mRNA_C-linearis_contig10.581.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig10.581.1 vs. uniprot
Match: D7G8M9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8M9_ECTSI) HSP 1 Score: 320 bits (821), Expect = 7.590e-108 Identity = 157/261 (60.15%), Postives = 185/261 (70.88%), Query Frame = 1
Query: 1 MGVGEDEFLIPRRTEFGGAGSSHRMR----------QPQLGLRKLLQPLAIALGIFGVSAGAARYLFPRKKIQPQQQQQQMVQTAGRYGVMGGTSPPTTASCATSAEVVMKGVDLTNYFSQEYGTPAVFGVAEHEASYNGYRFWFASEENKAKFEEEPLAYIPSWGGFCSWGISRENWWNKDTLGPEADPDLWFITDAGRLHFFRSPTPMSKFLMDVPANTLAGDEVWSAWWGGVEPGASDVGPGSPLDTTCFCSAETCVD 753
MG+GEDEFL+P GG+ S +R QP G KL++PL +ALG+FGVS GAARYLFPR+K+QPQ++Q + + V G SP T+ CAT+A+VVM+G DLT YFS E G AV+GV EHEA YNGY+FWF S ENKA FEE P +YIP WGGFCSWGISRE+WWN D LGP ADP+ W ITD G LHFFRS PMSKFL DVP N +AG+++W +WWG VEP A G GSPLDT CFCS ETC D
Sbjct: 1 MGLGEDEFLVPSGPMMGGSSSRESLRSHHQXXXXXXQPP-GPWKLVRPLLVALGVFGVSTGAARYLFPRRKLQPQREQLERL-----VAVRTGESP-VTSECATAAKVVMEGADLTRYFSLELGAAAVYGVEEHEALYNGYKFWFESAENKAMFEESPKSYIPQWGGFCSWGISREDWWNADELGPPADPNQWLITDDGGLHFFRSELPMSKFLGDVPGNIVAGNQIWHSWWGDVEPAAD--GAGSPLDTDCFCSTETCED 252
BLAST of mRNA_C-linearis_contig10.581.1 vs. uniprot
Match: A0A6H5JXZ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXZ9_9PHAE) HSP 1 Score: 146 bits (368), Expect = 2.870e-39 Identity = 74/167 (44.31%), Postives = 100/167 (59.88%), Query Frame = 1
Query: 262 TTASCA-TSAEVVMKGVDLTNYFSQEYGTPAVFGVAEHEASYN-GYRFWFASEENKAKFEEEPLAYIPSWGGFCSWGISRENWWNKDTLGPEADPDLWFITDAGRLHFFRSPTPMSKFLMDVPANTLAGDEVWSAWWGGVEPGASDVGPGSPLDTTCFCSAETCVDG 756
TTA C +++ +KG DL Y S + GT V G+ E Y GY F F++ EN+ +FE +P Y+P+WGGFCS+GIS E+ W D LGP ++PD+W I D RL+ FRS TP KF D G++VW+ W+GG V +P +T CFCS E+C DG
Sbjct: 100 TTAECTGDTSKPAVKGFDLVAYRSLQPGTHGVRGLWEFSVQYGQGYTFLFSTLENQLEFESDPEKYLPAWGGFCSFGISHEDIWGPDVLGPPSNPDIWLIEDD-RLYLFRSETPYDKFKDDKARYIKHGNQVWTEWFGGNPSNEGTVM--TPFNTACFCSEESCADG 263
BLAST of mRNA_C-linearis_contig10.581.1 vs. uniprot
Match: A0A7S2CI31_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CI31_9STRA) HSP 1 Score: 110 bits (275), Expect = 1.200e-25 Identity = 57/167 (34.13%), Postives = 97/167 (58.08%), Query Frame = 1
Query: 250 TSPPTTASCA-TSAEVVMKGVDLTNYFSQEYGTPAVFGVAEHEASYNGYRFWFASEENKAKFEEEPLAYIPSWGGFCSWGISRENWWNKDTLGPEADPDLWFITDAGRLHFFRSPTPMSKFLM-DVPANTLAGDEVWSAWWGGVEPGASDVGPGSPLDTTCFCSAET 744
T P T+ C T+ VM G D+ YF+ + G G E E+++ GY F F + +N F +P +Y+P +GGF ++ IS+++W+ +TLGP+A+P++W IT+ +L+FF TP+ KF ++ A +AG+++W +++ E G L+T CF +T
Sbjct: 73 TLPGQTSECLLTTTGPVMDGYDIVEYFNLKPGADGRKGTEEFESTFGGYTFRFLNNKNMKAFGVDPTSYLPQYGGFDAYQISKDSWYTAETLGPDANPNVWKITND-KLYFFMFDTPLKKFETGNMSARIIAGNQIWRSYFNDTEYG---------LNTGCFWFNKT 229
BLAST of mRNA_C-linearis_contig10.581.1 vs. uniprot
Match: A0A7S3JR48_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JR48_9STRA) HSP 1 Score: 110 bits (274), Expect = 5.040e-25 Identity = 53/132 (40.15%), Postives = 75/132 (56.82%), Query Frame = 1
Query: 283 SAEVVMKGVDLTNYFSQEYGTPAVFGVAEHEASYNGYRFWFASEENKAKFEEEPLAYIPSWGGFCSWGISRENWWNKDTLGPEADPDLWFITDAGRLHFFRSPTPMSKFLM-DVPANTLAGDEVWSAWWGGV 675
SA V++G D+ Y G A G A++ A Y Y F+F + EN+A F P Y+P +GGFCS+GI+ E +W KDTLGP A+ ++W I D L F TP KF+ ++ G+++WS WW V
Sbjct: 143 SAGPVLEGADVVAYRYLNVGANATIGSADYAAKYGEYTFYFENAENRATFLSNPDKYVPKFGGFCSYGITNEFFWTKDTLGPNANKNVWIIYDD-HLFVFMYCTPEHKFVSRNITEEIERGNQIWSTWWNDV 273
BLAST of mRNA_C-linearis_contig10.581.1 vs. uniprot
Match: A0A7S2W6K5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W6K5_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 1.170e-19 Identity = 60/180 (33.33%), Postives = 93/180 (51.67%), Query Frame = 1
Query: 118 AIALGIFGVSAGAARYLFPRKKIQPQQQQQQMVQTAGRYGVMGGTSPPTTASCATSAEVVMKGVDLTNYFSQEYGTPAVFGVAEHEASYNGYRFWFASEENKAKFEEEPLAYIPSWGGFCSWGISRENWWNKDTLGPEADPDLWFITDAGRLHFFRSPTPMSKFLM-DVPANTLAGDEVW 654
A+AL +FG + G Y+ + P Q + ++ + S T + S V+ GVD+ YFS AV G + A Y F+F+++ NKA FE P Y+P +GGFC++GI++ N W D+L +DPD W I D G+L+ F+S + + +F+ DV L G + W
Sbjct: 16 AVALVLFG-TLGTVAYV---RTTSPSQASSNFRGNSDQFAAL---STSVTECTSPSLGPVLSGVDVVGYFSLSTDEQAVQGSPDLVARVGKYDFFFSTQRNKALFEVNPRKYMPQFGGFCAYGITK-NSWTADSLDLPSDPDAWRIID-GKLYLFKSSSYLEEFVAGDVETELLGGYKRW 186
BLAST of mRNA_C-linearis_contig10.581.1 vs. uniprot
Match: A0A7S2V1S8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1S8_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 6.650e-17 Identity = 47/141 (33.33%), Postives = 73/141 (51.77%), Query Frame = 1
Query: 250 TSPPTTASCATSAEVVMKGVDLTNYFSQEYGTPAVFGVAEHEASYNGYRFWFASEENKAKFEEEPLAYIPSWGGFCSWGISRENWWNKDTLGPEADPDLWFITDAGRLHFFRSPTPMSKFL-MDVPANTLAGDEVWSAWWG 669
TSP + + V++G D+ +Y+ P + G +H+A Y GY F F S EN F +P AY+P +GGFC++G++ E +W TL A+P ++ I + G LH FRS + F + V G W+ +G
Sbjct: 24 TSPLGNPNLDPNTGPVLQGYDVVSYYQDNKMGP-MKGSTKHQALYEGYTFLFHSPENMEVFLAKPEAYVPEFGGFCTYGVAEETYWTASTLAAPANPLVYLILE-GHLHVFRSLNVLDWFQKLGVEKGVAEGKVNWAKLYG 162
BLAST of mRNA_C-linearis_contig10.581.1 vs. uniprot
Match: A0A7S2CSE7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CSE7_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 2.500e-15 Identity = 44/139 (31.65%), Postives = 70/139 (50.36%), Query Frame = 1
Query: 295 VMKGVDLTNYFSQEYGTP---------AVFGVAEHEASYNGYRFWFASEENKAKFEEEPLAYIPSWGGFCSWGISRENWWN-----KDTLGPEADPDLWFITDAGRLHFFRSPTPMSKFLMDVPANTLAGDEVWSAWWG 669
V++G+D+ +YF + T A G ++++GY F+F+S EN+A F+E P+ YIP++GGFC++GIS + N DPD + I + G L+ FR F+ N G+ W+ W G
Sbjct: 3 VLEGMDVVSYFDEADNTDFYMAPDDFSATLGQETISSTFDGYSFYFSSTENQALFDENPVKYIPTFGGFCAYGISGYDGMNYLHSESQFWSVPVDPDQYAILE-GDLYLFRGSGAKELFVNKSQTNIKGGESQWTGWVG 140
BLAST of mRNA_C-linearis_contig10.581.1 vs. uniprot
Match: A0A7S4EC29_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EC29_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 2.560e-15 Identity = 38/82 (46.34%), Postives = 57/82 (69.51%), Query Frame = 1
Query: 346 PAVFGVAEHEASYNGYRFWFASEENKAKFEEEPLAYIPSWGGFCSWGISRENWW----NKDTLGPEADPDLWFITDAGRLHF 579
PAV G +E+ ++ G+ ++FA++EN KF E P AY+P++GGFC+WGI+ E WW N + P ADP+ W+I D G+L+F
Sbjct: 463 PAVKGKSEYAVNHGGHVWYFANQENMDKFIESPNAYVPAFGGFCTWGIAYETWWGCVGNGVLVLPPADPNSWYIKD-GKLYF 543
BLAST of mRNA_C-linearis_contig10.581.1 vs. uniprot
Match: A0A8J7JEJ7_9RHOB (YHS domain protein n=3 Tax=Rhodobacterales TaxID=204455 RepID=A0A8J7JEJ7_9RHOB) HSP 1 Score: 77.0 bits (188), Expect = 2.920e-14 Identity = 43/126 (34.13%), Postives = 67/126 (53.17%), Query Frame = 1
Query: 283 SAEVVMKGVDLTNYFSQEYGTPAVFGVAEHEASYNGYRFWFASEENKAKFEEEPLAYIPSWGGFCSWGISRENWWNKDTLGPEADPDLWFITDAGRLHFFRSPTPMSKFLMDVPANTLAGDEVWSA 660
S + + GVD +YF++ G P + G H + G + FAS N+ +FE P AY P +GG+C++G+SR T+ +ADP +W + D G+L+ R T + ++P N A D W A
Sbjct: 5 SGGIALGGVDAVSYFTE--GAPRL-GSPAHSVMWKGAVWQFASRSNRERFEANPWAYAPQYGGYCAYGVSRGK-----TV--KADPTVWELRD-GKLYLIRDRTVRVLWENELPENIRAADAAWPA 119
BLAST of mRNA_C-linearis_contig10.581.1 vs. uniprot
Match: A0A1I6M5J6_9RHOB (YHS domain-containing protein n=1 Tax=Yoonia litorea TaxID=1123755 RepID=A0A1I6M5J6_9RHOB) HSP 1 Score: 75.1 bits (183), Expect = 3.040e-13 Identity = 47/147 (31.97%), Postives = 71/147 (48.30%), Query Frame = 1
Query: 220 TAGRYGVMGGTSPPTTASCATSAEVVMKGVDLTNYFSQEYGTPAVFGVAEHEASYNGYRFWFASEENKAKFEEEPLAYIPSWGGFCSWGISRENWWNKDTLGPEADPDLWFITDAGRLHFFRSPTPMSKFLMDVPANTLAGDEVWSA 660
TA G++ S TA T + + G D YF G V G Y G + FASEEN+AKFE +P+AY P +GG+C++ +S+ + T+ P+ W I D G+L+ S ++ D+P + A + W A
Sbjct: 14 TAPVAGIIATRSMAQTAQIYTEGGIAIDGSDTVAYFD---GNGPVAGDPSITTDYMGATWQFASEENRAKFEADPMAYAPQYGGYCAYAVSQG--YTASTV-----PEAWSIVD-GKLYLNFSTGVRRRWERDIPGHIAAANANWPA 149 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.581.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.581.1 >prot_C-linearis_contig10.581.1 ID=prot_C-linearis_contig10.581.1|Name=mRNA_C-linearis_contig10.581.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=253bp MGVGEDEFLIPRRTEFGGAGSSHRMRQPQLGLRKLLQPLAIALGIFGVSAback to top mRNA from alignment at C-linearis_contig10:2660406..2662192- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.581.1 ID=mRNA_C-linearis_contig10.581.1|Name=mRNA_C-linearis_contig10.581.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1787bp|location=Sequence derived from alignment at C-linearis_contig10:2660406..2662192- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:2660406..2662192- >mRNA_C-linearis_contig10.581.1 ID=mRNA_C-linearis_contig10.581.1|Name=mRNA_C-linearis_contig10.581.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1518bp|location=Sequence derived from alignment at C-linearis_contig10:2660406..2662192- (Chordaria linearis ClinC8C monoicous)back to top |