDYHYPVYSQHANV--TCGVGDVSWNTVAGSPFAEEVSVESWEDLPALLDWLRAMTQEDINKLQEDCMAWYAARMARTYSSL 1258
PR W + I ++ DE C W + L L T N+VR P + Q Y+PLG SH FP + R N S +T+ R+ + I EE + W QG+ Q W A++ S FT+ P GH+ ET+RMWEAL+SGSIP++ QH V CG + AG + V+ W +LP L+ A + Q+ + W A + Y L
Sbjct: 98 PRHSDVQFIPWVRETLKRRAIWFLLADEWCEWKGPGLYHSDLVLKTYYHENLVRPKHVKAPPGALPQPRPGQIRYLPLGASHRFPLPNKSPALPVAQRKYLFNYMASTNTAETRKVLRGIVEEMNKT------WTASQGIFQHYTQHWSGGYQTSAGYMEPEDFSAVMQQSVFTLTPFGHAMETFRMWEALQSGSIPVL-----------QHPKVDPACGHSLAGFMLKAGGIEPPLLFVKDWGELPELMQKAAANIAA-YQERQDRVLQWQQALKGQLYGDL 362
BLAST of mRNA_C-linearis_contig10.640.1 vs. uniprot
Match: A0A2R5G5S0_9STRA (UDP-D-xylose:ribitol-5-phosphate beta1,4-xylosyltransferase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G5S0_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 3.160e-13 Identity = 62/197 (31.47%), Postives = 98/197 (49.75%), Query Frame = 2
Query: 695 YMPLGPSHTFPFVAREK-VKQANDRAMFLNLQVSQSTSPRRESVVAITEEYGRLHP--------EVPIWAQ-----KQGLDAQRWQALLLHSKFTICPGGHSPETYRMWEALESGSIPIVSRLDYHYPVYSQHANVTCGVGDVSWNTVAGSPFAEEVSVESWEDLPALLDWLRAMTQEDINKLQEDCMAWYAARMAR 1243
Y PLGP F V + V A R +N S ++ PRR+ E ++P W Q K + ++++ +LL SKFT+CP GH+PE YR++EA E+GS+P++ + Y V + +N + D +G+PF V ++SW DLP LL+ + + Q + + Q AWYA M++
Sbjct: 300 YFPLGPRAEFERVDQTTGVPAARKRQYAINFVGSPTSIPRRKLRDYFQSETWTMNPLAKSSYIHVTDTWTQTVSVEKGYITPKQYREVLLDSKFTLCPMGHNPEAYRIYEACEAGSVPVLVTKEEEY-VNHKCSNAFQPLLD------SGAPF---VILDSWNDLPQLLEIIHS-NQTFVEEKQRAVRAWYAEYMSK 485
BLAST of mRNA_C-linearis_contig10.640.1 vs. uniprot
Match: A0A2R5GRG6_9STRA (UDP-D-xylose:ribitol-5-phosphate beta1,4-xylosyltransferase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GRG6_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 9.420e-13 Identity = 64/192 (33.33%), Postives = 95/192 (49.48%), Query Frame = 2
Query: 695 YMPLGPSHTFPFVAREKVKQANDRAMFLNLQVSQSTSPRRESVVAI---TEEYGRLHPEVPIWAQKQGLDAQ------RWQALLLHSKFTICPGGHSPETYRMWEALESGSIPIVSRLDYHYPVYSQHANVTCGVGDVSWNTVAGSPFAEEVSVESWEDLPALLDWLRAMTQEDINKLQEDCMAWYAARMAR 1243
Y+PLGP F V V+ +R N S ++ R+ V + +E+Y V W +KQ A ++ +L+ S FT+CP GH+PE YR++EA E+GSIPIV +Y Y H C + T G+PF V + SW +LPA L+++ E I ++Q D M WY+ M +
Sbjct: 371 YLPLGPREEFKRVYANDVRLVRERKYKFNFMGSLTSLSRKVLVKELGPSSEKYPSFVWVVSKW-KKQLTRANGYITPVEYKQILVDSVFTLCPQGHNPEAYRIYEACEAGSIPIVVLDEY----YRSHE---CEGAFLPLIT-QGAPF---VFLNSWTELPAYLEYI-LQHPERIQQMQMDTMEWYSKFMTK 549
BLAST of mRNA_C-linearis_contig10.640.1 vs. uniprot
Match: A0A7S2SIR8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SIR8_9STRA) HSP 1 Score: 77.4 bits (189), Expect = 2.900e-11 Identity = 64/224 (28.57%), Postives = 96/224 (42.86%), Query Frame = 2
Query: 695 YMPLGPSHTFPFVAREKVKQANDRAMFLNLQVSQSTSPRR------------------------ESVVAITEEY--------GRLHPEVPIWAQKQGLDAQRWQALLLHSKFTICPGGHSPETYRMWEALESGSIPIVSRLDYHYPVYSQHANVTCGVGDV--SWNTV--AGSPFAEEVSVESWEDLPALLDWLRAMTQEDINKLQEDCMAWYAARMARTYSSL 1258
Y+PLGP F V + VKQ R N+ V+ T+ R ++ IT + G L EV ++ + + A ++ +LL S FT+CP GH+PETYR++EA E+GSIPIV T GD W +G+PF + V W + +L LRA + +LQ D +WY + M +++
Sbjct: 296 YLPLGPRSEFQAVKAQDVKQPPKRQYLFNMMVTLETNHNRTRLHWAVMRLKWADPGIEEVKSSSSTLPPITACFIHNAKRWSGSLPSEV---SKDKAMPAGHYREVLLDSVFTLCPNGHNPETYRLFEAAEAGSIPIVEE--------------TLSSGDCLNPWRPFKDSGAPF---IWVTDWSTIGEVLKELRADPSR-VQRLQSDLRSWYVSFMTTAITNV 498
BLAST of mRNA_C-linearis_contig10.640.1 vs. uniprot
Match: A0A7S2SHX6_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SHX6_9STRA) HSP 1 Score: 67.8 bits (164), Expect = 4.270e-8 Identity = 60/214 (28.04%), Postives = 92/214 (42.99%), Query Frame = 2
Query: 695 YMPLGPSHTFPFVAREKVKQANDRAMFLNLQVSQSTSPRRESVVAITEEYGRLHP------------EVPIWAQK-------------------QGLDAQRWQALLLHSKFTICPGGHSPETYRMWEALESGSIPIVSRLDYHYPVYSQHANVTCGVGDVSWNT--VAGSPFAEEVSVESWEDLPALLDWLRAMTQEDINKLQEDCMAWYAARM 1237
Y+PL P F V E+ K R N+ +S ST+ R + +E +P +P Q Q + A ++ +LL S FT+ P GH+PET+R++EA E+GSIPIV DY + G W ++ +PF V V+ W D+ +L+ L + I ++Q+D M WY + M
Sbjct: 202 YLPLSPRFEFEMVTDEERKPVTSRKYLFNMMMSLSTNQIRIDLDKKVKELQVQYPGGGTNADSASGGSLPGLGQSFIHNAMTWQTNLPKEVIDGQAMPADEYRQVLLDSVFTLSPSGHNPETFRLFEAAEAGSIPIV---DY---------STRSGNCKNPWRPFKMSQAPF---VWVDDWTDIQHILEDLISDPARVI-QMQKDLMEWYHSFM 399 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.640.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.640.1 >prot_C-linearis_contig10.640.1 ID=prot_C-linearis_contig10.640.1|Name=mRNA_C-linearis_contig10.640.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=421bp MEVTMRTVFKRIARCLVVLSSIWQAGRCHEHSLDAHYRRPFSIEGWVDRTback to top mRNA from alignment at C-linearis_contig10:3158584..3163879+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.640.1 ID=mRNA_C-linearis_contig10.640.1|Name=mRNA_C-linearis_contig10.640.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5296bp|location=Sequence derived from alignment at C-linearis_contig10:3158584..3163879+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:3158584..3163879+ >mRNA_C-linearis_contig10.640.1 ID=mRNA_C-linearis_contig10.640.1|Name=mRNA_C-linearis_contig10.640.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2526bp|location=Sequence derived from alignment at C-linearis_contig10:3158584..3163879+ (Chordaria linearis ClinC8C monoicous)back to top |