mRNA_C-linearis_contig10.631.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.631.1
Unique NamemRNA_C-linearis_contig10.631.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig10.631.1 vs. uniprot
Match: A0A6H5KK88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK88_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 5.840e-40
Identity = 76/99 (76.77%), Postives = 86/99 (86.87%), Query Frame = -1 
Query:    1 RCLSNARYMQRNANIARRGYVRASAVDRTAGRRKPTTNAFKLKLQPDAVVTGDSSSGWQKAVYSVSTTTRGERVTVVTNFTPHQPGSYKIVCCSSQCNS 297
            +C+ NARY   +A  A+ G+VRASAVDRTAGRRKPTT+ FKLK  PD ++TGDSSSGWQKAVYSVSTTTRGERVTVVTNF P++PGSYKIVCCSSQC S
Sbjct:  227 KCVGNARYRTNSATRAQGGHVRASAVDRTAGRRKPTTSVFKLK--PDPLLTGDSSSGWQKAVYSVSTTTRGERVTVVTNFIPNEPGSYKIVCCSSQCIS 323
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BLAST of mRNA_C-linearis_contig10.631.1 vs. uniprot
Match: A0A6H5JJM9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJM9_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 5.970e-40
Identity = 76/99 (76.77%), Postives = 86/99 (86.87%), Query Frame = -1 
Query:    1 RCLSNARYMQRNANIARRGYVRASAVDRTAGRRKPTTNAFKLKLQPDAVVTGDSSSGWQKAVYSVSTTTRGERVTVVTNFTPHQPGSYKIVCCSSQCNS 297
            +C+ NARY   +A  A+ G+VRASAVDRTAGRRKPTT+ FKLK  PD ++TGDSSSGWQKAVYSVSTTTRGERVTVVTNF P++PGSYKIVCCSSQC S
Sbjct:  185 KCVGNARYRTNSATRAQGGHVRASAVDRTAGRRKPTTSVFKLK--PDPLLTGDSSSGWQKAVYSVSTTTRGERVTVVTNFIPNEPGSYKIVCCSSQCIS 281
[Close]
BLAST of mRNA_C-linearis_contig10.631.1 vs. uniprot
Match: A0A6H5JSZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSZ5_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 1.960e-39
Identity = 75/99 (75.76%), Postives = 85/99 (85.86%), Query Frame = -1 
Query:    1 RCLSNARYMQRNANIARRGYVRASAVDRTAGRRKPTTNAFKLKLQPDAVVTGDSSSGWQKAVYSVSTTTRGERVTVVTNFTPHQPGSYKIVCCSSQCNS 297
            +C+ NARY   +A  A+ G+VRASAVDRTAGRRKPTT+ FKLK  PD ++ GDSSSGWQKAVYSVSTTTRGERVTVVTNF P++PGSYKIVCCSSQC S
Sbjct:   25 KCVGNARYRTNSATRAQGGHVRASAVDRTAGRRKPTTSVFKLK--PDPLLAGDSSSGWQKAVYSVSTTTRGERVTVVTNFIPNEPGSYKIVCCSSQCIS 121
[Close]
BLAST of mRNA_C-linearis_contig10.631.1 vs. uniprot
Match: A0A6H5KMJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMJ9_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 7.080e-31
Identity = 64/103 (62.14%), Postives = 78/103 (75.73%), Query Frame = -1 
Query:    1 CRCLSNARYMQRNANIARR---GYVRASAVDRTAGRRKPTTNAFKLKLQPDAVVTGDSSSGWQKAVYSVSTTTRGERVTVVTNFTPHQPGSYKIVCCSSQCNS 300
            C+C  ++  ++  AN ARR   G VR SAV+RTA RRKP T+AFKL +Q D +V GDSSSG  KAVYSVSTT RG+R TV+TNF P QPGSYKIVCC+++C S
Sbjct:  390 CKCKRHSENLRVRANSARRAQDGIVRRSAVERTATRRKPATSAFKLPVQLDPLVAGDSSSGGLKAVYSVSTTARGDRYTVITNFDPQQPGSYKIVCCNNECTS 492
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.631.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KK88_9PHAE5.840e-4076.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJM9_9PHAE5.970e-4076.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSZ5_9PHAE1.960e-3975.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMJ9_9PHAE7.080e-3162.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:3039804..3040109 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size308
Cds size306
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927326.5028791-CDS-C-linearis_contig10:3039803..30401091622927326.5028791-CDS-C-linearis_contig10:3039803..3040109Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3039804..3040109 +
1690879627.8903456-CDS-C-linearis_contig10:3039803..30401091690879627.8903456-CDS-C-linearis_contig10:3039803..3040109Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3039804..3040109 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.631.1prot_C-linearis_contig10.631.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 3039804..3040109 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.631.1

>prot_C-linearis_contig10.631.1 ID=prot_C-linearis_contig10.631.1|Name=mRNA_C-linearis_contig10.631.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=102bp
GVALAAAADNLVAARLVGGEVRDDGDALTPSGRGNRVHRLLPPARAISCD
HGVGLQLELEGVGRWLPSPRRSVNGTRSYIAASCDICISLHVPGVAQAPA
L*
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mRNA from alignment at C-linearis_contig10:3039804..3040109+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.631.1 ID=mRNA_C-linearis_contig10.631.1|Name=mRNA_C-linearis_contig10.631.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=306bp|location=Sequence derived from alignment at C-linearis_contig10:3039804..3040109+ (Chordaria linearis ClinC8C monoicous)
GGAGTTGCATTGGCTGCTGCAGCAGACAATCTTGTAGCTGCCAGGCTGGT
GGGGGGTGAAGTTCGTGACGACGGTGACGCGCTCACCCCGAGTGGTCGTG
GAAACAGAGTACACCGCCTTTTGCCACCCGCTCGAGCTATCTCCTGTGAC
CACGGCGTCGGGCTGCAACTTGAGCTTGAAGGCGTTGGTCGTTGGCTTCC
GTCGCCCCGCCGTTCGGTCAACGGCACTCGCTCGTACATAGCCGCGTCGT
GCGATATTTGCATTTCTTTGCATGTACCTGGCGTTGCTCAAGCACCTGCA
TTGTAA
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Coding sequence (CDS) from alignment at C-linearis_contig10:3039804..3040109+

>mRNA_C-linearis_contig10.631.1 ID=mRNA_C-linearis_contig10.631.1|Name=mRNA_C-linearis_contig10.631.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at C-linearis_contig10:3039804..3040109+ (Chordaria linearis ClinC8C monoicous)
GGAGTTGCATTGGCTGCTGCAGCAGACAATCTTGTAGCTGCCAGGCTGGT
GGGGGGTGAAGTTCGTGACGACGGTGACGCGCTCACCCCGAGTGGTCGTG
GAAACAGAGTACACCGCCTTTTGCCACCCGCTCGAGCTATCTCCTGTGAC
CACGGCGTCGGGCTGCAACTTGAGCTTGAAGGCGTTGGTCGTTGGCTTCC
GTCGCCCCGCCGTTCGGTCAACGGCACTCGCTCGTACATAGCCGCGTCGT
GCGATATTTGCATTTCTTTGCATGTACCTGGCGTTGCTCAAGCACCTGCA
TTGTAAGGAGTTGCATTGGCTGCTGCAGCAGACAATCTTGTAGCTGCCAG
GCTGGTGGGGGGTGAAGTTCGTGACGACGGTGACGCGCTCACCCCGAGTG
GTCGTGGAAACAGAGTACACCGCCTTTTGCCACCCGCTCGAGCTATCTCC
TGTGACCACGGCGTCGGGCTGCAACTTGAGCTTGAAGGCGTTGGTCGTTG
GCTTCCGTCGCCCCGCCGTTCGGTCAACGGCACTCGCTCGTACATAGCCG
CGTCGTGCGATATTTGCATTTCTTTGCATGTACCTGGCGTTGCTCAAGCA
CCTGCATTGTAA
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