mRNA_C-linearis_contig10.587.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.587.1
Unique NamemRNA_C-linearis_contig10.587.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig10.587.1 vs. uniprot
Match: D7G8P6_ECTSI (Adenosylmethionine decarboxylase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8P6_ECTSI)

HSP 1 Score: 730 bits (1884), Expect = 9.160e-260
Identity = 367/419 (87.59%), Postives = 384/419 (91.65%), Query Frame = 2
Query:  308 TAGPGTSQGRERGADLDVSGGSSSTRP------VSDLSDSSGGEDDMLQKLDTQAAGEDGEEREYTGCFEGPEKTLEVCFKPGIGSTAGCRALTRPSLDRMCSRAKCTILHQISNDYLDAYVLSESSLFVYPHKVVMKTCGTTTLLRCVATLLKAALDEQGLVLEWMGYSRKNFTFPGDQLFPHSSFQQELQYLGAHAHLEKRLDGAGYVLGPVTGDHWFVYVADKCDRPDYTATDRTINMMMFDMHPDTAKYFYKEVCPTGREMTKKTGIAELVPGAVVDDFAFDPCGYSMNAILYDSYYTIHVTPEESCSYASFETNNPFKSYRSIINNVLNVFRPKRWVLTMVADKAGLDTITENPFDVEKIDLPLRKAQYIRTSVCSTVVEGDCVCIMGAWDMRDKEKAVPTAEGTGRPRTGSLA 1546
            T+ P  +QG +R A    SGGSSS  P      VSDLSDS GGEDD+L K+D+QA   DGEEREYTGCFEGPEKTLEVCFKPGIG+  GCRALTR SLDRMCSRAKCTILHQISNDYLDAYVLSESSLFVYPHKVVMKTCGTTTLLRCVATLL+AAL++QGLVLEWMGYSRKNFTFP DQLFPHSSF+QELQYL AH HLEKRL+GAGYVLGPVTGDHWFVY+ADKCDRPDYTATDRTINMMMFDMHPDTAK+FYKE CPTGREMTKKTGIAELVPGAVVDDFAFDPCGYSMNAILYDSYYTIHVTPEESCSYASFETNNPFKSYRSIINNVLNVFRPKRWVLTMVADKAGL+TITENPFDVEKI+LPLRKAQYIRTSVCSTVVEGDCVCIMGAWDMRDK   VPT +G GRPRT SLA
Sbjct:   16 TSSPPVAQGSDREAQPGGSGGSSSDAPETSSATVSDLSDS-GGEDDVLTKVDSQAG--DGEEREYTGCFEGPEKTLEVCFKPGIGNPQGCRALTRQSLDRMCSRAKCTILHQISNDYLDAYVLSESSLFVYPHKVVMKTCGTTTLLRCVATLLQAALEQQGLVLEWMGYSRKNFTFPSDQLFPHSSFEQELQYLRAHTHLEKRLNGAGYVLGPVTGDHWFVYIADKCDRPDYTATDRTINMMMFDMHPDTAKHFYKEACPTGREMTKKTGIAELVPGAVVDDFAFDPCGYSMNAILYDSYYTIHVTPEESCSYASFETNNPFKSYRSIINNVLNVFRPKRWVLTMVADKAGLNTITENPFDVEKIELPLRKAQYIRTSVCSTVVEGDCVCIMGAWDMRDK--GVPT-KGAGRPRTVSLA 428          
BLAST of mRNA_C-linearis_contig10.587.1 vs. uniprot
Match: A0A835YIR2_9STRA (Adenosylmethionine decarboxylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIR2_9STRA)

HSP 1 Score: 490 bits (1261), Expect = 8.370e-166
Identity = 247/377 (65.52%), Postives = 298/377 (79.05%), Query Frame = 2
Query:  389 VSDLSDSSGGEDDMLQKLDTQAAGEDGEEREYTGCFEGPEKTLEVCFKPGIGSTAGCRALTRPSLDRMCSRAKCTILHQISNDYLDAYVLSESSLFVYPHKVVMKTCGTTTLLRCVATLLK--AALDEQGLVLEWMGYSRKNFTFPGDQLFPHSSFQQELQYLGAHAHLEKRLDGAGYVLGPVTGDHWFVYVADKCDRPDYTATDRTINMMMFDMHPDTAKYFYKE-VCPTGRE----------MTKKTGIAELVPGAVVDDFAFDPCGYSMNAILYDSYYTIHVTPEESCSYASFETNNPFKSYRSIINNVLNVFRPKRWVLTMVADKAGLDTITENPFDVEKIDLPLRKAQYIRTSVCSTVVEGDCVCIMGAWDM 1480
             SDLSDS G E  + + L+   AG+D EEREYTGCFEGPEKTLEVCFKPG+G   GCRALTR  LD++C RA+CTIL ++SN +LDAYVLSESSLFVY +KVV+KTCGTTTLLRCVA LL+   A    GL LEW+GYSRKNFTFPGDQL+PH+SF+QEL YL  H HL  RLDG+G+VLGPVTGDHWFVYVADK DRP++TATDR  N+MMFDMHP++A  F ++ + P GR           MT  +GIA+LVPGA +D  AF+PCGYSMNAI ++SYYTIHVTPE +CSYASFETNNP++SYRSI+NNVL VFRP+R+VLTM+AD+AGL T+ ENPFD   + +P   A Y RTS+CST VEGDC  ++  +++
Sbjct:   12 ASDLSDS-GSEHTLPEVLE---AGDDDEEREYTGCFEGPEKTLEVCFKPGVGDARGCRALTREQLDQICKRARCTILSRMSNAHLDAYVLSESSLFVYRYKVVIKTCGTTTLLRCVAYLLQHAGAHGGLGLELEWVGYSRKNFTFPGDQLYPHASFEQELAYLRQHQHLSARLDGSGHVLGPVTGDHWFVYVADKYDRPNFTATDRICNIMMFDMHPESAACFVRDDIGPDGRHTTTARAAGHAMTVASGIADLVPGAAIDACAFEPCGYSMNAIQFESYYTIHVTPEAACSYASFETNNPYRSYRSIVNNVLGVFRPRRFVLTMMADEAGLKTMAENPFDQLSVPIPGFGA-YARTSMCSTKVEGDCCLLLANYNL 383          
BLAST of mRNA_C-linearis_contig10.587.1 vs. uniprot
Match: A0A835ZL65_9STRA (Adenosylmethionine decarboxylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZL65_9STRA)

HSP 1 Score: 487 bits (1253), Expect = 9.210e-164
Identity = 245/389 (62.98%), Postives = 295/389 (75.84%), Query Frame = 2
Query:  365 GGSSSTRPVSDLSDSSG--GEDDMLQKLDTQAAGEDGEEREYTGCFEGPEKTLEVCFKPGIGSTAGCRALTRPSLDRMCSRAKCTILHQISNDYLDAYVLSESSLFVYPHKVVMKTCGTTTLLRCVATLLKAALDEQGLVLEWMGYSRKNFTFPGDQLFPHSSFQQELQYLGAHAHLEKRLDGAGYVLGPVTGDHWFVYVADKCDRPDYTATDRTINMMMFDMHPDTAKYFYK------------EVCPTGREMTKKTGIAELVPGAVVDDFAFDPCGYSMNAILYDSYYTIHVTPEESCSYASFETNNPFKSYRSIINNVLNVFRPKRWVLTMVADKAGLDTITENPFDVEKIDLPL--RKAQYIRTSVCSTVVEGDCVCIMGAWDMR 1483
            GG   +  +SDLSDS      DD L +   Q      EEREYTG FEGPEKTLEVCFKPG+G   GCRALTR  LD++C RA+CTIL ++SN +LDAYVLSESSLFVY HKVV+KTCGTTTLLRC+A LL+ A    G+ LEW+GYSRKNFTFPGDQL+PH+SF+QEL YL  H HL  RLDG+G+VLGPVTGDHWFVYVADK DRP++TATDR IN+MMFD+HPD A  F +                 GR+MT  +G+A+LVPGA VD  AF+PCGYSMNAI ++SYYTIHVTPE +CSYASFETNNP++SYRSI+NNVLNVFRP+R+VLTM+AD+AGL T+ E+PFD   +  P     A Y RTS+CST VEGDC  ++  ++++
Sbjct:   57 GGYDLSNSLSDLSDSGSEHASDDALAQEAEQ------EEREYTGFFEGPEKTLEVCFKPGVGDQHGCRALTRAQLDQICKRARCTILSRMSNAHLDAYVLSESSLFVYRHKVVVKTCGTTTLLRCIAYLLQHAGRGLGMELEWVGYSRKNFTFPGDQLYPHASFEQELDYLRQHQHLSARLDGSGHVLGPVTGDHWFVYVADKYDRPNFTATDRVINIMMFDLHPDCAAKFVRGDAAAGADGTAVSARAAGRDMTVASGVADLVPGATVDACAFEPCGYSMNAIQFESYYTIHVTPEAACSYASFETNNPYRSYRSIVNNVLNVFRPRRFVLTMMADEAGLKTMAESPFDQLSLPAPAFGGAAAYARTSMCSTKVEGDCCLLLANYNLK 439          
BLAST of mRNA_C-linearis_contig10.587.1 vs. uniprot
Match: W7T3C1_9STRA (Adenosylmethionine decarboxylase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T3C1_9STRA)

HSP 1 Score: 431 bits (1107), Expect = 4.070e-141
Identity = 218/357 (61.06%), Postives = 266/357 (74.51%), Query Frame = 2
Query:  488 GCFEGPEKTLEVCFKPGIGSTAGCRALTRPSLDRMCSRAKCTILHQISNDYLDAYVLSESSLFVYPHKVVMKTCGTTTLLRCVATLLK--AALDEQGLVLEWMGYSRKNFTFPGDQLFPHSSFQQELQYLGAHAHLEKRLDGAGYVLGPVTGDHWFVYVADKCDRPDYTATDRTINMMMFDMHPDTAKYFYKEVCPTGREMTKKTGIAELVPGAVVDDFAFDPCGYSMNAILYDSYYTIHVTPEESCSYASFETNNPFKSYRSIINNVLNVFRPKRWVLTMVADKAGLDTITEN----PFDVEKIDLPLRKAQYIRTSVCSTVVEGDCVCIMGAWDMRDKEKAVPTAEGTGRPRTGS 1540
            GCFEGPEKTLEVCFKPG+G   GCR LTR  LD +C +A+CTIL+Q+SN Y DAYVLSESSLFV+P K+++KTCGTTTLLRC+  LL+  AAL   GL LEW+GYSRKN++FPGDQ FPHSSF QEL YL +H+ L  +L+G+GYVLGPVTGDH++VYVAD+C RP Y   DR +N+MMFDM P+ A  FYKE     +EMT+K+GIA+LVPGA +D FAFDPCGYSMNAI Y +Y TIHVTPE  CSYASFETN P KSY S+INNVL VFRP+R+VLTM+AD+A +  +  N    PF+   + +P   A Y R S  +T+ E D  C MG W +R++      A G G  R G+
Sbjct:  127 GCFEGPEKTLEVCFKPGVGHARGCRELTRRQLDVLCRKARCTILNQMSNAYQDAYVLSESSLFVWPFKMMLKTCGTTTLLRCLPRLLRYTAAL---GLELEWVGYSRKNYSFPGDQAFPHSSFDQELSYLRSHSKLSAKLNGSGYVLGPVTGDHFYVYVADQCVRPSYECHDRVLNIMMFDMDPEAAAVFYKEQSGDAKEMTQKSGIADLVPGASIDAFAFDPCGYSMNAITYGNYATIHVTPEADCSYASFETNTPLKSYDSLINNVLRVFRPRRFVLTMMADQAAVLEMESNKQRLPFERAHVAVPGLGA-YSRASSSTTIFEKDYRCFMGTW-LREQG-----AGGAGAQRKGA 473          
BLAST of mRNA_C-linearis_contig10.587.1 vs. uniprot
Match: A0A7S1UFX8_9STRA (Adenosylmethionine decarboxylase n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UFX8_9STRA)

HSP 1 Score: 419 bits (1076), Expect = 2.000e-137
Identity = 203/351 (57.83%), Postives = 259/351 (73.79%), Query Frame = 2
Query:  437 KLDTQAAGEDGEEREYTGCFEGPEKTLEVCFKPGIGSTAGCRALTRPSLDRMCSRAKCTILHQISNDYLDAYVLSESSLFVYPHKVVMKTCGTTTLLRCVATLLKAALDEQGLVLEWMGYSRKNFTFPGDQLFPHSSFQQELQYLGAHAHLEKRLDGAGYVLGPVTGDHWFVYVADKCDRPDYTATDRTINMMMFDMHPDTAKYFYKEVCPTGREMTKKTGIAELVPGAVVDDFAFDPCGYSMNAILYDSYYTIHVTPEESCSYASFETNNPFKSYRSIINNVLNVFRPKRWVLTMVADKAGLDTITENPFDVEKIDLPLRKAQYI-RTSVCSTVVEGDCVCIMGAWDMRD 1486
            +LD     ++  +REY G FEGPEKTLEVCFKPG+G   GCR L R SL+R+ +RAKCTI+  +SN +LDAYVLSESSLFVYP+KVV+KTCG TTLLRC+  LL+ A    G  LEW+GYSRKNF +P  QLFPH+SF  E+ YL  H+    +L G+ ++LGP+TGDHWFVYVADK +RP    +DRTIN+MMFDMH D A+ FYK+  PT  E T  +GI  L+PGA +D   F+PCGYSMNAI +DSY TIH+TPE +CSYASFETN   +SY ++I NVL +FRP+R+VLTM AD+AGL +++E+PF+ + + LP R   YI R +  +T VE D VC MG W++ +
Sbjct:   64 ELDEDFPDDESVDREYDGTFEGPEKTLEVCFKPGVGLEGGCRNLPRASLNRILTRAKCTIMSIVSNSHLDAYVLSESSLFVYPYKVVLKTCGATTLLRCLPYLLREARRYCGCELEWVGYSRKNFAYPTQQLFPHTSFNDEMGYLQKHSKYYDKLSGSAHILGPLTGDHWFVYVADKSERPMEMESDRTINIMMFDMHEDAAQMFYKDKYPTAEEQTMASGINMLMPGAQIDAQCFEPCGYSMNAIQHDSYSTIHITPESACSYASFETNTKLRSYTALIRNVLQLFRPRRFVLTMFADEAGLASLSEDPFEDKALLLP-RFGMYIQRNAASNTTVEVDTVCRMGCWELSE 413          
BLAST of mRNA_C-linearis_contig10.587.1 vs. uniprot
Match: A0A8J2WZ11_9STRA (Adenosylmethionine decarboxylase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WZ11_9STRA)

HSP 1 Score: 394 bits (1011), Expect = 2.440e-128
Identity = 198/360 (55.00%), Postives = 252/360 (70.00%), Query Frame = 2
Query:  488 GCFEGPEKTLEVCFKPGIGSTAGCRALTRPSLDRMCSRAKCTILHQISNDYLDAYVLSESSLFVYPHKVVMKTCGTTTLLRCVATLLKAALDEQGLVLEWMGYSRKNFTFPGDQLFPHSSFQQELQYLGAH-AHLEKRLDGAGYVLGPVTGDHWFVYVADKCDRPDYTATDRTINMMMFDMHPDTAKYFY------KEVCPTGREMTKKTGIAELVPGAVVDDFAFDPCGYSMNAILYDSYYTIHVTPEESCSYASFETNNPFKSYRSIINNVLNVFRPKRWVLTMVADKAGLDTITENPFDVEKIDLPLRKAQYIRTSVCSTVVEGDCVCIMGAWDM-RDKEKAVPTAEGTGRPRTGSL 1543
            G FEGPEKTLEVCF PG G   GCR LTR  LD +   A+CTIL ++SN +LDAYVLSESSLFVY HKVV+KTCG TTLLRC+  L++ A    GL LEW+GYSRKN+ FP DQ+ PH  F+ EL+YL AH    EK  DG+GYVLGP+TGDHWFVYV+D+C+RP  +AT+RT+N+MMFD+  D  ++F+       ++   GR MT+++G+  L+PG V DD AF PCGYS+NA+ ++SY T+HVTPE SCSYASFETN   KSY S++ NVL VFRPKR VLT+ AD+AGL  +  +     +  L +  + Y+R ++ ST VE DCVC+M  + + R       T     RPR GSL
Sbjct:   28 GAFEGPEKTLEVCFLPGAGDIRGCRGLTRAQLDCILEEARCTILSRMSNAHLDAYVLSESSLFVYAHKVVVKTCGRTTLLRCLRRLVQEATSTLGLQLEWVGYSRKNYCFPDDQVAPHGCFEDELRYLKAHQGDAEKVFDGSGYVLGPLTGDHWFVYVSDQCERPASSATERTVNVMMFDLPEDVRRHFHLQGDEDSDLRAAGRAMTQRSGLKALIPGKV-DDHAFAPCGYSLNALSFESYTTVHVTPEASCSYASFETNTALKSYGSLVKNVLAVFRPKRVVLTLFADEAGLRELPRSALFDGQPRLDVSGSTYVRENLSSTQVEHDCVCMMANYTLKRPGASRTATPSSPLRPRIGSL 386          
BLAST of mRNA_C-linearis_contig10.587.1 vs. uniprot
Match: A0A812UPE8_SYMMI (Adenosylmethionine decarboxylase n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812UPE8_SYMMI)

HSP 1 Score: 379 bits (974), Expect = 3.350e-122
Identity = 198/372 (53.23%), Postives = 249/372 (66.94%), Query Frame = 2
Query:  485 TGCFEGPEKTLEVCFKPGIGSTAGCRALTRPSLDRMCSRAKCTILHQISNDYLDAYVLSESSLFVYPHKVVMKTCGTTTLLRCVATLLKAALDEQGLVLEWMGYSRKNFTFPGDQLFPHSSFQQELQYLGAHAHLEKRLDGAGYVLGPVTGDHWFVYVADKCDR-----------PDYTAT------------DRTINMMMFDMHPDTAKYFY-KEVCPTGREMTKKTGIAELVPGAVVDDFAFDPCGYSMNAILYDSYYTIHVTPEESCSYASFETNNPFKSYRSIINNVLNVFRPKRWVLTMVADKAGLDTITENPFDVEKIDLPLRKAQYIRTSVCSTVVEGDCVCIMGAWDMRDKEKAVPTAEGTGRP 1528
            T CFEGPEKT+EVCF PG+GS  G R LTR  LD +C  AKCTIL +IS+ Y+DAYVLSESSLFVY ++ +MKTCGTTTLLRC+ TL++ A +E G+ L W+GYSRKN   P  Q +PHS+F+ E+ YL +H  L+ RL+G+G++LGPVTGDHWFVYVAD  +            P   AT            + T+NMMMFD++ + A  FY ++ C TG +MT K GI ELVPGA VD  +F PCGYSMNAIL+D+Y TIHVTPE  CSYAS+ETN    SY S+I NVLNVF+P+R+VLTM AD++ L  + E P  + +I LP     Y R S  ST VE D  C+MG + M      VP ++    P
Sbjct:   41 TDCFEGPEKTMEVCFMPGVGSPGGLRDLTRGQLDLLCEEAKCTILSKISSSYIDAYVLSESSLFVYKYRYIMKTCGTTTLLRCLDTLIRYA-EELGMSLWWVGYSRKNLNNPSAQHWPHSNFEDEVTYLTSHPVLQARLNGSGHILGPVTGDHWFVYVADLSEEYRSAWGGLRRSPPLLATCANTPNTDTVMDNITMNMMMFDLNREVAGVFYQRDDCKTGAQMTMKAGIHELVPGASVDACSFTPCGYSMNAILHDAYSTIHVTPEPQCSYASYETNTTLPSYASLIRNVLNVFKPQRFVLTMFADESALRFLKEFPTGLRRIALPW--GTYNRLSTSSTTVEADLSCMMGCFVMDGASTTVPPSQAQAAP 409          
BLAST of mRNA_C-linearis_contig10.587.1 vs. uniprot
Match: A0A1Z5JP29_FISSO (Adenosylmethionine decarboxylase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JP29_FISSO)

HSP 1 Score: 376 bits (965), Expect = 1.030e-120
Identity = 199/385 (51.69%), Postives = 247/385 (64.16%), Query Frame = 2
Query:  467 GEEREYTGCFEGPEKTLEVCFK------------------PGIGSTAGCRALTRPSLDRMCSRAKCTILHQISNDYLDAYVLSESSLFVYPHKVVMKTCGTTTLLRCVATLLKAALDEQGLVLEWMGYSRKNFTFPGDQLFPHSSFQQELQYLGAHAHLEKRLDGAGYVLGPVTGDHWFVYVADKCDRPDYTA--TDRTINMMMFDMHPDTAKYFY--------------KEVCPTGREMTKKTGIAELVPGAVVDDFAFDPCGYSMNAILYDSYYTIHVTPEESCSYASFETNNPFKSYRSIINNVLNVFRPKRWVLTMVADKAGLDTITENPF----DVEKIDLPLRKA----QYIRTSVCSTVVEGDCVCIMGAWDMRDKEK 1495
            G+ER+YTG FEGPEKTLEV F+                      +  G R LTR  LDR+C+RA+CTIL  ISN YLDAYVLSESSLFVYP+ +V+KTCGTTTLLRC+ATL+       GL ++W+GYSRKNF FPGDQ FPH SF QEL YL +H +L +RLDG+GY LGPVTGDHWFV+VAD+  R       TDR +N+MMFD+    A+ FY               ++       TK  GI  L PGA++D  AF+PCGYSMNA+L+ SY T+H+TPE   SYASFETN    SY+S+I+NV+  FRPKR+V+T++AD+ GL  ITENP        KI +P  K+     Y R S  S  VE DC C+MG W + +  K
Sbjct:   40 GQERDYTGMFEGPEKTLEVVFRRVSDEYTDASTGDLTPMQTPPNTKLGLRNLTREQLDRICARARCTILSCISNQYLDAYVLSESSLFVYPYMLVLKTCGTTTLLRCIATLIDLGRT-LGLEIDWVGYSRKNFNFPGDQSFPHQSFHQELDYLYSHRNLCERLDGSGYTLGPVTGDHWFVFVADQTLRSKALDCDTDRVLNIMMFDIDEQVAELFYYNRYQESDDEPIAENDMKRIAAAQTKAAGIDSLCPGALIDSAAFEPCGYSMNAVLFRSYSTMHITPETGSSYASFETNQKVSSYKSLISNVIRTFRPKRFVMTLMADEGGLQQITENPLTDNASAAKIVVPFEKSGMKCSYKRASTASIKVEEDCCCLMGNWVLEEPSK 423          
BLAST of mRNA_C-linearis_contig10.587.1 vs. uniprot
Match: A0A7S2A5D5_TRICV (Adenosylmethionine decarboxylase n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A5D5_TRICV)

HSP 1 Score: 374 bits (961), Expect = 1.040e-119
Identity = 203/410 (49.51%), Postives = 256/410 (62.44%), Query Frame = 2
Query:  467 GEEREYTGCFEGPEKTLEVCFK----PGI------------GSTAGCRALTRPSLDRMCSRAKCTILHQISNDYLDAYVLSESSLFVYPHKVVMKTCGTTTLLRCVATLLKAALDEQGLVLEWMGYSRKNFTFPGDQLFPHSSFQQELQYLGAHAHLEKRLDGAGYVLGPVTGDHWFVYVADKCDRPDYTA--TDRTINMMMFDMHPDTAKYFY------------KEVCPT--GREMTKKTGIAELVPGAVVDDFAFDPCGYSMNAILYDSYYTIHVTPEESCSYASFETNNPFKSYRSIINNVLNVFRPKRWVLTMVADKAGLDTITENPFD------------------VEKIDLPLRKAQYIRTSVCSTVVEGDCVCIMGAWDMRDKEKAVPTAEGTGRPRTGSLA 1546
            GE REY+G FEGPEKTLEVCF+    P +            G+  G R L+R  LDR+C RA+CTIL ++SN YLDAYVLSESSLFVYP+ +V+KTCGTTTLLRC+A L++    + GL L+W+GYSRKNF FPGDQ FPH SF QEL+YL +H +L +RLDG GY LGPVTGDHWFV+VAD+  R       TDR +N+MMFD+    A  FY            +E C        TK+ GI    PGA++D  AF+PCGYSMNAIL+ SYYT+H+TPE   SYASFETN    SY S+INNV+  FRPKR+V+T++AD+ GL  +  NP                      +   P +K  Y RT++ S  VE DC C+MG W + +  K +       RPR  S++
Sbjct:   63 GEIREYSGVFEGPEKTLEVCFRSAATPDVDVEGEVMTAAVPGALVGLRRLSRVDLDRVCRRARCTILSKVSNQYLDAYVLSESSLFVYPYMLVLKTCGTTTLLRCLAVLIELG-RKVGLELDWVGYSRKNFNFPGDQAFPHQSFHQELEYLYSHRNLCERLDGNGYTLGPVTGDHWFVFVADQTIRSKLCDLDTDRVLNIMMFDIDESVASIFYYDEHGGRLLGETEEECAERISAAQTKQAGIDSFCPGALIDPRAFEPCGYSMNAILFRSYYTMHITPEAGSSYASFETNQRVDSYASLINNVVRTFRPKRFVMTLMADEGGLKQMKANPLTGRIVIPPVKQGNGKAASPTNQASPPGKKMHYKRTTLASIKVEEDCCCMMGNWVLEESPKDLRV----DRPRGMSMS 467          
BLAST of mRNA_C-linearis_contig10.587.1 vs. uniprot
Match: A0A6U3QBX3_9STRA (Adenosylmethionine decarboxylase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3QBX3_9STRA)

HSP 1 Score: 370 bits (949), Expect = 2.810e-118
Identity = 207/409 (50.61%), Postives = 255/409 (62.35%), Query Frame = 2
Query:  386 PVSDLSDSSGGEDDMLQKLDTQAAGEDGE-EREYTGCFEGPEKTLEVCFKP--------------GIGSTAGCRALTRPSLDRMCSRAKCTILHQISNDYLDAYVLSESSLFVYPHKVVMKTCGTTTLLRCVATLLKAALDEQGLVLEWMGYSRKNFTFPGDQLFPHSSFQQELQYLGAHAHLEKRLDGAGYVLGPVTGDHWFVYVADKCDRPDYTA--TDRTINMMMFDMHPDTAKYFYKE---------------VCPTGREMTKKTGIAELVPGAVVDDFAFDPCGYSMNAILYDSYYTIHVTPEESCSYASFETNNPFKSYRSIINNVLNVFRPKRWVLTMVADKAGLDTITENPF----DVEKIDLPL------RKAQYIRTSVCSTVVEGDCVCIMGAWDMRD 1486
            P  D+SD +  +      L  +A    GE +REYTG FEGPEKTLEVCF+                 G   G R L+R  LDR+C RA+CTIL  ISN YLDAYVLSESSLFVYP+ +V+KTCGTTTLLRCVATL++ A    GL ++W+GYSRKNF FP DQ+FPH SF QEL+YL +H +L +RLDG GY LGPVT DHWFV+VAD+  R   T   TDR +N+MMFD+ P  A  FY +               V       TK  GI  L  G  +D  AF+PCGYSMNAIL+ SY TIH+TPEE  SYASFETN   +SY S+INNV+  F+PKR+V+T++AD+ GL  +  NP     +  KI +         K QY R S+ S  VE DC C+MG W + +
Sbjct:   18 PPEDVSDDAIVQPQQPPDLSHEADDHSGEMDREYTGFFEGPEKTLEVCFRAIDAGNDVCIPPPPQPPGRKLGLRRLSRTDLDRVCRRARCTILSSISNQYLDAYVLSESSLFVYPYMIVLKTCGTTTLLRCVATLIELARG-LGLEVDWLGYSRKNFNFPCDQIFPHGSFHQELEYLYSHRNLCERLDGNGYTLGPVTSDHWFVFVADQTIRSKNTELDTDRVLNIMMFDIDPTVADLFYYDRYEAKAHPEESEDDAVHRISTAQTKAAGIDSLCAGYKIDPRAFEPCGYSMNAILFRSYSTIHITPEEGSSYASFETNQKVESYSSLINNVVRTFKPKRFVMTLMADELGLQQMKTNPLTGSSESSKIIVGTGKTDSSNKMQYKRRSLASIKVEEDCCCMMGNWVLEE 425          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.587.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8P6_ECTSI9.160e-26087.59Adenosylmethionine decarboxylase n=2 Tax=Ectocarpu... [more]
A0A835YIR2_9STRA8.370e-16665.52Adenosylmethionine decarboxylase n=1 Tax=Tribonema... [more]
A0A835ZL65_9STRA9.210e-16462.98Adenosylmethionine decarboxylase n=1 Tax=Tribonema... [more]
W7T3C1_9STRA4.070e-14161.06Adenosylmethionine decarboxylase n=2 Tax=Monodopsi... [more]
A0A7S1UFX8_9STRA2.000e-13757.83Adenosylmethionine decarboxylase n=2 Tax=Phaeomona... [more]
A0A8J2WZ11_9STRA2.440e-12855.00Adenosylmethionine decarboxylase n=1 Tax=Pelagomon... [more]
A0A812UPE8_SYMMI3.350e-12253.23Adenosylmethionine decarboxylase n=1 Tax=Symbiodin... [more]
A0A1Z5JP29_FISSO1.030e-12051.69Adenosylmethionine decarboxylase n=2 Tax=Fistulife... [more]
A0A7S2A5D5_TRICV1.040e-11949.51Adenosylmethionine decarboxylase n=1 Tax=Trieres c... [more]
A0A6U3QBX3_9STRA2.810e-11850.61Adenosylmethionine decarboxylase n=1 Tax=Ditylum b... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:2705428..2711906 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score732.3
Seed ortholog evalue1.4e-208
Seed eggNOG ortholog2880.D7G8P6
Preferred nameAMD1
KEGG rclassRC00299
KEGG koko:K01581,ko:K01611,ko:K15203
KEGG ReactionR00178,R00670
KEGG Pathwayko00270,ko00330,ko00480,ko01100,ko01110,ko01130,map00270,map00330,map00480,map01100,map01110,map01130
KEGG ModuleM00034,M00133,M00134
Hectar predicted targeting categoryother localisation
GOsGO:0001701,GO:0003674,GO:0003824,GO:0004014,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006082,GO:0006575,GO:0006576,GO:0006595,GO:0006596,GO:0006597,GO:0006732,GO:0006766,GO:0006767,GO:0006790,GO:0006807,GO:0006950,GO:0006952,GO:0007275,GO:0008150,GO:0008152,GO:0008215,GO:0008216,GO:0008295,GO:0009058,GO:0009108,GO:0009110,GO:0009308,GO:0009309,GO:0009605,GO:0009607,GO:0009617,GO:0009790,GO:0009792,GO:0009892,GO:0009987,GO:0010468,GO:0010605,GO:0010629,GO:0015939,GO:0015940,GO:0016032,GO:0016053,GO:0016458,GO:0016829,GO:0016830,GO:0016831,GO:0017144,GO:0019058,GO:0019079,GO:0019222,GO:0019752,GO:0019808,GO:0019810,GO:0032501,GO:0032502,GO:0032787,GO:0034641,GO:0042364,GO:0042398,GO:0042401,GO:0042742,GO:0043009,GO:0043167,GO:0043169,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044106,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044403,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046500,GO:0048519,GO:0048731,GO:0048856,GO:0050789,GO:0050829,GO:0050896,GO:0051186,GO:0051188,GO:0051704,GO:0051707,GO:0060255,GO:0065007,GO:0070405,GO:0071704,GO:0072330,GO:0097164,GO:0098542,GO:0099402,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.S-adenosylmethioninamine biosynthetic process
EggNOG OGsKOG0788@1,KOG0788@2759
Ec32 ortholog descriptionS-Adenosylmethionine decarboxylase
Ec32 orthologEc-22_002520.1
EC4.1.1.17,4.1.1.50
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03021
Exons10
Model size2040
Cds size1335
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.587.1prot_C-linearis_contig10.587.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 2705919..2711308 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927343.684615-UTR-C-linearis_contig10:2705427..27059181622927343.684615-UTR-C-linearis_contig10:2705427..2705918Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2705428..2705918 -
1690879640.0833895-UTR-C-linearis_contig10:2705427..27059181690879640.0833895-UTR-C-linearis_contig10:2705427..2705918Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2705428..2705918 -
1622927343.8210976-UTR-C-linearis_contig10:2711308..27113781622927343.8210976-UTR-C-linearis_contig10:2711308..2711378Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2711309..2711378 -
1690879640.1768095-UTR-C-linearis_contig10:2711308..27113781690879640.1768095-UTR-C-linearis_contig10:2711308..2711378Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2711309..2711378 -
1622927343.831895-UTR-C-linearis_contig10:2711762..27119061622927343.831895-UTR-C-linearis_contig10:2711762..2711906Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2711763..2711906 -
1690879640.1841366-UTR-C-linearis_contig10:2711762..27119061690879640.1841366-UTR-C-linearis_contig10:2711762..2711906Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2711763..2711906 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927343.6942477-CDS-C-linearis_contig10:2705918..27060861622927343.6942477-CDS-C-linearis_contig10:2705918..2706086Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2705919..2706086 -
1690879640.0942411-CDS-C-linearis_contig10:2705918..27060861690879640.0942411-CDS-C-linearis_contig10:2705918..2706086Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2705919..2706086 -
1622927343.7079759-CDS-C-linearis_contig10:2706340..27064551622927343.7079759-CDS-C-linearis_contig10:2706340..2706455Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2706341..2706455 -
1690879640.1022837-CDS-C-linearis_contig10:2706340..27064551690879640.1022837-CDS-C-linearis_contig10:2706340..2706455Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2706341..2706455 -
1622927343.749131-CDS-C-linearis_contig10:2706798..27069091622927343.749131-CDS-C-linearis_contig10:2706798..2706909Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2706799..2706909 -
1690879640.1110394-CDS-C-linearis_contig10:2706798..27069091690879640.1110394-CDS-C-linearis_contig10:2706798..2706909Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2706799..2706909 -
1622927343.7655818-CDS-C-linearis_contig10:2707203..27073551622927343.7655818-CDS-C-linearis_contig10:2707203..2707355Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2707204..2707355 -
1690879640.119202-CDS-C-linearis_contig10:2707203..27073551690879640.119202-CDS-C-linearis_contig10:2707203..2707355Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2707204..2707355 -
1622927343.7751565-CDS-C-linearis_contig10:2707477..27075691622927343.7751565-CDS-C-linearis_contig10:2707477..2707569Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2707478..2707569 -
1690879640.1306467-CDS-C-linearis_contig10:2707477..27075691690879640.1306467-CDS-C-linearis_contig10:2707477..2707569Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2707478..2707569 -
1622927343.783838-CDS-C-linearis_contig10:2708503..27087231622927343.783838-CDS-C-linearis_contig10:2708503..2708723Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2708504..2708723 -
1690879640.1390836-CDS-C-linearis_contig10:2708503..27087231690879640.1390836-CDS-C-linearis_contig10:2708503..2708723Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2708504..2708723 -
1622927343.79216-CDS-C-linearis_contig10:2708990..27091611622927343.79216-CDS-C-linearis_contig10:2708990..2709161Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2708991..2709161 -
1690879640.1472049-CDS-C-linearis_contig10:2708990..27091611690879640.1472049-CDS-C-linearis_contig10:2708990..2709161Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2708991..2709161 -
1622927343.8038833-CDS-C-linearis_contig10:2710654..27107351622927343.8038833-CDS-C-linearis_contig10:2710654..2710735Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2710655..2710735 -
1690879640.1553957-CDS-C-linearis_contig10:2710654..27107351690879640.1553957-CDS-C-linearis_contig10:2710654..2710735Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2710655..2710735 -
1622927343.812378-CDS-C-linearis_contig10:2711083..27113081622927343.812378-CDS-C-linearis_contig10:2711083..2711308Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2711084..2711308 -
1690879640.1688964-CDS-C-linearis_contig10:2711083..27113081690879640.1688964-CDS-C-linearis_contig10:2711083..2711308Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2711084..2711308 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.587.1

>prot_C-linearis_contig10.587.1 ID=prot_C-linearis_contig10.587.1|Name=mRNA_C-linearis_contig10.587.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=445bp
MALDVATVSGEPTGIRFSTLEPAAASASGTGTAGPGTSQGRERGADLDVS
GGSSSTRPVSDLSDSSGGEDDMLQKLDTQAAGEDGEEREYTGCFEGPEKT
LEVCFKPGIGSTAGCRALTRPSLDRMCSRAKCTILHQISNDYLDAYVLSE
SSLFVYPHKVVMKTCGTTTLLRCVATLLKAALDEQGLVLEWMGYSRKNFT
FPGDQLFPHSSFQQELQYLGAHAHLEKRLDGAGYVLGPVTGDHWFVYVAD
KCDRPDYTATDRTINMMMFDMHPDTAKYFYKEVCPTGREMTKKTGIAELV
PGAVVDDFAFDPCGYSMNAILYDSYYTIHVTPEESCSYASFETNNPFKSY
RSIINNVLNVFRPKRWVLTMVADKAGLDTITENPFDVEKIDLPLRKAQYI
RTSVCSTVVEGDCVCIMGAWDMRDKEKAVPTAEGTGRPRTGSLA*
back to top

mRNA from alignment at C-linearis_contig10:2705428..2711906-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.587.1 ID=mRNA_C-linearis_contig10.587.1|Name=mRNA_C-linearis_contig10.587.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6479bp|location=Sequence derived from alignment at C-linearis_contig10:2705428..2711906- (Chordaria linearis ClinC8C monoicous)
ACTCGGTCCACATCCCTTTGCCGGCTCAAGATTCCAGGATTCCATCAAAA GTTCATGCTCACGCTGACTAGCTTATTCGAGTTGGAGGTGGACGATATCA TCTCTGGAATGCCAGGTGGTGCCTTCGCTTCGAACTTCTTCGTGGTGAGG GGAGATCACAATCATTTTGTAGGTTTTTGTTTGAGGCAGGGCATCAACCA ACATCCGCCAAGCCCGTAGCCTCTCATCTCTTTCAATCTGTAGCGGGCTT GGCGTGACGATTGGCCGTACTTCTACCGTGGTAGTTGGTGACCTCCTCTC TTTTGTGTAGTCTGGGTTCAGTCTCATCTCCCGACCCACTTCGCGAGCCC CTTGATCGTACATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTG TGTGTGTGTGTGTGGTACATGTACAAGTATGATATGTGCAAATGCAATCC ACGCACGTCACTGGAAATTCGAAATTCGACCTCCCATGTCTCCCTCCCCC TCTCCGCTGCGTCGGCGTTGTTTGCCAGCCCCTCGAACCAAGCTGACAGG GCTCGGGAACGTTGGTACCAGATTAACGCATCTACTTTGGTAGGGAAGAT GGCTCTGGATGTCGCGACGGTCTCCGGAGAGCCCACGGGCATACGCTTTT CGACCCTTGAACCAGCCGCAGCCTCTGCCTCCGGCACGGGCACGGCAGGA CCAGGCACAAGCCAAGGTAGGGAGAGGGGAGCTGACCTCGACGTGTCTGG AGGAAGCTCTTCTACGCGACCAGTGTCAGATCTGAGTGATTCCTCTGGCG GGGAAGACGACATGCTCCAAAAGGTGAAAACCTGACGCTGCCTATGTCTC CTTAGCCACAATGGTGGGTGTTGCCACCTCCCTTCTTTGCACGCATTCTC TTTGCACGCATTCCCTTTACACGCACTCATGTTTGCTTGCGCTGCTGTAT TATACGGTGACGCATTGACCTTGATTTGAAAATGCGTCTAGCAACTGTTT CCCTTCAGTACCGACGATTTCGTACACTTCCTGCTTTTAGGGATCAACAA ACTCCTGTTCATATCGGAACGGCGAAACAGGCACCATCATCAAAAATGTA CATTACATACTTCGTATATGTGTTGCCTCTGGCCTAATCTGCGATCCTCC TCGCCACTTATCCCTCTTCAGTTGGACACGCAAGCCGCTGGTGAAGATGG GGAAGAGAGGGAATACACAGGTTGCTTCGAGGGGCCGGAAAAAACGCTAG AGGTGAGATGTGCGGCCGTTCGAACCTGATCGGTTTTTCATGAGACACAA ACGCGACTGCGGTTTCACCAGTATCCGCAACGTGTGACGTTTGCGGCGGC GATGGCTTACGAGCTAGGTACTCCGCTGCAGCGGCTGCTATCGTATCCCT AGATAACCATTAACAGTATTGGGCCCTATATAGTGCCCGGTATATAGTGC AGGTTGGACACACACACACACACACACACACGGACAGACGAACAGCGGAC AGACGCAACGCAGAAACGAGAGTACACGTGCTACTGTAGACCCGAAGAAC CCGGAAAGCCGCTCGCGGGGGAAGCGGTGAGCGCGATTCAGGGGTGGGCT ACCATCGAGGACGACGATGAGGTGGTAGAGGCTCTTCGACTGGACGCAGT GCACGAAATGGCGGCACTGCTAGCTGGAACGCGCGTATCTTCCGGCTGCG AGGAGGAGGACGAAGCGGAGGACGGCGGTGGCGGTCAAAACACGGGGCGC GAGCGCTGTGCTCCACCGTCTTATGATGAGCTGTCGTCTCACTTCGGCGT CCTGGAAGCGGCAGCAGAGGAGAGTGGCAACGGAGACGCGGCGTTCCACC TGACGATAGCAAAGATGGCGATGATCGCAGCGCATTCCGCTAAGCGGGTG CGCCAGGCAGACATCAAAGAGTTTGTCGAGACGTAGTGAGGGCGGGGGGT ACGTGGTTGTTTTGTTTTCTTGCAGTGAGCTTCCTGTGTGCTCTTCTTGT TTTTTTTTGTTTTTTTTCTTGCAACATCGCAGCGGGGGCGCCGGGCAGGC ATGAGGGAGTTTGTCACGACGTAGTGAGGGCGGGGGGTGCATGGTTGTTT GTTTTTCTTGCGGTGCGCTTCCTGTCGTGCTTGTCTTGGTCTGTGTGTGT GTTTTTTCTTGCAAAATCGAAGCGGGTGCGCCAGGCAGACATGAGAGTTT TGTCACCACGTAATGAGGGCGGGGGGCAGCAGTACATGGTTGCTCGTTTT TTTGCAGTGCGCTTTCTGTCGTGTTTCTTTTTCTGTTTTGTCTTTTTGTA TCTTGCAACATCGAAGGAAGGCAACGAGGACTGAGATTTAGCTTCGTCCA CTATTAATACATAATCTCGGTCCATTACGTACTCTGTTGGCCCCGCAAAG CGTGAATGCCTCACCATGAAGTCAAAGAGTGCCTCAATAGTGCAGGACCT GCACTATTGAGGCACTCTTATGAGTACTGCAGGTGCCCGCTTATAGTGCA GGTAAAGTCTCTGGACAGACCTCTGCACTATATAGGGCCCAGTACTGTAT ATAGGGTCTTTTTTTGTTTCCGGAACGGCCACCACGGCCCCTACGAAGTG TCCACCCGTACGACCATGAATCCATAAATTTACTGCTGTGTGTGGCGGGT TTACTTTACCACTATTTAAACAGTCTGAACGCAAAGGCTTTCCGTTGAGA AAAAACATCGAGTAGAACTTATTGTTGTGGCAATGTCTCGCGCAGGTGTG CTTCAAACCAGGCATCGGAAGCACCGCCGGCTGCCGAGCCTTGACCAGGC CAAGCTTGGACCGCATGTGTTCTCGCGCGAAGTGCACCATTTTGCACCAA ATATCCAACGATTACCTGGACGCCTACGTTCTATCGGAGAGCAGCCTCTT CGTGTACCCCCACAAGGTTAGTGCATCGAGCCACAGACAACAAGCACGCA AAGCACGGAACACACCTGGCCGAAGATGACGCCAGACAGGCACCGGCACC GGCCGTGTCATTAGATTCATCCATACGTTCGTCGTTGGACATGATCATCT GTCACCAACGCTTTCTGTTAATTTGGTGTAGGGCGCAGAGAGGGCAACAA AAGTGCCAGGAAGACTGCGCGATAGATTCGCGTGGCATTGACCCAGTGTT CCACGGCGGTATTCTGACACATTCTTTACACAGGTGGTCATGAAGACATG TGGCACGACGACACTCTTGCGGTGCGTTGCAACGCTTTTGAAAGCGGCGC TCGATGAGCAAGGCCTTGTCCTGGAGTGGATGGGCTACTCTCGCAAGAAC TTCACGTTCCCCGGCGACCAGCTCTTCCCACACTCCAGTTTCCAGCAAGA GCTGCAGTATCTCGGGGCGCACGCTCACCTCGAGAAACGGCTTGACGGCG CAGGTATGTATGTACATGTGCCCTCGAGTTCGAAACAGAAGTCCAAGTCT AGGAGACCTGACTTGAAGTCAGCAGGTGGTAGGAGGCATGTGCAGAGCGA ACAAAGTAGACAGACGAACAGAGCGATGGGGGTGAACCTGTAACTGTCAG GGAGGTGGTCGAGCGAGCTAGTGCGGAGGAGGGAATCCGGCCCGAAGGTT GATTTCGCTGAATCTGCTCTTAGTTTCGCTAACCCATATTCTGCTGAACT TCGTGGCCGGTCGCCTAAGTGGTATAGTGGTAACCTCGAAACCAGATAGC AGCAAAGTCGTGAGGTTCGAATCCCCACCCATGGGGTGAAAATTGCAAAT TTGCGAGGTAAAAGCGATAACATATGATAGCTGAAAAGCTCGTCAGTACC ACACACTTCGACGTTACCGTTGACGAGGGAAAGGGACGGCTGAACCCTTC TCGCGATAAAAATGAAGGCACGCACCGCAGGAGGAAGGTGGGGCAAAAAA GAAACAGAAAAAGAAGAACAAAGCCCCAGTGTTTACCCCCTCCTGTGTAA CCCCGGTTGGTTTCTAGGTGTACGGAAAAATACACTGAACAAGTGTAGTA CTCTAAATACACCGCAACGTGTAGTACACGTCTCGCCTTGATCAGAAAGG GACTGTCGCCAAAATAAATGGGGCGAAAGCACATACACACACACACACAC ACACACTTCGTGGGGATCATCGGGAGAGTTTGCGGCGGAGGACGTCCGTG TTGGTGCCGCAGCTGCACCTACATATGTTTATGTTTCGTTGTGCGCGGAC TTGCGTATGTAGTGCCGGCCGGACCGTTGTGCAATACGGCCTGCAAAGTA GATCCAACTGATTTTGCAGGATGCATGGCACATCTTGGAGTAAGGTAGTA AACCTTATCGTGTGTCCGACCCGGCCTGTGGTCGCAGGTTATGTTCTGGG CCCCGTGACGGGAGACCACTGGTTCGTCTACGTTGCGGACAAGTGCGACC GCCCAGACTACACTGCAACAGACCGGACGGTGAGGTCGATAGAGAGCACG AACGTCTTGATAAAGTAGTATTTATGTGGCACGAGTACAAACCTGCCTTC ATCAGAACTGGCCGAATTAACCACCGTCTTGCCGGTGTTTTGCCCCATCA GATCAACATGATGATGTTCGACATGCATCCTGATACGGCGAAGTATTTCT ACAAGGAGGTGTGCCCGACTGGTCGAGAGATGACAAAGAAGACTGGAATC GCCGAGCTTGTGCCGGGAGCCGTCGTGGACGACTTCGCGTTCGACCCGTG CGGGTGAGTGAGTATATGTTGCCCGCTTGTTTGTGAAGAAGTACTGCGGA GAGCTAGGGTACATCAGCTGCTTCCCGTGCCGTTTTTTTTGCGGATAAGC TGCCAGGAAAACGTGAGCCAGGTCCTCTCTTTTTTTTTAAAGAGATGGAG GTGGCGACGACCAAATATTGATGGTGTTTTTCGCTAGAGATCTGTCCGAG TATCGGGGTGTTGCGTGCACGGATGAGGGTTGGGGTTTTCCGTATTTCCC GACATGAGTCCTCGACGCCAAGCAACCGAATTTTCGTCTCCGCGCAGGTA TTCGATGAACGCCATTTTGTACGACTCGTACTATACGATCCACGTCACTC CAGAGGAATCGTGCAGCTACGCAAGCTTCGAGACGAACAATCCGTTCAAG TCTTACAGGTGCGTGTACGGTGTCGCTCAAACATAGAAGTATACGACTAG CACCCGGCTTGGTTCGCCGTGTTGCTATTTATAGTACGGACTTGTGGGTG GTGTCATTGGTAGTCATTTCCCCGTCAGGAATGGCGAGGCAATCGTTGGA CTCATTTTATCCCAACTTTTGGAAATATTCTCGCAGTGAGACTACCTTCT ACTCCTACTCCCGCGGCGTGCACACCTCAACGGCAAGAAGAGGAACGGCG TACCTACGACCGTGTGACGCACGTTGTTGAACTATGTCGTTGGTCTGCAA ACAGCAGATCTGAGTCCTCCGTATCTCGCTTTTGCCCCTAAACGTGTGCA GATCAATCATCAACAACGTTCTCAACGTGTTTCGGCCGAAGCGATGGGTG CTCACCATGGTTGCGGACAAGGCGGGGCTAGATACCATCACGGAGAATCC GTTTGACGTGGAAAAGGTGGGTTGTTGTTCTTGGTGATAGTCTTGGAAGT AAAGCCAGGTGTTTGTATGGTCGAATGTTCAGCCCGAGCCCCAACCCGTG TCACGATTTAGGACATCAGTCAGTACTAATGGTATGATGTGTCTGGCGAG CGAATTATTTGGGTGGGTGTATAGTGTGAGAGGGAGAACGAAGCAAAAAA TACTTCTGGTCGAAGGTAACGTGAGCTTGTAGGTTCACTTTTAGCCCGTC CCCGGTTCCAAATTCGGCAGATTGACCTACCCCTCCGCAAGGCCCAGTAC ATCCGCACATCGGTGTGCTCCACTGTGGTGGAAGGGGACTGTGTTTGCAT CATGGGCGCGTGGGATATGAGGGACAAGGAAAAGGCTGTGCCCACCGCCG AAGGCACCGGACGCCCGCGCACGGGCTCTTTGGCGTGAACAAGCAAGGAA TAGTGGCAGCCGGACTTCGGCTGGAATTTGTTGCTGGTTACGCGCAAATT ACCTTTCGTAGTTTTTTGCGTTTTGTATAGGTTCGCCTTGTGTTTTGGTG ACGTGCGGGGCCTTCCGCCCCTCGGAAGGGATTTTTTTTCTGTGACGATG CCGAGTATTGCTTGGCTTGGAATCTGTTGATGGCTCCAGTTTGATGATGG GAAACAGCGCGGTACAGCAGTAGCAGGCGAAAGAAAAGCCGAGGTAGCCA GCGTCGCTCTTGGTTTAGACTATATTCCCGGCGGACTACCGGCACGTTTC CTGTACGAATTGAGTATTGAGTCTCCTACTAGCGTGTTGGAGGGTGAGGG CTAGCCCTCGTCAGAGTCGTAGTTGCGAAACGGCCGTGCCGGCGGTCTTA TCAGCTTCCGTCTGCTGAAAATCTGAAAATGGAATGTAGGCCATTTAAGG CCCTGAAGGGAAACAAAACCAAATGAAAC
back to top

Coding sequence (CDS) from alignment at C-linearis_contig10:2705428..2711906-

>mRNA_C-linearis_contig10.587.1 ID=mRNA_C-linearis_contig10.587.1|Name=mRNA_C-linearis_contig10.587.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2670bp|location=Sequence derived from alignment at C-linearis_contig10:2705428..2711906- (Chordaria linearis ClinC8C monoicous)
ATGGCTCTGGATGTCGCGACGGTCTCCGGAGAGCCCACGGGCATACGCTT
TTCGACCCTTGAACCAGCCGCAGCCTCTGCCTCCGGCACGGGCACGGCAG
GACCAGGCACAAGCCAAGGTAGGGAGAGGGGAGCTGACCTCGACGTGTCT
GGAGGAAGCTCTTCTACGCGACCAGTGTCAGATCTGAGTGATTCCTCTGG
CGGGGAAGACGACATGCTCCAAAAGATGGCTCTGGATGTCGCGACGGTCT
CCGGAGAGCCCACGGGCATACGCTTTTCGACCCTTGAACCAGCCGCAGCC
TCTGCCTCCGGCACGGGCACGGCAGGACCAGGCACAAGCCAAGGTAGGGA
GAGGGGAGCTGACCTCGACGTGTCTGGAGGAAGCTCTTCTACGCGACCAG
TGTCAGATCTGAGTGATTCCTCTGGCGGGGAAGACGACATGCTCCAAAAG
TTGGACACGCAAGCCGCTGGTGAAGATGGGGAAGAGAGGGAATACACAGG
TTGCTTCGAGGGGCCGGAAAAAACGCTAGAGTTGGACACGCAAGCCGCTG
GTGAAGATGGGGAAGAGAGGGAATACACAGGTTGCTTCGAGGGGCCGGAA
AAAACGCTAGAGGTGTGCTTCAAACCAGGCATCGGAAGCACCGCCGGCTG
CCGAGCCTTGACCAGGCCAAGCTTGGACCGCATGTGTTCTCGCGCGAAGT
GCACCATTTTGCACCAAATATCCAACGATTACCTGGACGCCTACGTTCTA
TCGGAGAGCAGCCTCTTCGTGTACCCCCACAAGGTGTGCTTCAAACCAGG
CATCGGAAGCACCGCCGGCTGCCGAGCCTTGACCAGGCCAAGCTTGGACC
GCATGTGTTCTCGCGCGAAGTGCACCATTTTGCACCAAATATCCAACGAT
TACCTGGACGCCTACGTTCTATCGGAGAGCAGCCTCTTCGTGTACCCCCA
CAAGGTGGTCATGAAGACATGTGGCACGACGACACTCTTGCGGTGCGTTG
CAACGCTTTTGAAAGCGGCGCTCGATGAGCAAGGCCTTGTCCTGGAGTGG
ATGGGCTACTCTCGCAAGAACTTCACGTTCCCCGGCGACCAGCTCTTCCC
ACACTCCAGTTTCCAGCAAGAGCTGCAGTATCTCGGGGCGCACGCTCACC
TCGAGAAACGGCTTGACGGCGCAGGTGGTCATGAAGACATGTGGCACGAC
GACACTCTTGCGGTGCGTTGCAACGCTTTTGAAAGCGGCGCTCGATGAGC
AAGGCCTTGTCCTGGAGTGGATGGGCTACTCTCGCAAGAACTTCACGTTC
CCCGGCGACCAGCTCTTCCCACACTCCAGTTTCCAGCAAGAGCTGCAGTA
TCTCGGGGCGCACGCTCACCTCGAGAAACGGCTTGACGGCGCAGGTTATG
TTCTGGGCCCCGTGACGGGAGACCACTGGTTCGTCTACGTTGCGGACAAG
TGCGACCGCCCAGACTACACTGCAACAGACCGGACGGTTATGTTCTGGGC
CCCGTGACGGGAGACCACTGGTTCGTCTACGTTGCGGACAAGTGCGACCG
CCCAGACTACACTGCAACAGACCGGACGATCAACATGATGATGTTCGACA
TGCATCCTGATACGGCGAAGTATTTCTACAAGGAGGTGTGCCCGACTGGT
CGAGAGATGACAAAGAAGACTGGAATCGCCGAGCTTGTGCCGGGAGCCGT
CGTGGACGACTTCGCGTTCGACCCGTGCGGATCAACATGATGATGTTCGA
CATGCATCCTGATACGGCGAAGTATTTCTACAAGGAGGTGTGCCCGACTG
GTCGAGAGATGACAAAGAAGACTGGAATCGCCGAGCTTGTGCCGGGAGCC
GTCGTGGACGACTTCGCGTTCGACCCGTGCGGGTATTCGATGAACGCCAT
TTTGTACGACTCGTACTATACGATCCACGTCACTCCAGAGGAATCGTGCA
GCTACGCAAGCTTCGAGACGAACAATCCGTTCAAGTCTTACAGGTATTCG
ATGAACGCCATTTTGTACGACTCGTACTATACGATCCACGTCACTCCAGA
GGAATCGTGCAGCTACGCAAGCTTCGAGACGAACAATCCGTTCAAGTCTT
ACAGATCAATCATCAACAACGTTCTCAACGTGTTTCGGCCGAAGCGATGG
GTGCTCACCATGGTTGCGGACAAGGCGGGGCTAGATACCATCACGGAGAA
TCCGTTTGACGTGGAAAAGATCAATCATCAACAACGTTCTCAACGTGTTT
CGGCCGAAGCGATGGGTGCTCACCATGGTTGCGGACAAGGCGGGGCTAGA
TACCATCACGGAGAATCCGTTTGACGTGGAAAAGATTGACCTACCCCTCC
GCAAGGCCCAGTACATCCGCACATCGGTGTGCTCCACTGTGGTGGAAGGG
GACTGTGTTTGCATCATGGGCGCGTGGGATATGAGGGACAAGGAAAAGGC
TGTGCCCACCGCCGAAGGCACCGGACGCCCGCGCACGGGCTCTTTGGCGT
GAATTGACCTACCCCTCCGCAAGGCCCAGTACATCCGCACATCGGTGTGC
TCCACTGTGGTGGAAGGGGACTGTGTTTGCATCATGGGCGCGTGGGATAT
GAGGGACAAGGAAAAGGCTGTGCCCACCGCCGAAGGCACCGGACGCCCGC
GCACGGGCTCTTTGGCGTGA
back to top