mRNA_C-linearis_contig10.598.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig10.598.1 vs. uniprot
Match: D7G2C8_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C8_ECTSI) HSP 1 Score: 325 bits (832), Expect = 2.110e-111 Identity = 172/199 (86.43%), Postives = 178/199 (89.45%), Query Frame = 1 Query: 1 MPSTLSKLYHAAARGSVERTAALLSQGSVDIDGGYGDVGRTPLMVASTMGYLRVVRVLLRLGARVSVADNDGATALHLSVVNKHLAVSKALTKAGADLEARVYHHQALGVDGTPLHVAAAKGFHKGMVVLIHAGANVDAVHAISWCWPSALEKSTPIVRMLPGLKRRATKPRVLLAALSRYNNKQDGPFLGYSPDKNGE 597 MPSTLSKLY AAA GSVERT A+LSQGSVDIDGGYGDVGRTPLM ASTMGYLRVVRVLLR GARVSVADNDGATALHLS+V KHLAVS+AL KAGA +EAR GVDGTPLHVAAAKGFHKGMV+LIH VDAVHAISWCWPSALEKS PIVR+LPGLKRRATKP VLLAALSRYNNKQDGPFLGYSPDKNGE Sbjct: 1 MPSTLSKLYDAAASGSVERTVAVLSQGSVDIDGGYGDVGRTPLMAASTMGYLRVVRVLLRPGARVSVADNDGATALHLSIVIKHLAVSRALVKAGAGVEAR-------GVDGTPLHVAAAKGFHKGMVMLIH----VDAVHAISWCWPSALEKSKPIVRVLPGLKRRATKPCVLLAALSRYNNKQDGPFLGYSPDKNGE 188
BLAST of mRNA_C-linearis_contig10.598.1 vs. uniprot
Match: D7G449_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G449_ECTSI) HSP 1 Score: 216 bits (551), Expect = 1.190e-68 Identity = 116/134 (86.57%), Postives = 121/134 (90.30%), Query Frame = 1 Query: 1 MPSTLSKLYHAAARGSVERTAALLSQGSVDIDGGYGDVGRTPLMVASTMGYLRVVRVLLRLGARVSVADNDGATALHLSVVNKHLAVSKALTKAGADLEARVYHHQALGVDGTPLHVAAAKGFHKGMVVLIHAG 402 MPSTLSKLY AAA GSVERT A+LSQGSV+IDGGYGDVGRTPLM ASTMGYLRVVRVLLRLGARVSVADNDGATALHLS+VNKHLAVSKAL KAGA +EAR GVDGTPLHVAAAKGFHKGMV+LIHAG Sbjct: 1 MPSTLSKLYDAAASGSVERTVAVLSQGSVNIDGGYGDVGRTPLMAASTMGYLRVVRVLLRLGARVSVADNDGATALHLSIVNKHLAVSKALVKAGAGVEAR-------GVDGTPLHVAAAKGFHKGMVMLIHAG 127
BLAST of mRNA_C-linearis_contig10.598.1 vs. uniprot
Match: A0A6H5JL58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL58_9PHAE) HSP 1 Score: 226 bits (575), Expect = 9.580e-66 Identity = 120/139 (86.33%), Postives = 125/139 (89.93%), Query Frame = 1 Query: 1 MPSTLSKLYHAAARGSVERTAALLSQGSVDIDGGYGDVGRTPLMVASTMGYLRVVRVLLRLGARVSVADNDGATALHLSVVNKHLAVSKALTKAGADLEARVYHHQALGVDGTPLHVAAAKGFHKGMVVLIHAGANVDA 417 MPSTLSKLYHA A GSVERT A+LSQGSVDIDGGYGDVGRTPLM A TMGYLRVVRVLLRLGARVSVADNDGATALHLS+VNKHLAVSKAL KAGA +EAR GVDGTPLHVAAAKGFHKGMV+LIHAGANVD+ Sbjct: 1 MPSTLSKLYHAPASGSVERTVAVLSQGSVDIDGGYGDVGRTPLMAAFTMGYLRVVRVLLRLGARVSVADNDGATALHLSIVNKHLAVSKALVKAGAGVEAR-------GVDGTPLHVAAAKGFHKGMVMLIHAGANVDS 132
BLAST of mRNA_C-linearis_contig10.598.1 vs. uniprot
Match: A0A6H5JNS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS0_9PHAE) HSP 1 Score: 192 bits (488), Expect = 2.030e-56 Identity = 139/366 (37.98%), Postives = 143/366 (39.07%), Query Frame = 1 Query: 133 VASTMGYLRVVRVLLRLGARVSVADNDGATALHLSVVNKHLAVSKALTKAGADLEARVYHHQALGVDGTPLHVAAAKGFHKGMVVLIHAGAN--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VDAVHAISWCWPSALEKSTPIVRMLPGLKRRATKPRVLLAALSRYNNKQDGPFLGYSPDKNG 594 VASTMGYLRVVRVLLRLGARVS ADNDGATALHLS+VNKHLAVSKAL KAGADLEAR+ HHQALGV TPLHVAAAKGFHKGMV+LIHAG VDAVHA SWCWPSALEKSTPIVRMLPGLKRRATKPRV LA LSRYNNKQDGPFLGY+P KNG Sbjct: 37 VASTMGYLRVVRVLLRLGARVSAADNDGATALHLSIVNKHLAVSKALVKAGADLEARIDHHQALGVGCTPLHVAAAKGFHKGMVMLIHAGVKGFVGAKANPILAAYDGESLPLDVAAENGQLGVVRELEQRFGIDGCSCDGGAQALVEAASQNQVDIVTFLFDNGVVDAEGIALCAAVEGRREECIELLLRTQGCNANAIARAYANMTHDTTLPMYSNQLFPDTPLVSAFELGGFYSPRITRLLLGAGADVASRVRYEGIEGDCVMHDTPLTIAESTLPLWETYGETSEDVEFGLKGVIRLLKQVDAVHATSWCWPSALEKSTPIVRMLPGLKRRATKPRVALAPLSRYNNKQDGPFLGYTPSKNG 402
BLAST of mRNA_C-linearis_contig10.598.1 vs. uniprot
Match: A0A6H5K1W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE) HSP 1 Score: 176 bits (446), Expect = 1.040e-47 Identity = 144/400 (36.00%), Postives = 160/400 (40.00%), Query Frame = 1 Query: 37 ARGSVERTAALLSQGSVDIDGGYGDVGRTPLMVASTMGYLRVVRVLLRLGARVSVADNDGATALHLSVVNKHLAVSKALTKAGADLEAR------VYHHQALGVDG------TPLHVAAAKG---------------------------------------------------------------------------FHKGMV---------------------------------------------------------------------------VLIHAGANV------------------------------------------------------DAVHAISWCWPSALEKSTPIVRMLPGLKRRATKPRVLLAALSRYNNKQDGPFLGYSPDK 588 ARGSVERT ALLS+GSVDIDG YGD GRTPLMVASTMGYLRV RVLLRLGA VSVADNDGATALHLSV N+HLAVSKAL KAGA++EAR V H VD TPL+ +A +G F G+V +L+ AGA+V DAVHAISWCWP+ALEKSTPIVRMLPGLKRRATKPRV+LAALSRYN+KQDGP S ++ Sbjct: 5 ARGSVERTVALLSRGSVDIDGSYGDAGRTPLMVASTMGYLRVERVLLRLGAGVSVADNDGATALHLSVFNQHLAVSKALIKAGAEVEARCVDGMVVLIHAGANVDSEQESGATPLYTSARQGRLEDVKVLVGTKANPLVPAYDGESLPLDAAAENGYLGVVRELVQRFGIDGCSRDGGAQALVEAASQNQTDIVTFLFDNGVVDAEGIALCAAVEGRREEFVKLLLRRQGCNANTSTRAYANMAHDSTLPMYSNQLFQDTPLVSAFELGGFYSPRITRLLLDAGADVASRVRYEGIEGDCVMHDTPLAIAESILPLWETYGETSEDVEFGLKGVIRLLKQVDAVHAISWCWPNALEKSTPIVRMLPGLKRRATKPRVVLAALSRYNDKQDGPLPSGSVER 404
BLAST of mRNA_C-linearis_contig10.598.1 vs. uniprot
Match: A0A6H5KSL5_9PHAE (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6H5KSL5_9PHAE) HSP 1 Score: 127 bits (320), Expect = 1.640e-31 Identity = 79/143 (55.24%), Postives = 103/143 (72.03%), Query Frame = 1 Query: 1 MPSTLSK-LYHAAARGSVERTAALLSQGSVDIDGGYGDVGRTPLMVASTMGYLRVVRVLLRLGARVSVADNDGATALHLSVVNKHLAVSKALTKAGADLEAR--VYHHQALGVDG-TPLHVAAAKGFHKGMVVLIHAGANVDA 417 +PST S LY AA+ GSVERT LLS G +ID + G T LM A+ GYLR+VRVLLR GA VSV+ +DG TALH ++ ++LAV+KAL KAGA++EA+ + ++ V G TPLH+AA +GF +GMV LI+AGANVD+ Sbjct: 13 VPSTTSDTLYCAASSGSVERTLDLLSGGFTEIDRRCDEHGVTALMCAANKGYLRIVRVLLRFGADVSVSTDDGHTALHFAIGGRNLAVTKALIKAGAEVEAKADLVRMESEVVQGQTPLHLAAGEGFCEGMVALINAGANVDS 155
BLAST of mRNA_C-linearis_contig10.598.1 vs. uniprot
Match: D8LH66_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH66_ECTSI) HSP 1 Score: 117 bits (293), Expect = 1.790e-29 Identity = 77/131 (58.78%), Postives = 88/131 (67.18%), Query Frame = 1 Query: 1 MPSTLSKLYHAAARGSVERTAALLSQGSVDIDGGYGDVGRTPLMVASTMGYLRVVRVLLRLGARVSVADNDGATALHLSVVNKHLAVSKALTKAGADLEARVYHHQALGVDGTPLHVAAAKGFHKGMVVLI 393 MPSTLSK A GS++ T A + ID G GD +TPLMVAS +G RVVR LLR GA VSVAD+DG TALH SV + HLAVSK L +AGADLEAR H G TPLHVAA KGF +GM +L+ Sbjct: 1 MPSTLSK-----ASGSIDPTIA-----TTGIDRGCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGCTALHHSVYHNHLAVSKDLIEAGADLEAR---H---GGKDTPLHVAATKGFCQGMKLLM 115
BLAST of mRNA_C-linearis_contig10.598.1 vs. uniprot
Match: D8LP44_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP44_ECTSI) HSP 1 Score: 92.0 bits (227), Expect = 2.200e-18 Identity = 65/142 (45.77%), Postives = 76/142 (53.52%), Query Frame = 1 Query: 1 MPSTLSKLYHAAARGSVERTAALLSQGSVDIDGGYGDVGRTPLMVASTMGYLRVVRVLLRLGARVSVADNDG--ATALHLSVVNKHLAVSKALTKAGADLEARVYHHQALGVDG-TPLHVAAAKGFHKGMVVLIHAGANVDA 417 MPST S LY+AA GSVERT LLS G +ID + G T LM A+ GYLR+VRVLLR GA VSV+ +DG +A H V G TPLH+A +GF GMV LI AGANVD+ Sbjct: 1 MPSTTSTLYNAAWTGSVERTLDLLSDGFTEIDRRCEENGVTALMCAANKGYLRIVRVLLRFGADVSVSTDDGHXXXXXXXXXXXXXXXXXXXXXXXXXXXKADFLHPDQEVVQGQTPLHLATGEGFCDGMVALIDAGANVDS 142
BLAST of mRNA_C-linearis_contig10.598.1 vs. uniprot
Match: A0A6H5L5L0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L0_9PHAE) HSP 1 Score: 85.9 bits (211), Expect = 4.410e-16 Identity = 51/108 (47.22%), Postives = 64/108 (59.26%), Query Frame = 1 Query: 325 GVDGTPLHVA-------AAKGFHKGMVV----LIHAGANVDAVHAISWCWP---------SALEKSTPIVRMLPGLKRRATKPRVLLAALSRYNNKQDGPFLGYSPDK 588 G GTPL +A ++ H+ MV +I +AVH++SW WP ++ +K T I RM+P LKRRA KPRVLLAALSRYN KQDG FLGY P+K Sbjct: 374 GFIGTPLDLATSYFRRFSSMSVHREMVPELKGVIRLLRQEEAVHSVSWTWPIDNGRSVERASRKKPTSIARMVPLLKRRAAKPRVLLAALSRYNEKQDGAFLGYLPEK 481
BLAST of mRNA_C-linearis_contig10.598.1 vs. uniprot
Match: A0A6H5JHQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ8_9PHAE) HSP 1 Score: 81.6 bits (200), Expect = 1.260e-14 Identity = 47/100 (47.00%), Postives = 59/100 (59.00%), Query Frame = 1 Query: 334 GTPLHVAAA-----------KGFHKGMVVLIHAGANVDAVHAISWCWP---------SALEKSTPIVRMLPGLKRRATKPRVLLAALSRYNNKQDGPFLG 573 GTPL +A + + +G+ +I +AVHA+SW WP ++ +KST I RMLP LKRRA KPRVLLAA+SRYNNK DG FLG Sbjct: 323 GTPLELATSYFRRFSPMRVHREMVRGLKGVIRLLRQEEAVHAVSWTWPIDTGRSVERASRKKSTSIARMLPLLKRRAAKPRVLLAAMSRYNNKHDGAFLG 422 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.598.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 22 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.598.1 >prot_C-linearis_contig10.598.1 ID=prot_C-linearis_contig10.598.1|Name=mRNA_C-linearis_contig10.598.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=200bp MPSTLSKLYHAAARGSVERTAALLSQGSVDIDGGYGDVGRTPLMVASTMGback to top mRNA from alignment at C-linearis_contig10:2782309..2783714+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.598.1 ID=mRNA_C-linearis_contig10.598.1|Name=mRNA_C-linearis_contig10.598.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1406bp|location=Sequence derived from alignment at C-linearis_contig10:2782309..2783714+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:2782309..2783714+ >mRNA_C-linearis_contig10.598.1 ID=mRNA_C-linearis_contig10.598.1|Name=mRNA_C-linearis_contig10.598.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1200bp|location=Sequence derived from alignment at C-linearis_contig10:2782309..2783714+ (Chordaria linearis ClinC8C monoicous)back to top |