mRNA_C-linearis_contig10.627.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.627.1
Unique NamemRNA_C-linearis_contig10.627.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig10.627.1 vs. uniprot
Match: D7G8S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8S9_ECTSI)

HSP 1 Score: 182 bits (462), Expect = 3.320e-57
Identity = 88/104 (84.62%), Postives = 95/104 (91.35%), Query Frame = 1 
Query:    1 MDNPSLTQSQREALRVEGFGPTALHFVKNQGGWMFNFIFAHLLFWLFGFTALLDYGYSDLNQSASGQIKSGPSGSGVGIITTLLMCVATLVVVIKAIRYDPNAD 312
            MDN SLTQSQREAL V+GFGPT +HFVKN GGWMFN +FAHLLFWLFGFTALL++GYSDLNQ +SGQIKSGPSGSGVGIITTLLM V TLVVV KAIRYDPNA+
Sbjct:    1 MDNASLTQSQREALIVKGFGPTMVHFVKNNGGWMFNLVFAHLLFWLFGFTALLEFGYSDLNQDSSGQIKSGPSGSGVGIITTLLMAVGTLVVVAKAIRYDPNAE 104
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BLAST of mRNA_C-linearis_contig10.627.1 vs. uniprot
Match: A0A7S2KAR8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KAR8_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 9.000e-16
Identity = 38/75 (50.67%), Postives = 52/75 (69.33%), Query Frame = 1 
Query:   76 FVKNQGGWMFNFIFAHLLFWLFGFTALLDYGYSDLNQSASGQIKSGPSGSGVGIITTLLMCVATLVVVIKAIRYD 300
            F+K+Q GW  NF  AH+LFWL+GF  L +YGYS+   S  G I SGP GSG GI+T L++CV +LV + K + ++
Sbjct:   10 FLKSQPGWALNFTLAHVLFWLYGFPDLSEYGYSN-TFSEQGNIPSGPLGSGGGIVTLLIVCVMSLVWLQKLVSHE 83
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BLAST of mRNA_C-linearis_contig10.627.1 vs. uniprot
Match: A0A1V9ZXZ5_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZXZ5_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 2.210e-12
Identity = 34/83 (40.96%), Postives = 48/83 (57.83%), Query Frame = 1 
Query:   76 FVKNQGGWMFNFIFAHLLFWLFGFTALLDYGYSDLNQSASGQIKSGPSGSGVGIITTLLMCVATLVVVIKAIRY----DPNAD 312
            ++ N  GW FN + ++LLFWL GF  +  YGYS  N    G I SG  GSGV I+T +LMC+  ++   + I Y    +P+ D
Sbjct:   11 YISNNVGWAFNLLCSNLLFWLAGFPTVQKYGYSSTNYDEYGGIPSGGEGSGVFIVTLVLMCLCYIIYFSRMIAYLQSDEPHHD 93
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BLAST of mRNA_C-linearis_contig10.627.1 vs. uniprot
Match: A0A485KR65_9STRA (Aste57867_10737 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KR65_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 2.260e-12
Identity = 35/78 (44.87%), Postives = 46/78 (58.97%), Query Frame = 1 
Query:   40 LRVEGFGPTALHFVKNQGGWMFNFIFAHLLFWLFGFTALLDYGYSDLNQSASGQIKSGPSGSGVGIITTLLMCVATLV 273
            +   G   T L ++ +  GW FN I +++LFWL GF  + DYGYS  N   +G I SG  GSGV +IT +LM V  LV
Sbjct:    1 MTAHGPPRTVLGYILDNQGWGFNLIISNILFWLTGFPTVRDYGYSSTNYDENGGIPSGGEGSGVFVITLVLMIVCYLV 78
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BLAST of mRNA_C-linearis_contig10.627.1 vs. uniprot
Match: A0A6G0XHM4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XHM4_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.750e-11
Identity = 31/83 (37.35%), Postives = 50/83 (60.24%), Query Frame = 1 
Query:   64 TALHFVKNQGGWMFNFIFAHLLFWLFGFTALLDYGYSDLNQSASGQIKSGPSGSGVGIITTLLMCVATLVVVIKAIRYDPNAD 312
            T + ++++  GW FN + +++LFWL GF  + DYGYS  N   +G I SG  GSGV +IT +LM +  +V   + + +  + D
Sbjct:    7 TVVGYIQDNVGWGFNLVVSNILFWLTGFPTVRDYGYSSENYDENGGIPSGGEGSGVFVITLVLMVICYIVYFGRMVTFLTSKD 89
[Close]
BLAST of mRNA_C-linearis_contig10.627.1 vs. uniprot
Match: A0A397AWI6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AWI6_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 2.030e-11
Identity = 31/70 (44.29%), Postives = 46/70 (65.71%), Query Frame = 1 
Query:   64 TALHFVKNQGGWMFNFIFAHLLFWLFGFTALLDYGYSDLNQSASGQIKSGPSGSGVGIITTLLMCVATLV 273
            T L ++++  GW FN + +++LFWL GF    DYGYS+++ +  G I SG  GSGV +IT +LM +  LV
Sbjct:   13 TVLAYIQDNTGWGFNLVVSNILFWLTGFPIYRDYGYSNVHYNEKGGIASGGEGSGVFVITLVLMLICYLV 82
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BLAST of mRNA_C-linearis_contig10.627.1 vs. uniprot
Match: A0A1V9YG19_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YG19_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 3.490e-11
Identity = 32/60 (53.33%), Postives = 40/60 (66.67%), Query Frame = 1 
Query:   76 FVKNQGGWMFNFIFAHLLFWLFGFTALLDYGYSDLNQSASGQIKSGPSGSGVGIITTLLM 255
            ++ N  GW FNFI +++LFWL GF A+  YGYS  N  A G I SG  GSGV I+T +LM
Sbjct:   11 YLSNNVGWAFNFICSNILFWLAGFPAVQKYGYSSENYDAYGGIPSGGEGSGVFIVTLVLM 70
[Close]
BLAST of mRNA_C-linearis_contig10.627.1 vs. uniprot
Match: A0A024T7R1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024T7R1_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 3.950e-11
Identity = 32/70 (45.71%), Postives = 45/70 (64.29%), Query Frame = 1 
Query:   64 TALHFVKNQGGWMFNFIFAHLLFWLFGFTALLDYGYSDLNQSASGQIKSGPSGSGVGIITTLLMCVATLV 273
            T + FV +  GW FN + +++LFWL GF    DYGYS+++ +  G I SG  GSGV +IT +LM +  LV
Sbjct:   12 TVVAFVLDNTGWGFNLVVSNILFWLTGFPIYRDYGYSNVHYNEKGGIPSGGEGSGVFVITLVLMLICYLV 81
[Close]
BLAST of mRNA_C-linearis_contig10.627.1 vs. uniprot
Match: T0RXX1_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RXX1_SAPDV)

HSP 1 Score: 64.3 bits (155), Expect = 7.130e-11
Identity = 35/92 (38.04%), Postives = 50/92 (54.35%), Query Frame = 1 
Query:   49 EGFGPTALHFVKNQGGWMFNFIFAHLLFWLFGFTALLDYGYSDLNQSASGQIKSGPSGSGVGIITTLLMCVATLVVVIKAIRY----DPNAD 312
            +G   T   ++ +  GW FN I +++LFWL GF  +  YGYS  N    G I SG  GSGV I+T +LMC+  +V   +   Y    +P+ D
Sbjct:    3 KGAKRTVGKYINSNYGWAFNLIASNILFWLAGFPTVQKYGYSSDNYDIYGGIPSGGEGSGVFIVTLVLMCICYIVYFGRMAAYLLSDEPHKD 94
[Close]
BLAST of mRNA_C-linearis_contig10.627.1 vs. uniprot
Match: A0A425CSI0_9STRA (YTH domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425CSI0_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 8.340e-11
Identity = 31/70 (44.29%), Postives = 46/70 (65.71%), Query Frame = 1 
Query:   64 TALHFVKNQGGWMFNFIFAHLLFWLFGFTALLDYGYSDLNQSASGQIKSGPSGSGVGIITTLLMCVATLV 273
            T L ++++  GW FN + +++LFWL GF    DYGYS+++ +  G I SG  GSGV +IT +LM +  LV
Sbjct:   76 TVLAYIQDNTGWGFNLVVSNILFWLTGFPIYRDYGYSNVHYNEKGGIASGGEGSGVFVITLVLMLICYLV 145
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.627.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7G8S9_ECTSI3.320e-5784.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2KAR8_9STRA9.000e-1650.67Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A1V9ZXZ5_9STRA2.210e-1240.96Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A485KR65_9STRA2.260e-1244.87Aste57867_10737 protein n=1 Tax=Aphanomyces stella... [more]
A0A6G0XHM4_9STRA1.750e-1137.35Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A397AWI6_9STRA2.030e-1144.29Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A1V9YG19_9STRA3.490e-1153.33Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A024T7R1_9STRA3.950e-1145.71Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
T0RXX1_SAPDV7.130e-1138.04Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A425CSI0_9STRA8.340e-1144.29YTH domain-containing protein n=2 Tax=Aphanomyces ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:2979415..2980922 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score183.3
Seed ortholog evalue5.8e-44
Seed eggNOG ortholog2880.D7G8S9
Hectar predicted targeting categorysignal anchor
EggNOG OGs2E1SW@1,2S92Y@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-22_002860.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size413
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.627.1prot_C-linearis_contig10.627.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 2979507..2980922 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927348.012354-UTR-C-linearis_contig10:2979414..29795061622927348.012354-UTR-C-linearis_contig10:2979414..2979506Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2979415..2979506 -
1690879643.1793764-UTR-C-linearis_contig10:2979414..29795061690879643.1793764-UTR-C-linearis_contig10:2979414..2979506Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2979415..2979506 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927348.0231628-CDS-C-linearis_contig10:2979506..29795391622927348.0231628-CDS-C-linearis_contig10:2979506..2979539Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2979507..2979539 -
1690879643.190455-CDS-C-linearis_contig10:2979506..29795391690879643.190455-CDS-C-linearis_contig10:2979506..2979539Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2979507..2979539 -
1622927348.0331073-CDS-C-linearis_contig10:2980165..29802861622927348.0331073-CDS-C-linearis_contig10:2980165..2980286Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2980166..2980286 -
1690879643.1992776-CDS-C-linearis_contig10:2980165..29802861690879643.1992776-CDS-C-linearis_contig10:2980165..2980286Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2980166..2980286 -
1622927348.0438333-CDS-C-linearis_contig10:2980755..29809221622927348.0438333-CDS-C-linearis_contig10:2980755..2980922Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2980756..2980922 -
1690879643.2076938-CDS-C-linearis_contig10:2980755..29809221690879643.2076938-CDS-C-linearis_contig10:2980755..2980922Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2980756..2980922 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.627.1

>prot_C-linearis_contig10.627.1 ID=prot_C-linearis_contig10.627.1|Name=mRNA_C-linearis_contig10.627.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=107bp
MDNPSLTQSQREALRVEGFGPTALHFVKNQGGWMFNFIFAHLLFWLFGFT
ALLDYGYSDLNQSASGQIKSGPSGSGVGIITTLLMCVATLVVVIKAIRYD
PNADLA*
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mRNA from alignment at C-linearis_contig10:2979415..2980922-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.627.1 ID=mRNA_C-linearis_contig10.627.1|Name=mRNA_C-linearis_contig10.627.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1508bp|location=Sequence derived from alignment at C-linearis_contig10:2979415..2980922- (Chordaria linearis ClinC8C monoicous)
ATGGACAACCCATCGCTCACGCAGTCCCAGCGGGAAGCCCTTCGCGTTGA
GGGCTTCGGCCCGACGGCGCTCCACTTCGTCAAGAACCAGGGGGGCTGGA
TGTTCAACTTTATCTTCGCGCACCTGCTCTTCTGGCTCTTCGGCTTCACG
GCGCTCCTCGACTATGGGTGAGAAGAGAGCGGATCCGACGACCGACGACC
GGAAGGAAATATTTTGTTTGGGCACGATGTTGTTTCCCGTGGTTATCTGC
TCGTTTTCGGGGGCCAAGAGAGTTGCCATTTCGATCTGACGTCGCACACG
CGACGCAACAACCACCCACGACACTGTACAAAATGTCTACAGATACCTGT
TTGATGGCAATGGTGCATGTGGTAGAACGAACTCAACAATGAGGACCCCG
CACGGAACCGCGCTTACATTCCTTCATTTTTCGTGAACAAAATCGCCGTG
CGTTTGCACCCGAAATAGCAGCCTTGTGGCTCGACCATCCTCGTGTCGCG
TGTCTGTAGGTAGGGTTGTGCCCCAGCTTGCGCAAGGAGCACCGGCGTTT
TGCATTGCCGACTTCTTGCCCTGACTGCGCGCTCGCCCTGCGGTCGTCTG
CATCTTCCTTTGTCTCATGTCTGCCGACGCGTGCAGGTACTCTGACCTGA
ACCAGAGCGCGTCCGGACAGATCAAGTCGGGGCCGTCGGGGTCTGGGGTG
GGCATCATCACGACGCTTCTCATGTGCGTCGCCACCCTGGTGGTGGTGAT
CAAGGCGGTAAGTAAAGCCCTGGCGTTGGTTGTTGTTGCTGCTACGCTTA
CAGCAGAAGTGTCTTTTGGTTTGTGGGCCCTGGGATTTTTCGCGCGTGAG
CACGTGGATCAATTATTTTTATTTTCGTTGCCCTCTCGAAGAAAAGCACG
GCCTCCATTTTTGTGCCGGTTTCTGTTTTACGTTGTCACCTGCTTTTTTT
TTTTGGCTGCTATCAGCTCTCATTGAAATCACGATCTGTGAAGCGTTATC
ACGAGGCCCTGTTTGTAGTTTGGACTAAGGAACAACGCGATGGTTTCAAT
TGGGTTTTCTTTCTCTCGCGCCTGAAGCAAACCTCGTTTACCTTTTAAAG
CTTTTTTTCCTGTGAGTTGAGTCGTATAACAGCAGTTGTGTTGGCTGTCG
ACCCGAATACCCATCGTTTTGAGAGACGACACAAATCCGGGGGGCACAAA
GAGCGCAATGTTCAAAACCATGTTTCACCCACTAAACGGATCTTGTATCA
ACGTATGTAGCCCAGGACGGCGAGGCATATATGCCTGCCTCGCCTACCAC
GGCCATTTCTATGCCTCACTCCGTCTCCGCCCTGCTGCTTTGCTGCCTGC
CGCCCGCCCCTGCCTTGTGTTTATATGCTATAGATCCGGTACGACCCGAA
TGCCGATCTCGCTTAGACTCATTCGATAATATCCTAGAGCAGCGGGGGGG
CGGCGACGCGGGGGGGGCACGAGGGGGAGAAGACGCATGGAGGAGGCTAG
CGGGGGCT
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Coding sequence (CDS) from alignment at C-linearis_contig10:2979415..2980922-

>mRNA_C-linearis_contig10.627.1 ID=mRNA_C-linearis_contig10.627.1|Name=mRNA_C-linearis_contig10.627.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at C-linearis_contig10:2979415..2980922- (Chordaria linearis ClinC8C monoicous)
ATGGACAACCCATCGCTCACGCAGTCCCAGCGGGAAGCCCTTCGCGTTGA
GGGCTTCGGCCCGACGGCGCTCCACTTCGTCAAGAACCAGGGGGGCTGGA
TGTTCAACTTTATCTTCGCGCACCTGCTCTTCTGGCTCTTCGGCTTCACG
GCGCTCCTCGACTATGGATGGACAACCCATCGCTCACGCAGTCCCAGCGG
GAAGCCCTTCGCGTTGAGGGCTTCGGCCCGACGGCGCTCCACTTCGTCAA
GAACCAGGGGGGCTGGATGTTCAACTTTATCTTCGCGCACCTGCTCTTCT
GGCTCTTCGGCTTCACGGCGCTCCTCGACTATGGGTACTCTGACCTGAAC
CAGAGCGCGTCCGGACAGATCAAGTCGGGGCCGTCGGGGTCTGGGGTGGG
CATCATCACGACGCTTCTCATGTGCGTCGCCACCCTGGTGGTGGTGATCA
AGGCGGTACTCTGACCTGAACCAGAGCGCGTCCGGACAGATCAAGTCGGG
GCCGTCGGGGTCTGGGGTGGGCATCATCACGACGCTTCTCATGTGCGTCG
CCACCCTGGTGGTGGTGATCAAGGCGATCCGGTACGACCCGAATGCCGAT
CTCGCTTAGATCCGGTACGACCCGAATGCCGATCTCGCTTAG
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