mRNA_C-linearis_contig10.634.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.634.1
Unique NamemRNA_C-linearis_contig10.634.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.634.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:3105828..3107840 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size1383
Cds size774
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.634.1prot_C-linearis_contig10.634.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 3106255..3107028 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927326.570598-UTR-C-linearis_contig10:3105827..31062541622927326.570598-UTR-C-linearis_contig10:3105827..3106254Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 3105828..3106254 -
1690879627.920467-UTR-C-linearis_contig10:3105827..31062541690879627.920467-UTR-C-linearis_contig10:3105827..3106254Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 3105828..3106254 -
1622927326.6183417-UTR-C-linearis_contig10:3107028..31071071622927326.6183417-UTR-C-linearis_contig10:3107028..3107107Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 3107029..3107107 -
1690879627.936803-UTR-C-linearis_contig10:3107028..31071071690879627.936803-UTR-C-linearis_contig10:3107028..3107107Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 3107029..3107107 -
1622927326.6307614-UTR-C-linearis_contig10:3107737..31078401622927326.6307614-UTR-C-linearis_contig10:3107737..3107840Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 3107738..3107840 -
1690879627.9443078-UTR-C-linearis_contig10:3107737..31078401690879627.9443078-UTR-C-linearis_contig10:3107737..3107840Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 3107738..3107840 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927326.5793726-CDS-C-linearis_contig10:3106254..31070281622927326.5793726-CDS-C-linearis_contig10:3106254..3107028Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3106255..3107028 -
1690879627.9289587-CDS-C-linearis_contig10:3106254..31070281690879627.9289587-CDS-C-linearis_contig10:3106254..3107028Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3106255..3107028 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.634.1

>prot_C-linearis_contig10.634.1 ID=prot_C-linearis_contig10.634.1|Name=mRNA_C-linearis_contig10.634.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=258bp
MGAICPKKGKRCTEERSTETKRNETKRQETPRPQPLPAPMGCRTAVRSNV
HTVETLRIRVYLLHPAAILFFCVKPGGGLLAWVYLGCFLVLESGSVSAFI
PLFGLVFTVKLRPLEQRETIPIAQSTAGGAGRPRATQESQTGTAVRFPID
SLVALSVPREDKKNTVRVRSAANRTHGIVYQHLFFERGNTTVYPLGRSEC
WGRRTKGGEGNSWSGRAHGLGKKLNRGGKTAYFGKRVYVQGSCRMAMARE
RLVLGFR*
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mRNA from alignment at C-linearis_contig10:3105828..3107840-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.634.1 ID=mRNA_C-linearis_contig10.634.1|Name=mRNA_C-linearis_contig10.634.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2013bp|location=Sequence derived from alignment at C-linearis_contig10:3105828..3107840- (Chordaria linearis ClinC8C monoicous)
TGCGCTGGAGCCCGTGCTGGTATCCAGAGGAGAAGGAGGGGGGCTAGGAG
GGAGTGGCGGGGGTGGGCCACTGGAAGCAGCCAAGGCCGGGCTGGCCGGC
CGTGTGAGTGCGTTTGCTGCGGTGGCGTGGAGCGGGGGCTCCGTGGTACA
CGTTGTGTGGGATGGGATGGGGTGCGGCGGGGGTTTTGAGGTCGTGGTCG
TTTTTATTTTTTTCGTGCATCAGAAAGTGACTCAGATTGTATGTGTTTCA
TTGCTAAGGTGGCTTTGCCCCTTTCGTTTTCATGATCCTCGTGTGTTCGA
TACGAAAGGTTGTTTAGTTTACAAGTACGTGTTCTATTTAGCTCTCTTCT
TGTATTCCCTTTGTGATCACTCTGTGCGGTGTCTTTTTGATATCACCCTT
CCTCTGCCTTTTTTTTCCCCATATAACTGCACTTCCGGTCGTTGAGGTTA
TTTTCCAGTTTGGGTATTTATGTAGTATGCTTCTTGTTTCTCTTCGTCGT
GCGCTTGGCTACGTCACTCTTTGGCACAGTTTTGCCACTGATCTTGCTGT
ATTGTTCATGCCTCCTTGTGCCGTTTCCCCTCTGACGACTTCTTCGTTAT
TCACTCCCACCCTCTCTCTTGATCGATCACGCGTCTGCGTTCGCGTTGCC
CCCCTTCCCTCCTGATTTAGCCTTTCTCATTAATCTCTCCCCCCCTCTTT
TTTGTGGCGCCTTCTGTCCCCTCAAACCCCCAGGCGGCCGACGCACGCCG
AGTATTGACCGGAAGGCCGCGGAGGGACACCCTAAACCCAGGCGGCGGGG
CCCGCGACGAGGATGGGAGCGATTTGTCCGAAGAAAGGGAAGCGCTGTAC
CGAGGAACGGTCCACTGAAACGAAACGAAACGAAACGAAACGACAGGAAA
CACCCAGGCCTCAACCACTGCCGGCACCGATGGGCTGTCGTACTGCTGTC
CGTAGCAACGTTCACACGGTGGAAACTCTACGCATACGTGTATACCTTCT
CCACCCTGCGGCGATTTTGTTTTTTTGTGTGAAGCCGGGGGGGGGGCTGT
TGGCCTGGGTATACCTCGGTTGTTTCTTGGTGCTCGAAAGTGGTTCAGTT
TCAGCTTTCATTCCTCTCTTTGGTTTGGTTTTTACAGTGAAGTTGCGCCC
TTTAGAACAGAGGGAGACAATCCCAATTGCCCAGAGCACTGCGGGCGGGG
CGGGGCGGCCGCGAGCAACGCAAGAGAGTCAGACTGGGACGGCAGTGAGG
TTCCCGATCGACAGCCTTGTTGCTTTGTCGGTACCGAGAGAAGATAAAAA
GAATACTGTCCGCGTGCGAAGCGCGGCTAACAGGACGCACGGGATAGTAT
ACCAACATTTGTTTTTCGAGCGAGGAAATACTACTGTCTACCCGCTCGGG
CGCAGTGAATGTTGGGGTAGAAGGACAAAGGGGGGTGAGGGAAACTCGTG
GTCGGGTAGAGCGCACGGTTTAGGGAAGAAATTGAATCGGGGCGGCAAAA
CTGCTTATTTTGGTAAAAGGGTGTATGTGCAGGGGTCGTGTAGAATGGCC
ATGGCTAGGGAAAGGCTCGTACTTGGCTTTCGATGAAACCGGTTTCACCC
AGGAAATAACATTGTTGAGTTTTGTCAATCACTCGACACTCCCAACCAGA
CGAATTTTGGCTCCTAGGGTTGGGGGAGTTTTTCCGAATTACGCTCGTCC
TCCCTGGATGAGCTGCGTACATGTGGCCGTTGTGGCTAAACGGCTTTTCG
TGGCATGCCTTTTCCATGAAGAGGTTCCCGTTACCTTTACCGCCCCTTTC
GGGGAAGGACATACAATAGGTGCATAAAAACAGTTGGAGGAGGGTGAAAT
ATCTCCGACGAGGAGTTGAATGCAGTTGGCGCTTGCAGCTATTTCGTACA
TAGACTATACAAGTACATGCGGCACGCTCGGTGATGGTAGATAGAGTACG
TACTGTACATGGAATGACAGCGAACGGGAAAAACTAATGTTTGATTTGTG
CTTGATGTGCCGC
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Coding sequence (CDS) from alignment at C-linearis_contig10:3105828..3107840-

>mRNA_C-linearis_contig10.634.1 ID=mRNA_C-linearis_contig10.634.1|Name=mRNA_C-linearis_contig10.634.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1548bp|location=Sequence derived from alignment at C-linearis_contig10:3105828..3107840- (Chordaria linearis ClinC8C monoicous)
ATGGGAGCGATTTGTCCGAAGAAAGGGAAGCGCTGTACCGAGGAACGGTC
CACTGAAACGAAACGAAACGAAACGAAACGACAGGAAACACCCAGGCCTC
AACCACTGCCGGCACCGATGGGCTGTCGTACTGCTGTCCGTAGCAACGTT
CACACGGTGGAAACTCTACGCATACGTGTATACCTTCTCCACCCTGCGGC
GATTTTGTTTTTTTGTGTGAAGCCGGGGGGGGGGCTGTTGGCCTGGGTAT
ACCTCGGTTGTTTCTTGGTGCTCGAAAGTGGTTCAGTTTCAGCTTTCATT
CCTCTCTTTGGTTTGGTTTTTACAGTGAAGTTGCGCCCTTTAGAACAGAG
GGAGACAATCCCAATTGCCCAGAGCACTGCGGGCGGGGCGGGGCGGCCGC
GAGCAACGCAAGAGAGTCAGACTGGGACGGCAGTGAGGTTCCCGATCGAC
AGCCTTGTTGCTTTGTCGGTACCGAGAGAAGATAAAAAGAATACTGTCCG
CGTGCGAAGCGCGGCTAACAGGACGCACGGGATAGTATACCAACATTTGT
TTTTCGAGCGAGGAAATACTACTGTCTACCCGCTCGGGCGCAGTGAATGT
TGGGGTAGAAGGACAAAGGGGGGTGAGGGAAACTCGTGGTCGGGTAGAGC
GCACGGTTTAGGGAAGAAATTGAATCGGGGCGGCAAAACTGCTTATTTTG
GTAAAAGGGTGTATGTGCAGGGGTCGTGTAGAATGGCCATGGCTAGGGAA
AGGCTCGTACTTGGCTTTCGATGAATGGGAGCGATTTGTCCGAAGAAAGG
GAAGCGCTGTACCGAGGAACGGTCCACTGAAACGAAACGAAACGAAACGA
AACGACAGGAAACACCCAGGCCTCAACCACTGCCGGCACCGATGGGCTGT
CGTACTGCTGTCCGTAGCAACGTTCACACGGTGGAAACTCTACGCATACG
TGTATACCTTCTCCACCCTGCGGCGATTTTGTTTTTTTGTGTGAAGCCGG
GGGGGGGGCTGTTGGCCTGGGTATACCTCGGTTGTTTCTTGGTGCTCGAA
AGTGGTTCAGTTTCAGCTTTCATTCCTCTCTTTGGTTTGGTTTTTACAGT
GAAGTTGCGCCCTTTAGAACAGAGGGAGACAATCCCAATTGCCCAGAGCA
CTGCGGGCGGGGCGGGGCGGCCGCGAGCAACGCAAGAGAGTCAGACTGGG
ACGGCAGTGAGGTTCCCGATCGACAGCCTTGTTGCTTTGTCGGTACCGAG
AGAAGATAAAAAGAATACTGTCCGCGTGCGAAGCGCGGCTAACAGGACGC
ACGGGATAGTATACCAACATTTGTTTTTCGAGCGAGGAAATACTACTGTC
TACCCGCTCGGGCGCAGTGAATGTTGGGGTAGAAGGACAAAGGGGGGTGA
GGGAAACTCGTGGTCGGGTAGAGCGCACGGTTTAGGGAAGAAATTGAATC
GGGGCGGCAAAACTGCTTATTTTGGTAAAAGGGTGTATGTGCAGGGGTCG
TGTAGAATGGCCATGGCTAGGGAAAGGCTCGTACTTGGCTTTCGATGA
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