mRNA_C-linearis_contig10.577.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.577.1
Unique NamemRNA_C-linearis_contig10.577.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.577.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:2617133..2617769 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size393
Cds size255
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.577.1prot_C-linearis_contig10.577.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 2617228..2617726 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927324.1309211-UTR-C-linearis_contig10:2617132..26172271622927324.1309211-UTR-C-linearis_contig10:2617132..2617227Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2617133..2617227 -
1690879626.6315024-UTR-C-linearis_contig10:2617132..26172271690879626.6315024-UTR-C-linearis_contig10:2617132..2617227Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2617133..2617227 -
1622927324.1585488-UTR-C-linearis_contig10:2617726..26177691622927324.1585488-UTR-C-linearis_contig10:2617726..2617769Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2617727..2617769 -
1690879626.655822-UTR-C-linearis_contig10:2617726..26177691690879626.655822-UTR-C-linearis_contig10:2617726..2617769Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2617727..2617769 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927324.1406283-CDS-C-linearis_contig10:2617227..26172961622927324.1406283-CDS-C-linearis_contig10:2617227..2617296Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2617228..2617296 -
1690879626.6400716-CDS-C-linearis_contig10:2617227..26172961690879626.6400716-CDS-C-linearis_contig10:2617227..2617296Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2617228..2617296 -
1622927324.1503785-CDS-C-linearis_contig10:2617540..26177261622927324.1503785-CDS-C-linearis_contig10:2617540..2617726Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2617541..2617726 -
1690879626.6479418-CDS-C-linearis_contig10:2617540..26177261690879626.6479418-CDS-C-linearis_contig10:2617540..2617726Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2617541..2617726 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.577.1

>prot_C-linearis_contig10.577.1 ID=prot_C-linearis_contig10.577.1|Name=mRNA_C-linearis_contig10.577.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=85bp
MIPTESQTGCRTRLAPATSAATSAATAAANADGPCRRRTVRTKRSGYPET
INPIEWEAGTYGVPTCTRAIRYEKVGEGVVLRRG*
back to top

mRNA from alignment at C-linearis_contig10:2617133..2617769-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.577.1 ID=mRNA_C-linearis_contig10.577.1|Name=mRNA_C-linearis_contig10.577.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=637bp|location=Sequence derived from alignment at C-linearis_contig10:2617133..2617769- (Chordaria linearis ClinC8C monoicous)
GAGAACGCGCCCGTCGGGCAGAAGGACGTCGATTTACCGGAAGATGATCC
CGACCGAATCCCAGACTGGTTGTCGGACGCGTCTGGCACCAGCGACGTCG
GCAGCGACGTCAGCAGCGACGGCGGCAGCGAATGCGGATGGGCCATGTCG
CCGGAGGACGGTTCGGACGAAGCGGAGTGGGTACCCGGAGACGATTAACC
CAATCGAATGGGAGGCTGGCACGTACGGGGTGAGTGCACGTTAGTAAGGT
CGTCACCTATGTCGAGTATCGCAAAAGTTGCCTTCGGCGTGTTTCCCTCT
TACGATCAGGCTTTCGTGGTGCACAGAAAGTCAAGTTAATTGCCAACATT
CACGTACAGTGCCCTGACTTTCCGTGACTTTGAACGAGAGACACTACACA
CCCGATCCATACCTTGCACAGATAACGTCAGATATATCTGCCCTCTTCTC
TTACGCTTCGGAATCTGCCACAGGTGCCCACTTGCACGCGAGCAATCCGC
TACGAAAAAGTCGGAGAGGGGGTGGTTCTGAGACGAGGGTAGGGACTGGC
TTTCGGGGGGACGAGAGCAGGAGGGCGGTAGCTGGCGTAGATCGGCCGGT
TGATTCTCCTCGAGGCGATGGTGAAGGAGGGGGGCAC
back to top

Coding sequence (CDS) from alignment at C-linearis_contig10:2617133..2617769-

>mRNA_C-linearis_contig10.577.1 ID=mRNA_C-linearis_contig10.577.1|Name=mRNA_C-linearis_contig10.577.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at C-linearis_contig10:2617133..2617769- (Chordaria linearis ClinC8C monoicous)
ATGATCCCGACCGAATCCCAGACTGGTTGTCGGACGCGTCTGGCACCAGC
GACGTCGGCAGCGACGTCAGCAGCGACGGCGGCAGCGAATGCGGATGGGC
CATGTCGCCGGAGGACGGTTCGGACGAAGCGGAGTGGGTACCCGGAGACG
ATTAACCCAATCGAATGGGAGGCTGGCACGTACGGGATGATCCCGACCGA
ATCCCAGACTGGTTGTCGGACGCGTCTGGCACCAGCGACGTCGGCAGCGA
CGTCAGCAGCGACGGCGGCAGCGAATGCGGATGGGCCATGTCGCCGGAGG
ACGGTTCGGACGAAGCGGAGTGGGTACCCGGAGACGATTAACCCAATCGA
ATGGGAGGCTGGCACGTACGGGGTGCCCACTTGCACGCGAGCAATCCGCT
ACGAAAAAGTCGGAGAGGGGGTGGTTCTGAGACGAGGGTAGGTGCCCACT
TGCACGCGAGCAATCCGCTACGAAAAAGTCGGAGAGGGGGTGGTTCTGAG
ACGAGGGTAG
back to top