mRNA_C-linearis_contig10.580.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.580.1
Unique NamemRNA_C-linearis_contig10.580.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig10.580.1 vs. uniprot
Match: D7G8N0_ECTSI (50S ribosomal protein L24, chloroplastic n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8N0_ECTSI)

HSP 1 Score: 253 bits (646), Expect = 5.170e-83
Identity = 129/136 (94.85%), Postives = 132/136 (97.06%), Query Frame = 2 
Query:    2 SRRKSRKAHFGAHSEARRVLMSAGLSKDLFEKHNVRSLPVRKGDEVMVVRGAYKNREGKVETCYRRKFVIHVERITREKANGNTVHVGIHPSKVQITKIKMDKDRKALLERKDRTRNGGKPAAGVADADVNMAGVD 409
            SRRKSRKAHFGAHSEARRVLMSAGLSKDLFEK+NVRSLPVR GDEVMVVRGAYKNREGKVETCYRRKFVIH+ERITREKANGNTVHVGIHPSKVQITKIKMDKDR ALL RKDR+RNGGKPAAG ADADVNMAGVD
Sbjct:   36 SRRKSRKAHFGAHSEARRVLMSAGLSKDLFEKYNVRSLPVRAGDEVMVVRGAYKNREGKVETCYRRKFVIHIERITREKANGNTVHVGIHPSKVQITKIKMDKDRVALLARKDRSRNGGKPAAGAADADVNMAGVD 171
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BLAST of mRNA_C-linearis_contig10.580.1 vs. uniprot
Match: A0A835YVZ0_9STRA (50S ribosomal protein L24, chloroplastic n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVZ0_9STRA)

HSP 1 Score: 184 bits (468), Expect = 2.340e-56
Identity = 97/136 (71.32%), Postives = 110/136 (80.88%), Query Frame = 2 
Query:    2 SRRKSRKAHFGAHSEARRVLMSAGLSKDLFEKHNVRSLPVRKGDEVMVVRGAYKNREGKVETCYRRKFVIHVERITREKANGNTVHVGIHPSKVQITKIKMDKDRKALLERKDRTRNGGKPAAGVADADVNMAGVD 409
            SRRKSRKAHF A S  RR++MSA LSK+L  K+NVRS+PVRK DEVMVVRG YKNREGKV  CYRRK+VIH+ER+TREKANG TV +GIHPSKV ITK+K+DKDRK LLERK R    G  A   ++ DVNMAGVD
Sbjct:   10 SRRKSRKAHFTAPSHQRRIIMSASLSKELQAKYNVRSVPVRKDDEVMVVRGHYKNREGKVTACYRRKYVIHIERVTREKANGATVQIGIHPSKVVITKLKLDKDRKELLERKQRKSKAGA-AKKASEKDVNMAGVD 144
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BLAST of mRNA_C-linearis_contig10.580.1 vs. uniprot
Match: A0A7S2V566_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V566_9STRA)

HSP 1 Score: 176 bits (447), Expect = 3.690e-53
Identity = 90/136 (66.18%), Postives = 105/136 (77.21%), Query Frame = 2 
Query:    2 SRRKSRKAHFGAHSEARRVLMSAGLSKDLFEKHNVRSLPVRKGDEVMVVRGAYKNREGKVETCYRRKFVIHVERITREKANGNTVHVGIHPSKVQITKIKMDKDRKALLERKDRTRNGGKPAAGVADADVNMAGVD 409
            SRRKSRKAHF AHS ARRV+MSA LSKDL  K+NVRS+P+RK DEV V RG +KNREGKV  CYR+K+V+HVER T+EK NG  VHVGI PS V ITK+K+DK+RKA+LERKDR +   K      + DVNM  VD
Sbjct:   10 SRRKSRKAHFSAHSTARRVIMSAPLSKDLQAKYNVRSMPIRKDDEVQVTRGYFKNREGKVVQCYRKKYVVHVERCTKEKTNGAQVHVGIAPSNVVITKLKLDKNRKAILERKDRAKGAEKGKGKYTETDVNMGNVD 145
[Close]
BLAST of mRNA_C-linearis_contig10.580.1 vs. uniprot
Match: T0Q9Y6_SAPDV (50S ribosomal protein L24, chloroplastic n=4 Tax=Saprolegniaceae TaxID=4764 RepID=T0Q9Y6_SAPDV)

HSP 1 Score: 176 bits (445), Expect = 7.180e-53
Identity = 92/136 (67.65%), Postives = 107/136 (78.68%), Query Frame = 2 
Query:    2 SRRKSRKAHFGAHSEARRVLMSAGLSKDLFEKHNVRSLPVRKGDEVMVVRGAYKNREGKVETCYRRKFVIHVERITREKANGNTVHVGIHPSKVQITKIKMDKDRKALLERKDRTRNGGKPAAGVADADVNMAGVD 409
            SRRK RKAHFGAHS  RRVLMSA LSKDL  K+NVRS+P+RK DEV +VRG++KNREG+V  CYR+KFVIHVER+ +EK NG  V VGIHPSKV ITK+K+DKDRK +LERK+R   G K      +ADV MA VD
Sbjct:   10 SRRKCRKAHFGAHSTQRRVLMSANLSKDLQSKYNVRSMPIRKDDEVTIVRGSFKNREGRVTQCYRKKFVIHVERVVKEKVNGAAVPVGIHPSKVVITKLKLDKDRKKILERKNRAV-GDKNKGKFTEADVAMANVD 144
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BLAST of mRNA_C-linearis_contig10.580.1 vs. uniprot
Match: A0A7J6P5Z0_PEROL (60S ribosomal protein L26 n=7 Tax=Alveolata TaxID=33630 RepID=A0A7J6P5Z0_PEROL)

HSP 1 Score: 175 bits (443), Expect = 1.400e-52
Identity = 90/136 (66.18%), Postives = 112/136 (82.35%), Query Frame = 2 
Query:    2 SRRKSRKAHFGAHSEARRVLMSAGLSKDLFEKHNVRSLPVRKGDEVMVVRGAYKNREGKVETCYRRKFVIHVERITREKANGNTVHVGIHPSKVQITKIKMDKDRKALLERKDRTRNGGKPAAGVADADVNMAGVD 409
            SRRKSRKAHF A S+ RR++MSA LSK+L  K+NVRS+P+RK DEVMVVRG Y +REGKV  CYR+KFVIH+ER+TR+K NG+  +VG+HPSKV ITK+KMDKDRKALLERK+R+++ GK +    + DV MA VD
Sbjct:   10 SRRKSRKAHFTAPSDQRRIIMSAPLSKELRAKYNVRSVPIRKDDEVMVVRGHYSDREGKVTACYRKKFVIHIERLTRDKVNGSHANVGVHPSKVVITKLKMDKDRKALLERKNRSKDSGKKS--YTEKDVAMAQVD 143
[Close]
BLAST of mRNA_C-linearis_contig10.580.1 vs. uniprot
Match: A0A1V9ZGA6_9STRA (50S ribosomal protein L24, chloroplastic n=2 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZGA6_9STRA)

HSP 1 Score: 175 bits (444), Expect = 1.590e-52
Identity = 92/136 (67.65%), Postives = 107/136 (78.68%), Query Frame = 2 
Query:    2 SRRKSRKAHFGAHSEARRVLMSAGLSKDLFEKHNVRSLPVRKGDEVMVVRGAYKNREGKVETCYRRKFVIHVERITREKANGNTVHVGIHPSKVQITKIKMDKDRKALLERKDRTRNGGKPAAGVADADVNMAGVD 409
            SRRK RKAHFGAHS  RRVLMSA LSKDL  K+NVRS+P+RK DEV +VRG++KNREG+V  CYR+KFVIHVER+ +EK NG  V VGIHPSKV ITK+K+DKDRK +LERK+R   G K      +ADV MA VD
Sbjct:   24 SRRKCRKAHFGAHSTQRRVLMSANLSKDLQAKYNVRSMPIRKDDEVTIVRGSFKNREGRVTQCYRKKFVIHVERVVKEKVNGAAVPVGIHPSKVVITKLKLDKDRKKILERKNRAI-GDKNKGKFTEADVAMANVD 158
[Close]
BLAST of mRNA_C-linearis_contig10.580.1 vs. uniprot
Match: A0A2D4BSL1_PYTIN (50S ribosomal protein L24, chloroplastic (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BSL1_PYTIN)

HSP 1 Score: 173 bits (438), Expect = 7.510e-52
Identity = 95/137 (69.34%), Postives = 111/137 (81.02%), Query Frame = 2 
Query:    2 SRRKSRKAHFGAHSEARRVLMSAGLSKDLFEKHNVRSLPVRKGDEVMVVRGAYKNREGKVETCYRRKFVIHVERITREKANGNTVHVGIHPSKVQITKIKMDKDRKALLERKDRTRNG-GKPAAGVADADVNMAGVD 409
            SRRKSRKAHFG+HS ARRVLMSA LSK+L +K+NVRSLP+RK DEV +VRG++KNREG+V T YR+KFVIHVER+ REKANG TV VGI  SKV ITKIK+DKDRK +LERK+R  +  GK      +ADV MA VD
Sbjct:    9 SRRKSRKAHFGSHSTARRVLMSAPLSKELQKKYNVRSLPIRKDDEVTIVRGSFKNREGRVTTVYRKKFVIHVERVVREKANGATVPVGIDASKVVITKIKLDKDRKKILERKNRATDAKGK----FTEADVQMANVD 141
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BLAST of mRNA_C-linearis_contig10.580.1 vs. uniprot
Match: A0A7S2C9Q4_9STRA (50S ribosomal protein L24, chloroplastic n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C9Q4_9STRA)

HSP 1 Score: 173 bits (438), Expect = 7.750e-52
Identity = 87/135 (64.44%), Postives = 111/135 (82.22%), Query Frame = 2 
Query:    5 RRKSRKAHFGAHSEARRVLMSAGLSKDLFEKHNVRSLPVRKGDEVMVVRGAYKNREGKVETCYRRKFVIHVERITREKANGNTVHVGIHPSKVQITKIKMDKDRKALLERKDRTRNGGKPAAGVADADVNMAGVD 409
            R KSRKAHF A S  +R +MSA LSKDL  K+NVRS+P+RK DEVMVVRG++KNREGKV   YR+K+VIH+ER++R+KANG  V++GIHPS   ITK+K+DKDRK +L+RKDR+++  K   G++DADVNMAGVD
Sbjct:   11 RNKSRKAHFTASSSQKRKIMSASLSKDLVSKYNVRSMPIRKDDEVMVVRGSHKNREGKVIQVYRKKYVIHIERVSRDKANGAPVNIGIHPSNCVITKLKLDKDRKNILDRKDRSKDSSK---GLSDADVNMAGVD 142
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BLAST of mRNA_C-linearis_contig10.580.1 vs. uniprot
Match: A0A451FLG4_9STRA (50S ribosomal protein L24, chloroplastic n=1 Tax=Eustigmatophyceae sp. Mont 10/10-1w TaxID=2506145 RepID=A0A451FLG4_9STRA)

HSP 1 Score: 173 bits (438), Expect = 8.530e-52
Identity = 92/136 (67.65%), Postives = 107/136 (78.68%), Query Frame = 2 
Query:    2 SRRKSRKAHFGAHSEARRVLMSAGLSKDLFEKHNVRSLPVRKGDEVMVVRGAYKNREGKVETCYRRKFVIHVERITREKANGNTVHVGIHPSKVQITKIKMDKDRKALLERKDRTRNGGKPAAGVADADVNMAGVD 409
            SRRKSRKAHF A S  RRVLMSA LSKDL  K+ VRS+P+RK DEV VVRG +KN +GKV   YR+KFVIH++RITREKANG TV+VGIHPSKV ITK+KM+K RKA+LERK R  +  K      +ADVN+AGVD
Sbjct:   10 SRRKSRKAHFSAPSHMRRVLMSAPLSKDLQAKYKVRSMPIRKEDEVTVVRGRHKNSDGKVTQVYRKKFVIHIDRITREKANGATVNVGIHPSKVVITKLKMNKSRKAILERKARKSDADKAKGKFTEADVNLAGVD 145
[Close]
BLAST of mRNA_C-linearis_contig10.580.1 vs. uniprot
Match: A0A3R5U3L5_9STRA (50S ribosomal protein L24, chloroplastic n=4 Tax=Eustigmatophyceae TaxID=5747 RepID=A0A3R5U3L5_9STRA)

HSP 1 Score: 172 bits (437), Expect = 1.250e-51
Identity = 89/136 (65.44%), Postives = 109/136 (80.15%), Query Frame = 2 
Query:    2 SRRKSRKAHFGAHSEARRVLMSAGLSKDLFEKHNVRSLPVRKGDEVMVVRGAYKNREGKVETCYRRKFVIHVERITREKANGNTVHVGIHPSKVQITKIKMDKDRKALLERKDRTRNGGKPAAGVADADVNMAGVD 409
            SRRKSRK HF A S  RR++MSA LSKDL  K+ VRS+P+RK DEV VVRG++KNR+GKV   YR+KFVIH++R+TREKANG TV+VGIHPSKV ITK+K++K RKA+LERK RT    K    + +ADVN+AGVD
Sbjct:   11 SRRKSRKQHFTAPSHVRRIIMSAPLSKDLRAKYKVRSIPIRKEDEVTVVRGSFKNRDGKVTQVYRKKFVIHIDRVTREKANGATVNVGIHPSKVIITKLKLNKSRKAILERKARTSAADKNKGKLTEADVNLAGVD 146
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.580.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8N0_ECTSI5.170e-8394.8550S ribosomal protein L24, chloroplastic n=2 Tax=E... [more]
A0A835YVZ0_9STRA2.340e-5671.3250S ribosomal protein L24, chloroplastic n=1 Tax=T... [more]
A0A7S2V566_9STRA3.690e-5366.18Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
T0Q9Y6_SAPDV7.180e-5367.6550S ribosomal protein L24, chloroplastic n=4 Tax=S... [more]
A0A7J6P5Z0_PEROL1.400e-5266.1860S ribosomal protein L26 n=7 Tax=Alveolata TaxID=... [more]
A0A1V9ZGA6_9STRA1.590e-5267.6550S ribosomal protein L24, chloroplastic n=2 Tax=A... [more]
A0A2D4BSL1_PYTIN7.510e-5269.3450S ribosomal protein L24, chloroplastic (Fragment... [more]
A0A7S2C9Q4_9STRA7.750e-5264.4450S ribosomal protein L24, chloroplastic n=1 Tax=F... [more]
A0A451FLG4_9STRA8.530e-5267.6550S ribosomal protein L24, chloroplastic n=1 Tax=E... [more]
A0A3R5U3L5_9STRA1.250e-5165.4450S ribosomal protein L24, chloroplastic n=4 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:2655467..2659233 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score218.0
Seed ortholog evalue2.3e-54
Seed eggNOG ortholog2880.D7G8N0
Preferred nameRPL26
KEGG koko:K02898,ko:K18449,ko:K20068
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000075,GO:0000077,GO:0000184,GO:0000278,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006417,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006974,GO:0006977,GO:0007049,GO:0007093,GO:0007154,GO:0007165,GO:0007346,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009266,GO:0009314,GO:0009409,GO:0009411,GO:0009416,GO:0009507,GO:0009536,GO:0009605,GO:0009628,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0010212,GO:0010332,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010941,GO:0010942,GO:0010948,GO:0015031,GO:0015833,GO:0015934,GO:0016020,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0022402,GO:0022613,GO:0022625,GO:0022626,GO:0023051,GO:0023052,GO:0023056,GO:0030330,GO:0030424,GO:0031090,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031570,GO:0031571,GO:0031667,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032991,GO:0033036,GO:0033267,GO:0033365,GO:0033554,GO:0034248,GO:0034250,GO:0034470,GO:0034613,GO:0034641,GO:0034644,GO:0034645,GO:0034655,GO:0034660,GO:0035556,GO:0042254,GO:0042273,GO:0042594,GO:0042770,GO:0042788,GO:0042886,GO:0042981,GO:0042995,GO:0043005,GO:0043043,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043195,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043516,GO:0043517,GO:0043603,GO:0043604,GO:0043679,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044306,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044456,GO:0044463,GO:0044464,GO:0044773,GO:0044774,GO:0044783,GO:0044819,GO:0045047,GO:0045184,GO:0045202,GO:0045727,GO:0045786,GO:0045787,GO:0045930,GO:0046483,GO:0046700,GO:0046907,GO:0048027,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051641,GO:0051649,GO:0051716,GO:0051726,GO:0060255,GO:0065007,GO:0070013,GO:0070727,GO:0070972,GO:0071156,GO:0071158,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071482,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072331,GO:0072395,GO:0072401,GO:0072413,GO:0072422,GO:0072431,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0080134,GO:0080135,GO:0090068,GO:0090150,GO:0090304,GO:0097159,GO:0097458,GO:0098588,GO:0098793,GO:0098805,GO:0104004,GO:0120025,GO:0120038,GO:0150034,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901796,GO:1901798,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902162,GO:1902164,GO:1902165,GO:1902167,GO:1902229,GO:1902231,GO:1902253,GO:1902255,GO:1902400,GO:1902402,GO:1902403,GO:1902531,GO:1902533,GO:1902806,GO:1902807,GO:1903047,GO:1904803,GO:1990904,GO:1990928,GO:2000045,GO:2000112,GO:2000134,GO:2001020,GO:2001022,GO:2001233,GO:2001235,GO:2001242,GO:2001244
EggNOG free text desc.regulation of translation involved in cellular response to UV
EggNOG OGsCOG0198@1,KOG3401@2759
Ec32 ortholog description60S ribosomal protein L26
Ec32 orthologEc-22_002330.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko04131
Exons3
Model size659
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.580.1prot_C-linearis_contig10.580.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 2655528..2658986 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927342.7280781-UTR-C-linearis_contig10:2655466..26555271622927342.7280781-UTR-C-linearis_contig10:2655466..2655527Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2655467..2655527 +
1690879639.3891914-UTR-C-linearis_contig10:2655466..26555271690879639.3891914-UTR-C-linearis_contig10:2655466..2655527Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2655467..2655527 +
1622927342.780824-UTR-C-linearis_contig10:2658986..26592331622927342.780824-UTR-C-linearis_contig10:2658986..2659233Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2658987..2659233 +
1690879639.4265969-UTR-C-linearis_contig10:2658986..26592331690879639.4265969-UTR-C-linearis_contig10:2658986..2659233Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2658987..2659233 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927342.7448142-CDS-C-linearis_contig10:2655527..26555691622927342.7448142-CDS-C-linearis_contig10:2655527..2655569Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2655528..2655569 +
1690879639.4001443-CDS-C-linearis_contig10:2655527..26555691690879639.4001443-CDS-C-linearis_contig10:2655527..2655569Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2655528..2655569 +
1622927342.7610137-CDS-C-linearis_contig10:2657403..26575451622927342.7610137-CDS-C-linearis_contig10:2657403..2657545Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2657404..2657545 +
1690879639.4083064-CDS-C-linearis_contig10:2657403..26575451690879639.4083064-CDS-C-linearis_contig10:2657403..2657545Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2657404..2657545 +
1622927342.77099-CDS-C-linearis_contig10:2658819..26589861622927342.77099-CDS-C-linearis_contig10:2658819..2658986Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2658820..2658986 +
1690879639.417029-CDS-C-linearis_contig10:2658819..26589861690879639.417029-CDS-C-linearis_contig10:2658819..2658986Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2658820..2658986 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.580.1

>prot_C-linearis_contig10.580.1 ID=prot_C-linearis_contig10.580.1|Name=mRNA_C-linearis_contig10.580.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=117bp
MSAGLSKDLFEKHNVRSLPVRKGDEVMVVRGAYKNREGKVETCYRRKFVI
HVERITREKANGNTVHVGIHPSKVQITKIKMDKDRKALLERKDRTRNGGK
PAAGVADADVNMAGVD*
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mRNA from alignment at C-linearis_contig10:2655467..2659233+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.580.1 ID=mRNA_C-linearis_contig10.580.1|Name=mRNA_C-linearis_contig10.580.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3767bp|location=Sequence derived from alignment at C-linearis_contig10:2655467..2659233+ (Chordaria linearis ClinC8C monoicous)
CTCTCGGCGTAAGAGCCGCAAGGCGCACTTCGGTGCGCACTCTGAGGCCC
GCCGGGTGCTCATGTCCGCGGGCCTGAGCAAGGACCTCTTCGAGAAGCAC
AACGTGAGCTGTACAGCAGCGTAGTTACGTAACGCTCTTCACCGTCCATT
AGCCAACGCCCCACGCGTTTTACACCCTACCGGTGAGACATTAAACCGCA
CCACACGACAAAAAGGCGGAGATGGTCCTATCCACATAACATGGAGGAAC
AGCACTCTTTCGTGATGGTTCCCGGCCACGTTGTTTGATGTTCCTCAAGA
GCCGTAGGCGAATATAACCAGTGTCCACCTCTTGTGGCGTCCGGGTAGGT
GGCTGGCGGCCAGTGACGAGCAAACTTTATGAAGACTTTGATGCTGATTT
GACCTTGATGAGCAAACACAAGACTACGATGGACTGAGGCTCCGCCAGCC
TGTTTCTTCTGTGACAGCAGTATTTCAGCCATATCCTTCCGTTGGCTGCC
GCAGCAACGCAAACAGGCTGCATTTTGTTGTGCGTGGTTGTCTTGCATGC
AGCAGCCCCCCCTCTACCCAGGAAAATACGATGTCGTTTTAAGTCTTTGA
GATTCCGATGCATGCATGATGTCTGGCGCGGTGACCTGTGATGACGAAAC
TTAATGAAGACTTTGATGCTGATCTTGACCTTGATGAGCAAACACAAGAC
TACGATGGACTGAGGCTCCGCCAGCCTGTTTCTTGTGTGACAGCAGTATT
TCAGCCATATCCTTCCGTTGGCTGCCGCAGCAACGCAAACAGGCTGCATT
TTGTTGTGCGTGGTTGTCTTGCATGCAGCAGCCCCCCCTCTACCCAGGAA
AATACGATGTCGTTTTAAGTCTTTGAGATTCCGATGCATGCATGATGTCT
GGCGCGGTGACCTGTGATGACGAAACTTTATGAAGACTTTGATGCTGATC
TTGACCTTGATGAGCAAACACAAGACTACGATGGACTGAGGCACCACTCT
TTTTTTCAATCAGCATTCGTCGATGCTTTTCCTTTGGGTAGAGGATCCAT
ATATGGTTGTTCATATGAATGTCTGTAGAACTCTCGGACTTGTAGTCTCG
CCGCGAAAGTGGGGCATGAACTGTTCTGAATGTGGAACCAACTCTTTTGT
GTACGCGCTATTGCTGGTCTTGTCCTTCCTGAGTAGAACAAGTCTATGAT
AGATGGGATTGATTGAAAAAACAGTCCTTCAGTTCGTTCTGTGTTTTTCA
TGCATGCATCCCAATCCGCATGATGCCTCTGTGCGAAGTGAGCCCCCATG
ATTATTCCGCAAATCATACCAAGATGTGTTCCAACACACGATGTGCAACA
ATCGCAAATTCAGTCTTCAATATGACGGGGCTTTTTCACACACAAGACAT
CAACGTGGTTGACCCAAGTGCGGCGTTGCTGAGTTGTAGTAATGGTTTCT
GTGCTGATAATTGAGGTACAGCAGCAGTAGTAGTTGGCCTTTGTCTATGC
AGGCGTCTTCTATCGTTCAGTATAAATAACACGGATTTCTAAGGGCACTG
AGAAGAGACCCGTTTGAAATGTGAAGACATTACCAACCATACTGCTGTAG
AAGTGCCTCTATTTTCACGTGTATCATCTGTGATGTTCGAATAATCACTG
CGGTGACCTATGATGACGAAATTTTGTAAAGACTCTGATGCTGATTTTGA
CCTTGATGAGCAAAAACAAGACTACGATGAACCGAGGCACCGCTTGTTTT
GTTATCTACAGTCAGATCGCTATTTACAGCAGAACTCACCCACTCTTGTT
AATCGTAAATATGTAAATATGATCCCAGATGATTTGTATTTCGCAGGGAA
AAACGGCCTGATTGACGATTACGTTGGGTTTTATGTCTTGTCTTGATATC
GGGTCGCTTCCCCGTTCGCTTTCTTTATTTTTCGCAGGTCCGATCGCTCC
CCGTCCGGAAGGGTGACGAGGTGATGGTGGTCCGAGGGGCCTACAAGAAT
CGCGAGGGCAAGGTCGAGACCTGCTACCGCCGCAAGTTCGTTATCCATGT
CGAGCGCATCACCAGGGAGAAGGCCAACGGTAAGAAGAGCCAAAATGGCG
TGTTGCCCGCGGCTTGATGGAACTGGGGCTGATCGGAAAAGAGGGAGCAT
TGTTGGGTGTTGACGATGGAGCGAGATTCATGACGTGAATCCGTCGACGT
GTCATTTGTGCGGCGACCCAAGCAATTGAACCCGGTTGCTTCGTTTTTCT
TTTTTTCTTTGGGGAAACTTGACAAGCGTCACGTGTTTTCCATCCGAGGG
CTCATTTACACTCTAGGACCGGGAACCCGCGTGCCCCTCTCTGCTTGTAC
GTTGTGTATGCTTGTCGAACGACCAAGGTCACACACTTGACAGCAGGAGT
TCAGTACATGACGTATTTTGTGAGTTTTGTTTTGGGCCCCCGATGAACGT
CAGACCCAAGCCAGGCCGGCGGCCATACTGTCTTGTATGCGGTAGCTCCC
CCTTGTTCTCCGAGGAAAAGACGATTCATATCGTTTTGAGTTTTTGAGAT
TCCGATGCATGCATGATGTCTGGCGCGGTGACCTGTGTTGACGAAACTTT
ATGAAGACTTTGATGCTGATCTTGACCTTGATGAGCAAACACAAGACTAC
GATGGACTGCGGCACCGCTCTTCACTTCGTTACTTAACGCCTAATTTAAC
GGGAGCTGCTGTCGGATATTTGCTTCGTCTACTCGGCATCAGAGCCACCC
GTCACGCGAACGTTTTCCCAAAACGCTCTGTGATGCTTCGCAGTGCCGCT
GAAAATCTATTTGTGTGTGCGTTTTCGGTCCCATTTATTTTGGCGACAGT
CCCTTTCTGATCAAGGCGAGACGTGTACTACACGTTGCGGTGTATTTAGA
GTACTACACTTGTTCAGTGTATTTTTCTGTACAACTAGAACCAACCGGGG
TCACACAGGAGGGGGTAAACACTGGGGCTTTTTCCTTCTTTTTCTGGTTC
TTTTTTGCCCCACCTTCCTCCTGCGGTGCTTGCCTTGGATTTTATCGCGA
GAAGGGTGCAGCCATCCCTTTCCCGCGTCAACGTGCTAAGTCGAAGTTTG
GTACGCACGAGCTTTTCCAGCTATCTATGTTATCGCTTTCACCTGCAAAG
TCTCAAAATAATCACCTTTGCTTGGAATTGAACTCCAGACTTTGCTGCTA
GTGGGTTCGAGGTTAAACCACTAGTCCACTGGGGCGACCGGCATGTAGAT
GATCGGATTGTTGTCTCAACTTCAGTATTGAATGCGGTGTTCGACCGTTC
CTGACCACGCGCCGCGATCGTCCCCCAAAACGTTCGGCCGCTAAAAACCA
CAGGAAACACCGTGCACGTCGGCATCCACCCTTCCAAGGTCCAGATCACC
AAGATCAAGATGGACAAGGACCGCAAGGCGCTGTTGGAGCGCAAGGATCG
CACTCGCAACGGCGGCAAGCCCGCGGCCGGCGTCGCTGACGCGGACGTGA
ACATGGCGGGCGTGGACTAGACTTGACACGAACTCGAGGACAGACCAACG
GTTGAATAAGGGGCGGGATTCGCCATACGTTGTAGCGAAAGCGTCAGCAC
GTCCTGTGCTTTTGTAACGTGTCATGCTTGCTCGTGCTGCCAAGTTGGTC
CCACTGCTGTGCACCGCCTGACAGAGTTGGAGTGTTTCGTTCCGGCCTGC
CTTCCTTGTTGTGTTGTGAAAGTCTTCTGCCCGTTCGAGACGTGATCTTT
CTCTGCATGATGACAAA
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Coding sequence (CDS) from alignment at C-linearis_contig10:2655467..2659233+

>mRNA_C-linearis_contig10.580.1 ID=mRNA_C-linearis_contig10.580.1|Name=mRNA_C-linearis_contig10.580.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at C-linearis_contig10:2655467..2659233+ (Chordaria linearis ClinC8C monoicous)
ATGTCCGCGGGCCTGAGCAAGGACCTCTTCGAGAAGCACAACATGTCCGC
GGGCCTGAGCAAGGACCTCTTCGAGAAGCACAACGTCCGATCGCTCCCCG
TCCGGAAGGGTGACGAGGTGATGGTGGTCCGAGGGGCCTACAAGAATCGC
GAGGGCAAGGTCGAGACCTGCTACCGCCGCAAGTTCGTTATCCATGTCGA
GCGCATCACCAGGGAGAAGGCCAACGGTCCGATCGCTCCCCGTCCGGAAG
GGTGACGAGGTGATGGTGGTCCGAGGGGCCTACAAGAATCGCGAGGGCAA
GGTCGAGACCTGCTACCGCCGCAAGTTCGTTATCCATGTCGAGCGCATCA
CCAGGGAGAAGGCCAACGGAAACACCGTGCACGTCGGCATCCACCCTTCC
AAGGTCCAGATCACCAAGATCAAGATGGACAAGGACCGCAAGGCGCTGTT
GGAGCGCAAGGATCGCACTCGCAACGGCGGCAAGCCCGCGGCCGGCGTCG
CTGACGCGGACGTGAACATGGCGGGCGTGGACTAGGAAACACCGTGCACG
TCGGCATCCACCCTTCCAAGGTCCAGATCACCAAGATCAAGATGGACAAG
GACCGCAAGGCGCTGTTGGAGCGCAAGGATCGCACTCGCAACGGCGGCAA
GCCCGCGGCCGGCGTCGCTGACGCGGACGTGAACATGGCGGGCGTGGACT
AG
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