mRNA_C-linearis_contig10.633.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.633.1
Unique NamemRNA_C-linearis_contig10.633.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig10.633.1 vs. uniprot
Match: A0A6H5L089_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L089_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 4.670e-27
Identity = 70/177 (39.55%), Postives = 105/177 (59.32%), Query Frame = 1 
Query:  163 TRPLPKMPRNPQQQVRWLRRLRLCLADEGLDHTLEEVEASGSVCVIRSTHSVLLSQ-HPEGVVQEHTRAYRLLVESVSGYLVEESMWSCATVAEAWQVLNAWVLPSTVAQKRLLKQQFENVPFPPGSPPNSYFASFDRIGNILRDVGVVVAEREKLEAMISQLPREYGIQ-KAILSD 687
            TR  PK P  P + + W RR+R  LA EGL+ TL+    +G V +I       L++ H   +V  H RA+  LVES SG  +EE++++C+ V EAW  +  W LP+T A++RLL++Q E V   PG  P  +FA  D I N +R VG+  +ER+ ++ ++ QL  +Y ++ K  LSD
Sbjct:  379 TRNPPKHPNEPGKFMSWSRRMRTFLAVEGLEQTLDHQPPTGYVHIIGCPDRNYLNRIHGAPLVTAHLRAWGYLVESTSGSDIEETLFACSCVPEAWTAIREWSLPTTDAEQRLLERQLETVEMSPGENPKLFFARVDGIVNTMRAVGIEKSERQIVQTIVRQLSSDYDVERKTTLSD 555
[Close]
BLAST of mRNA_C-linearis_contig10.633.1 vs. uniprot
Match: A0A6H5KWA2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWA2_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 7.140e-16
Identity = 60/224 (26.79%), Postives = 108/224 (48.21%), Query Frame = 1 
Query:  103 GVGKNGDPSFIRRPVRANSYTRPLPKMPRNPQQQ--VRWLRRLRLCLADEGLDHTLEEVEASGSVCVIR-STHSVLLSQHPEGVVQEHTRAYRLLVESVSGYLVEESMWSCATVAEAWQVLNAWVLPSTVAQKRLLKQQFENVPFPPGSPPNSYFASFDRIGNILRDVGVVVAEREKLEAMISQLPREYGIQKAILSDKPDVTRREVEEKIRTAYADTRVMQMR 765
            G+  +G       P+     + P+P++  N   +  + W R     + +  L HT   +  S  V V+       L  Q+   +V EH R +  ++E+  G  +E  M+SC +VAEAW+++  W LPS  A  +LL  + + V       P  + +   ++   LR V +  +E+E ++ ++ QLP  Y ++K     K D+TR E+++ +R  YA  +  +MR
Sbjct:   77 GMSYDGGTGVPDLPLGGTIASTPVPRISSNCTAEAFLSWRRCFLAYVDNHNLQHT---ISGSAEVPVVSCQDEGYLTRQYGAQLVVEHKRTWSFILEAAVGGPLENKMYSCHSVAEAWRMMADWFLPSHPADCQLLVAELDTVTMNNDENPKLFCSRVAQLETKLRAVVIAKSEQEVVQILVRQLPARYDVEKRTSLPKRDLTRAELQDVVRGRYATLKASEMR 297
[Close]
BLAST of mRNA_C-linearis_contig10.633.1 vs. uniprot
Match: A0A6H5L0S5_9PHAE (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0S5_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 4.670e-9
Identity = 39/99 (39.39%), Postives = 57/99 (57.58%), Query Frame = 1 
Query:  163 TRPLPKMPRNPQQQVRWLRRLRLCLADEGLDHTLEEVEASGSVCVIRSTHSVLLSQ-HPEGVVQEHTRAYRLLVESVSGYLVEESMWSCATVAEAWQVL 456
            TR  PK P  P + + W RR+R  LA EGL+ TL+    +G V +I       L++ H   +V  H RA+  LVES SG  +EE++++C+ V EAW  +
Sbjct:   93 TRNPPKHPNEPGKFMSWSRRMRTFLAVEGLEQTLDHQPPTGYVHIIGCPDRNYLNRIHGAPLVTAHLRAWGYLVESTSGSDIEETLFACSCVPEAWTAI 191
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.633.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L089_9PHAE4.670e-2739.55Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KWA2_9PHAE7.140e-1626.79Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L0S5_9PHAE4.670e-939.39Uncharacterized protein (Fragment) n=2 Tax=Ectocar... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:3066002..3066929 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size928
Cds size927
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927326.5339806-CDS-C-linearis_contig10:3066001..30669281622927326.5339806-CDS-C-linearis_contig10:3066001..3066928Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3066002..3066928 +
1690879627.9024706-CDS-C-linearis_contig10:3066001..30669281690879627.9024706-CDS-C-linearis_contig10:3066001..3066928Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3066002..3066928 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.633.1prot_C-linearis_contig10.633.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 3066002..3066928 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.633.1

>prot_C-linearis_contig10.633.1 ID=prot_C-linearis_contig10.633.1|Name=mRNA_C-linearis_contig10.633.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=309bp
AGSFSTTCAASTAAGGAAFSVKTAGGAASTGLYEGVGKNGDPSFIRRPVR
ANSYTRPLPKMPRNPQQQVRWLRRLRLCLADEGLDHTLEEVEASGSVCVI
RSTHSVLLSQHPEGVVQEHTRAYRLLVESVSGYLVEESMWSCATVAEAWQ
VLNAWVLPSTVAQKRLLKQQFENVPFPPGSPPNSYFASFDRIGNILRDVG
VVVAEREKLEAMISQLPREYGIQKAILSDKPDVTRREVEEKIRTAYADTR
VMQMRHWRVAPHGPHALFASGFQSERSNDGYNGGGGSWSRSFGRRWRQRQ
RGFGRRRRR
back to top

mRNA from alignment at C-linearis_contig10:3066002..3066929+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.633.1 ID=mRNA_C-linearis_contig10.633.1|Name=mRNA_C-linearis_contig10.633.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=928bp|location=Sequence derived from alignment at C-linearis_contig10:3066002..3066929+ (Chordaria linearis ClinC8C monoicous)
GCCGGTTCATTCTCTACTACCTGTGCGGCATCCACTGCTGCTGGTGGGGC
AGCTTTTTCGGTGAAGACTGCTGGAGGGGCAGCTTCTACGGGACTGTATG
AAGGTGTGGGGAAAAACGGAGATCCTTCTTTTATCCGCCGACCTGTCAGA
GCGAATTCGTACACGCGCCCACTACCTAAAATGCCCCGCAACCCACAACA
ACAAGTGCGTTGGCTAAGAAGACTGCGCCTGTGTCTAGCTGACGAGGGGT
TGGACCACACACTTGAGGAGGTCGAAGCGAGTGGATCTGTGTGTGTGATC
AGATCAACACATTCTGTCCTGCTTTCTCAACATCCTGAGGGAGTCGTTCA
GGAGCACACAAGGGCATATCGTTTGCTGGTGGAGTCGGTCTCTGGATACC
TTGTGGAAGAGAGCATGTGGTCGTGTGCGACTGTGGCGGAGGCATGGCAG
GTGTTGAACGCATGGGTGCTGCCTTCCACCGTCGCCCAGAAGCGTCTCCT
TAAGCAACAGTTCGAAAACGTGCCGTTCCCGCCGGGCAGTCCTCCCAACT
CGTACTTCGCGTCATTCGACAGAATCGGCAACATTTTGAGAGATGTCGGT
GTCGTAGTGGCAGAGAGGGAGAAGCTGGAGGCCATGATCAGCCAGCTGCC
CAGAGAGTATGGCATTCAGAAAGCTATCCTGAGCGACAAACCTGACGTGA
CGAGGCGTGAGGTTGAGGAGAAGATTCGCACTGCCTACGCGGATACGCGT
GTGATGCAGATGCGGCATTGGCGTGTCGCACCGCACGGCCCGCATGCACT
CTTTGCCAGTGGTTTTCAATCGGAACGCAGCAACGACGGCTACAACGGTG
GAGGCGGCAGCTGGAGCCGAAGCTTCGGTCGGCGGTGGCGGCAACGACAG
AGAGGTTTTGGTCGGCGTCGGCGGCGGC
back to top

Coding sequence (CDS) from alignment at C-linearis_contig10:3066002..3066929+

>mRNA_C-linearis_contig10.633.1 ID=mRNA_C-linearis_contig10.633.1|Name=mRNA_C-linearis_contig10.633.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1854bp|location=Sequence derived from alignment at C-linearis_contig10:3066002..3066929+ (Chordaria linearis ClinC8C monoicous)
GCCGGTTCATTCTCTACTACCTGTGCGGCATCCACTGCTGCTGGTGGGGC
AGCTTTTTCGGTGAAGACTGCTGGAGGGGCAGCTTCTACGGGACTGTATG
AAGGTGTGGGGAAAAACGGAGATCCTTCTTTTATCCGCCGACCTGTCAGA
GCGAATTCGTACACGCGCCCACTACCTAAAATGCCCCGCAACCCACAACA
ACAAGTGCGTTGGCTAAGAAGACTGCGCCTGTGTCTAGCTGACGAGGGGT
TGGACCACACACTTGAGGAGGTCGAAGCGAGTGGATCTGTGTGTGTGATC
AGATCAACACATTCTGTCCTGCTTTCTCAACATCCTGAGGGAGTCGTTCA
GGAGCACACAAGGGCATATCGTTTGCTGGTGGAGTCGGTCTCTGGATACC
TTGTGGAAGAGAGCATGTGGTCGTGTGCGACTGTGGCGGAGGCATGGCAG
GTGTTGAACGCATGGGTGCTGCCTTCCACCGTCGCCCAGAAGCGTCTCCT
TAAGCAACAGTTCGAAAACGTGCCGTTCCCGCCGGGCAGTCCTCCCAACT
CGTACTTCGCGTCATTCGACAGAATCGGCAACATTTTGAGAGATGTCGGT
GTCGTAGTGGCAGAGAGGGAGAAGCTGGAGGCCATGATCAGCCAGCTGCC
CAGAGAGTATGGCATTCAGAAAGCTATCCTGAGCGACAAACCTGACGTGA
CGAGGCGTGAGGTTGAGGAGAAGATTCGCACTGCCTACGCGGATACGCGT
GTGATGCAGATGCGGCATTGGCGTGTCGCACCGCACGGCCCGCATGCACT
CTTTGCCAGTGGTTTTCAATCGGAACGCAGCAACGACGGCTACAACGGTG
GAGGCGGCAGCTGGAGCCGAAGCTTCGGTCGGCGGTGGCGGCAACGACAG
AGAGGTTTTGGTCGGCGTCGGCGGCGGGCCGGTTCATTCTCTACTACCTG
TGCGGCATCCACTGCTGCTGGTGGGGCAGCTTTTTCGGTGAAGACTGCTG
GAGGGGCAGCTTCTACGGGACTGTATGAAGGTGTGGGGAAAAACGGAGAT
CCTTCTTTTATCCGCCGACCTGTCAGAGCGAATTCGTACACGCGCCCACT
ACCTAAAATGCCCCGCAACCCACAACAACAAGTGCGTTGGCTAAGAAGAC
TGCGCCTGTGTCTAGCTGACGAGGGGTTGGACCACACACTTGAGGAGGTC
GAAGCGAGTGGATCTGTGTGTGTGATCAGATCAACACATTCTGTCCTGCT
TTCTCAACATCCTGAGGGAGTCGTTCAGGAGCACACAAGGGCATATCGTT
TGCTGGTGGAGTCGGTCTCTGGATACCTTGTGGAAGAGAGCATGTGGTCG
TGTGCGACTGTGGCGGAGGCATGGCAGGTGTTGAACGCATGGGTGCTGCC
TTCCACCGTCGCCCAGAAGCGTCTCCTTAAGCAACAGTTCGAAAACGTGC
CGTTCCCGCCGGGCAGTCCTCCCAACTCGTACTTCGCGTCATTCGACAGA
ATCGGCAACATTTTGAGAGATGTCGGTGTCGTAGTGGCAGAGAGGGAGAA
GCTGGAGGCCATGATCAGCCAGCTGCCCAGAGAGTATGGCATTCAGAAAG
CTATCCTGAGCGACAAACCTGACGTGACGAGGCGTGAGGTTGAGGAGAAG
ATTCGCACTGCCTACGCGGATACGCGTGTGATGCAGATGCGGCATTGGCG
TGTCGCACCGCACGGCCCGCATGCACTCTTTGCCAGTGGTTTTCAATCGG
AACGCAGCAACGACGGCTACAACGGTGGAGGCGGCAGCTGGAGCCGAAGC
TTCGGTCGGCGGTGGCGGCAACGACAGAGAGGTTTTGGTCGGCGTCGGCG
GCGG
back to top