mRNA_C-linearis_contig10.616.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig10.616.1 vs. uniprot
Match: D7G8R9_ECTSI (Acetyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8R9_ECTSI) HSP 1 Score: 426 bits (1096), Expect = 1.050e-140 Identity = 254/405 (62.72%), Postives = 295/405 (72.84%), Query Frame = 3 Query: 12 MTEALAKIAEVEFRFAGAEDTAEILCLANNAFSVEKGDSDLAFTTGDRVNKEEVDACLNGAGGKKRWLVLETPHPEEKMAAACLICTGSTPGTGSVEVLAVEPGRQREGLGSHMLRRAEGILLNFRCRFVKMRVPQWREDVLGWATKQGYKETGGGVWGELDGENAEGLTRPTRYFVLTRDLLTDKKVVGTFGDGTARFTAATAAXXXXXXXXXXXXXVNLAANPAPSTVSWRAEEECAKGREAVDESGRLAGFLSTVLEGLVGAEDKHQNVEENSEGGADLAAAPIADVAVG-KSATPSSSEVLFPLLPPATSNKSGVSAGVF--RALGFTTSGSTASTAASSSVSASNDELEVVEVQSVGTSGEE-----ESIEDLLTSLMRTLNTEQGRADFR-LLASGATS 1199
M EA KIAEV+FRFAG EDTAEI+ L N+AFSVEKG S LAFTT DRV+KEEVDACL+GA +KRWLVLETPHPEE M AACLIC G+TPG GSVE+LAVEP RQ GLGSH+LRRAEGILLNFRCRFV+MRVPQWREDVLGW K+GYKETGGGVWGELDGE+AEGLTRPTRYF+LT DLLTD+KV GTFGDGT RFTAA AA + PA S S + + ++SGRLAGFLS+VL+GL AE + Q+ + D+AAAP+AD++VG ++ATPS PL PA S+ +G S G G TT+ STA+ SV AS ++ EVVE+ SVG G+E ES+EDLL SLMRTLNTEQGRADFR L A+G+TS
Sbjct: 1 MMEAPTKIAEVDFRFAGPEDTAEIVTLVNDAFSVEKGGSGLAFTTRDRVSKEEVDACLHGACAEKRWLVLETPHPEETMVAACLICAGTTPGKGSVELLAVEPARQGRGLGSHLLRRAEGILLNFRCRFVRMRVPQWREDVLGWVGKRGYKETGGGVWGELDGESAEGLTRPTRYFMLTHDLLTDEKVAGTFGDGTTRFTAAAAAAAERVALGSTRKPTS---KPASSEASRGLDGNNTVQSKDEEDSGRLAGFLSSVLKGLADAEVEDQDGIDAK----DVAAAPMADMSVGAEAATPS-----CPLQYPAPSDGTGASEGATCQPCAGTTTNISTAAPGEDGSVPASRNDFEVVELPSVGGGGDEAADGEESVEDLLGSLMRTLNTEQGRADFRRLAAAGSTS 393
BLAST of mRNA_C-linearis_contig10.616.1 vs. uniprot
Match: A0A6H5L4U8_9PHAE (N-acetyltransferase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4U8_9PHAE) HSP 1 Score: 344 bits (882), Expect = 3.090e-109 Identity = 216/362 (59.67%), Postives = 253/362 (69.89%), Query Frame = 3 Query: 168 EVDACLNGAGGKKRWLVLETPHPEEKMAAACLICTGSTPGTGSVEVLAVEPGRQREGLGSHMLRRAEGILLNFRCR-FVKMRVPQWREDVLGWATKQGYKETGGGVWGELDGENAEGLTRPTRYFVLTRDLLTDKKVVGTFGDGTARFTAATAAXXXXXXXXXXXXXVNLAANPAPSTVSWRAEEECAKG-----REAVDE--SGRLAGFLSTVLEGLVGAE-DKHQNVEENSEGGADLAAAPIADVAVG-KSATPSSSEVLFPLLPPATSNKSGVSAGVF--RALGFTTSGSTASTAASSSVSASNDELEVVEVQSVGTS-GE----EESIEDLLTSLMRTLNTEQGRADFRLLAS-GATS 1199
+VDACL+GA +KRWLVLETPHPEE M AACLICTG+TPG GSVE+LAV+P Q GLGSH+LRRAEGILLNFRCR FV+MRVPQWREDVLGWA K+GYKETGGG+WGELD E+AE LTRPTRYF+LT DLLTDKKV GTFGDGTAR+TAA AA +A A S E +KG R+A DE SGRLAGFLS+VL+GL AE + + ++ A AP+AD+AVG +ATPS P LPPA S+++G S G +G T + S A+ SV A D+ EVVE+ SVG GE EES+EDLL+SLMRTLNTEQGRADFR LA+ G+TS
Sbjct: 13 QVDACLHGACVEKRWLVLETPHPEETMVAACLICTGTTPGKGSVELLAVKPALQGRGLGSHLLRRAEGILLNFRCRWFVRMRVPQWREDVLGWAGKRGYKETGGGLWGELDRESAEDLTRPTRYFMLTHDLLTDKKVAGTFGDGTARYTAAAAAAAE-----------RVALGGARRPTSNSTSSEASKGLDGSTRKAKDEEDSGRLAGFLSSVLKGLADAEVEDQEGIDAKG-----FATAPMADMAVGVAAATPS-----CPFLPPAPSDETGASDGATCQPCVGTTANNSIAAAGEHGSVPALRDDFEVVELPSVGGGDGEAVDREESVEDLLSSLMRTLNTEQGRADFRRLAAIGSTS 353
BLAST of mRNA_C-linearis_contig10.616.1 vs. uniprot
Match: A0A7S2WC10_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WC10_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 4.820e-15 Identity = 57/177 (32.20%), Postives = 89/177 (50.28%), Query Frame = 3 Query: 42 VEFRFAGAEDTAEILCLANNAFSVEKGDSDLAFTTGDRVNKEEVDACLNGAGGKKRWLVLETPHPEEKMAAACLICTGSTPGTGS-----VEVLAVEPGRQREGLGSHMLRRAEGILLNFRCRFVKMRVPQWREDVLGWATKQGYKETGGGVWGELDGENAEGLTRPTRYFVLTRDL 557
++FRFA ED +I+ + N+AF+ D +F G R+ + V + G + RWL+LETP PEE + A+ + G G + LAV P + +G+GS +LR+ E CR + + +P E V W +++G+K+ GGG+W +G R Y RDL
Sbjct: 10 LDFRFADEEDVDDIVRVVNDAFA----GPDHSFRAGPRLARPLVVEDTDRPG-QARWLLLETPAPEENVVASVRLQLDDDAGLGRGKMAILTALAVHPDWRGKGVGSLLLRKCEASSRGLGCRSISIDLPMSAESVQSWLSRRGWKQLGGGLW------EGDGYDRAMNYVTYVRDL 175
BLAST of mRNA_C-linearis_contig10.616.1 vs. uniprot
Match: A0A7S2D077_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D077_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 2.430e-13 Identity = 63/202 (31.19%), Postives = 96/202 (47.52%), Query Frame = 3 Query: 39 EVEFRFAGAEDTAEILCLANNAFSVE--KGDSDL------------AFTTGDRVNK-----EEVDACLNGAGGKKRWLVLETPHPEEKMAAACLICTGSTPGT-----GSVEVLAVEPGRQREGLGSHMLRRAEGILLNFRCRFVKMRVPQWREDVLGWATKQGYKETGGGVWGELDGENAEGLTRPTRYFVLTRDLLTDKK 572
+++ RFA ED +I + N AF++E + D+ L AF R+ E++ G RW+VLETP PEEK+ AA + G G + L+VEP Q G+G+ +L R+E + CR V + V RE++ W K+G+KE GGG+W E ++ + T Y +DL +K
Sbjct: 59 KLDLRFADEEDAEDIAAVVNAAFALEVRRPDNSLDVGVAPPPHAASAFRATARLADMAALVAELEQSRRGGSEAVRWIVLETPCPEEKVVAAVAVSIIEDAGLRRGKMGRLLCLSVEPTSQGGGVGTQLLLRSEAFCRSQGCRSVGIDVAMKREELQPWLKKRGWKENGGGLWSE----DSPAIAVNTEYLTFVKDLTKPEK 256
BLAST of mRNA_C-linearis_contig10.616.1 vs. uniprot
Match: A0A2V9BGJ3_9BACT (N-acetyltransferase domain-containing protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9BGJ3_9BACT) HSP 1 Score: 62.8 bits (151), Expect = 8.930e-8 Identity = 47/145 (32.41%), Postives = 67/145 (46.21%), Query Frame = 3 Query: 39 EVEFRFAGAEDTAEILCLANNAFSVEKGDSDLAFTTGDRVNKEEVDACLNGAGGKKRWLVLETPHPEEKMAAACLICTGSTPGTGSVEVLAVEPGRQREGLGSHMLRRAEGILLNFRCRFVKMRVPQWREDVLGWATKQGYKETG 473
E R A + DT ++ L N AF VEK GDR+N E+V A ++L+LE E +C+ P G + +LAV+P RQ++GLG + AE L C F +RV R ++ + GY TG
Sbjct: 13 EYRVRLADSADTDALVRLINAAFIVEK-----PIIDGDRINAEKVSALFETG----KFLLLE----EGSQLVSCIYAEIKEPRRGYLGLLAVDPNRQKKGLGRRTVEAAESFLKQAGCEFADLRVVNVRAELQPIYERLGYSVTG 144
BLAST of mRNA_C-linearis_contig10.616.1 vs. uniprot
Match: A0A7S3M8W4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M8W4_9STRA) HSP 1 Score: 59.7 bits (143), Expect = 4.130e-6 Identity = 54/175 (30.86%), Postives = 78/175 (44.57%), Query Frame = 3 Query: 21 ALAKIAEVEFRFAGAEDTAEILCLANNAFSVE--KGDSDLAFTT-GDRVNKEEVDACLNGAGGKKRWLVLETPHPEEKMAAACLICTGSTPGTGSVEVLAVEPGRQREGLG--SHMLRRAEGILLNFRCRFVKMRVPQWREDVLGWATKQGYKETGGGVWGELDGENAEGLTRPT 530
A +K +++FRFA D +I+ N A+S+E + F G +V EV+ L K WLVLETP PEE + A + + G V+V V L +L + E + N R + QWR D+ T GY+E G +W E + LT+PT
Sbjct: 29 AKSKKQKLDFRFADEMDGMDIVQFVNEAYSIEWNPDSGPMCFRKEGYKVETNEVEKDLLSMPTK--WLVLETPMPEELIVGAARVKYDAAR-NGRVDVFCVAGADADTKLSIMKQLLSKVETVCYNIGLRSCIVEAAQWRTDLEELFTSCGYEEASGHIWPE---DRQHELTKPT 197 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.616.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.616.1 >prot_C-linearis_contig10.616.1 ID=prot_C-linearis_contig10.616.1|Name=mRNA_C-linearis_contig10.616.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=397bp MTEALAKIAEVEFRFAGAEDTAEILCLANNAFSVEKGDSDLAFTTGDRVNback to top mRNA from alignment at C-linearis_contig10:2906674..2911184+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.616.1 ID=mRNA_C-linearis_contig10.616.1|Name=mRNA_C-linearis_contig10.616.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4511bp|location=Sequence derived from alignment at C-linearis_contig10:2906674..2911184+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:2906674..2911184+ >mRNA_C-linearis_contig10.616.1 ID=mRNA_C-linearis_contig10.616.1|Name=mRNA_C-linearis_contig10.616.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2382bp|location=Sequence derived from alignment at C-linearis_contig10:2906674..2911184+ (Chordaria linearis ClinC8C monoicous)back to top |