mRNA_C-linearis_contig10.574.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.574.1
Unique NamemRNA_C-linearis_contig10.574.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig10.574.1 vs. uniprot
Match: D7G8N2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8N2_ECTSI)

HSP 1 Score: 332 bits (852), Expect = 3.540e-104
Identity = 172/245 (70.20%), Postives = 202/245 (82.45%), Query Frame = 1 
Query:  631 RWPWRRSKKEEQQGNKQENSEQVEGRGEVEKRAGLFTYDWDNGERIIWKASKRSRAEVEEDGRKLSDYLALPPTDYSLLDPKMVTRLSDETFRMDGATVNIVGTKVQPVIFVKVEVQPESSLANIMVEKVELEGSEAVRSAGGSFNVTSSTVVSCAEIEGA-GEVKLMELRTAADIEIELLIPNENFVPPGVLRRAGNFVMQRVVDIGLPQFTKFLKRDYTRWAEGDDSRGAVVSEGEALIEQGD 1362
            RWPWRR        N     ++V   GE EK+  LFTYDWDNG+R++W ASKRS  EV E  RKL DYLALPPT+YSLLDPKM+TRLS+ETFRMDGAT++IVGTK++PV+FV+VEVQPE+S+ANIMVE+VEL+GSEAVRSAGGSFNV+SSTVVSCA+ EG   +  +MELR +++I IELL+PNENFVP GVLRRAGNFVMQRVVDIGLPQFT FL+RDY RWAEGDD R AV +EGE+LI   D
Sbjct:   96 RWPWRR--------NSTSRRQRV---GEAEKKQ-LFTYDWDNGDRVVWSASKRSNVEVGEGTRKLKDYLALPPTEYSLLDPKMITRLSEETFRMDGATMSIVGTKIKPVLFVRVEVQPENSMANIMVERVELDGSEAVRSAGGSFNVSSSTVVSCAKKEGTPADANIMELRASSNIAIELLVPNENFVPVGVLRRAGNFVMQRVVDIGLPQFTYFLRRDYARWAEGDDDRAAVAAEGESLIATDD 328
[Close]
BLAST of mRNA_C-linearis_contig10.574.1 vs. uniprot
Match: A0A836CCG5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCG5_9STRA)

HSP 1 Score: 164 bits (416), Expect = 1.480e-42
Identity = 88/203 (43.35%), Postives = 123/203 (60.59%), Query Frame = 1 
Query:  757 GERIIWKASKRSRAEVEEDGRKLSDYLALPPTDYSLLDPKMVTRLSDETFRMDGATVNIVGTKVQPVIFVKVEVQPESSLANIMVEKVELEGSEAVRSAGGSFNVTSSTVVSCAEIEGAGEVKLMELRTAADIEIELLIPNENFVPPGVLRRAGNFVMQRVVDIGLPQFTKFLKRDYTRWAEGDDSRGAVVSEGEALIEQGDG 1365
            G R    AS  S+  V E  R L  YL+LPPT YS+LDP+ + R+  +TF+ +  T+N  G  V PV+ ++V V+       I V  VELEGS A+RSA  SF    +TVV+C + E  G      LR++  + IE+ +P EN++P G L R G F++QR +D+ LPQF ++L RDY RWAEGDD+R  V+ + + L EQ  G
Sbjct:   27 GRRAGIAASANSKKRVREGTRGLLAYLSLPPTQYSVLDPRQIKRVGADTFKCEPGTLNFFGNAVSPVLLLQVRVEEGRGRVEIHVVSVELEGSPAIRSASDSFTCECATVVTCGDPERGGR---RALRSSVSLRIEVAVPRENWLPLGALTRGGTFILQRCMDLFLPQFVRYLARDYARWAEGDDARAPVIDD-DGLSEQQQG 225
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BLAST of mRNA_C-linearis_contig10.574.1 vs. uniprot
Match: A0A6S9EBA2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9EBA2_HETAK)

HSP 1 Score: 118 bits (295), Expect = 5.410e-26
Identity = 66/196 (33.67%), Postives = 108/196 (55.10%), Query Frame = 1 
Query:  742 YDWDNGERIIWKASKRSRAEVEEDGRKLSDYLALPPTDYSLLDPKMVTRLSDETFRMDGATVNIVGTKVQPVIFVKVEVQPESSLANIMVEKVELEGSEAVRSAGGSFNVTSSTVVSCAEIEGAGEVKLMELRTAADIEIELLIPNENFVPPGVLRRAGNFVMQRVVDIGLPQFTKFLKRDYTRWAEG-DDSRGAV 1326
            +D   G+ + W A  ++  +V E  R L DYLALPP+ YS+LD  M+ RL +  FR     +N+ G KV PV+ V+V+V  +  ++ + V K E+ GSEA   A G+F V S T++          + + +L+   ++ I   +P    VP  +  R GNF+M++ + +   QF + L +DY +W++G +D R  V
Sbjct:   65 FDPTKGKVVTWTAEYKASQQVVEGKRSLDDYLALPPSQYSVLDEGMIQRLGENRFRTQVDPINMFGNKVIPVLEVEVDVSKDRPMSTLTVTKCEITGSEAADKANGTFKVESRTIIDYER----PSLLMRKLQVDVNLRIRFRLPERAPVPVALAERTGNFLMRQSLKLVASQFVRILAKDYKQWSQGLNDDRKPV 256
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BLAST of mRNA_C-linearis_contig10.574.1 vs. uniprot
Match: A0A7S3BZT8_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3BZT8_9VIRI)

HSP 1 Score: 102 bits (254), Expect = 6.850e-21
Identity = 69/215 (32.09%), Postives = 112/215 (52.09%), Query Frame = 1 
Query:  733 LFTYDWDNGERIIWKASKRSRAEVEE-DG-RKLSDYLALPPTDYSLLDPKMVTRLSDETFRMDGATVNIVGTKVQPVIFVKVEVQPESSLANIMVEKVELEGSEAVRSAGGSFNVTSSTVVSCAEIEGAGEVKLMELRTAADIEIELLIPNENFVPPGVLRRAGNFVMQRVVDIGLPQFTKFLKRDYTRWAEGDDSRGAVV---SEGEALIEQGD 1362
            L  +D   G +I + A +     VEE DG R L +Y+ALP + YS+LD   + RLS++TF +    +      ++PV+  +V  +PE     I V  V L G + + +  G+F + SS  VS  +   AG+ +  E+ + A + + +++P  N +P G++ R G+ +M   + + +P+F K L  DY  W  GDDSR A     S G   I  G+
Sbjct:   13 LAAFDARPGTKIWFSAERSGSTAVEEKDGWRSLGEYMALPVSQYSVLDGATIVRLSEDTFELSLEALKFFSFTLKPVLIAQVVTKPEGGCC-IQVLDVTLRGPKLIEAFNGTFFIDSSNEVSLTQAT-AGDGQ--EILSEAHVRVGVVVPKWNMLPLGLVERTGSALMAATLAVVVPRFLKQLAEDYAAWGAGDDSRSAKSTGQSAGTEAISVGE 223
[Close]
BLAST of mRNA_C-linearis_contig10.574.1 vs. uniprot
Match: A0A1D2A9B2_AUXPR (Uncharacterized protein n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D2A9B2_AUXPR)

HSP 1 Score: 102 bits (254), Expect = 1.620e-20
Identity = 66/179 (36.87%), Postives = 97/179 (54.19%), Query Frame = 1 
Query:  769 IWKASKRSRAEVEEDGRKLSDYLALPPTDYSLLDPKMVTRLSDETFRMDGATVNIVGTKVQPVIFVKVEVQPESSLANIMVEKVELEGSEAVRSAGGSFNVTSSTVVSCAEIEGAGEVKLMELRTAADIEIELLIPNENFVPPGVLRRAGNFVMQRVVDIGLPQFTKFLKRDYTRWAEG 1305
            I KA+K +   ++E  R L+DY+ALP + YS+LD + V RL D+TF    A +     +V PV+ V V V P     +++  K EL GS  VR+A   F       VS    E  G   L+   +  D+ + L +P    +P G ++  GN V+ RV+D+ LP+F K L++DY  WAEG
Sbjct:   78 ILKAAKVATHGLQESSRPLADYMALPASQYSVLDAETVERLDDDTFLCHVAGLTFFSFEVHPVLTVSVSVGPTGPTVDLL--KTELRGSRTVRAANERFTARMRNRVSWKPGEEEGARVLV---SDVDLTVTLELPGWFPLPRGAVQATGNAVLGRVLDVALPRFLKQLEKDYQLWAEG 251
[Close]
BLAST of mRNA_C-linearis_contig10.574.1 vs. uniprot
Match: A0A7S3C1G7_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3C1G7_9VIRI)

HSP 1 Score: 91.3 bits (225), Expect = 2.890e-17
Identity = 62/197 (31.47%), Postives = 108/197 (54.82%), Query Frame = 1 
Query:  775 KASKRSRAEVEEDGRKLSDYLALPPTDYSLLDPKMVTRLSDETFRMDGATVNIVGTKVQPVIFVKVEVQPESSLANIMVEKVELEGSEAVRSAGGSFNVTSSTVVSCAEIEGAGEVKLMELRTAADIEIELLIPNE-NFVPPGVLRRAGNFVMQRVVDIGLPQFTKFLKRDYTRWAEGDDSRGAV--VSEGEALIEQ 1356
            +A K     + E  R L++Y+ALP + YS+LD + V RL D+TFR        +G +V+PV+ ++V         +++    EL+GS  + +    F+      VS  E E AGE KL  + ++  +E+++ +P     +P   L  +G+ V+Q +++I +P F + L+ DY  WA GDDSR A+  ++  +A ++Q
Sbjct:    2 RAEKSLVRPLVERERPLAEYMALPASQYSVLDAQRVERLGDDTFRCFVGAFGFLGVRVEPVLTLQVATGARGCTISLL--STELQGSSLIVAQNDKFDARMRNEVSYNEGEAAGE-KL--ITSSVSLEVDVQVPWAFRLLPTKALSASGSGVLQAMLNIMVPSFVRQLEGDYCAWAAGDDSRKALGDLTLDDAQLQQ 193
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BLAST of mRNA_C-linearis_contig10.574.1 vs. uniprot
Match: A0A383WFM7_TETOB (Uncharacterized protein n=2 Tax=Scenedesmaceae TaxID=3086 RepID=A0A383WFM7_TETOB)

HSP 1 Score: 91.7 bits (226), Expect = 6.810e-17
Identity = 57/190 (30.00%), Postives = 100/190 (52.63%), Query Frame = 1 
Query:  772 WKASKRSRAEVEEDGRKLSDYLALPPTDYSLLDPKMVTRLSDETFRMDGATVNIVGTKVQPVIFVKVEVQPESSLANIMVEKVELEGSEAVRSAGGSFNVTSSTVVSCAEIEGAGEVKLMELRTAADIEIELLIPN-ENFVPPGVLRRAGNFVMQRVVDIGLPQFTKFLKRDYTRWAEGDDSRGAVVSEG 1338
            + ASK+   ++ E  R L++Y+ALP + YS+LD + + R+ D TFR     +  +G  V+PVI V V V+       ++  K  L+GS+ V      F    + VV  +  E A    + ++ ++  IE+ + +P     +P   +   G+ VMQ  +++ +P+F + L +DY  WA GD+SR  + + G
Sbjct:   68 FSASKQLVKQITEAQRPLAEYMALPASQYSVLDARKIERIDDSTFRCFVGKLAFLGFSVEPVITVSVVVEERGCTIKLLSAK--LQGSKLVEDVNSKFTAQMTNVVRWSATEDAA---VKQISSSTSIEVVVQVPGWAGLIPVPSMEATGSKVMQTTLNLMVPRFLQQLGQDYALWASGDESRKPLDNGG 252
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BLAST of mRNA_C-linearis_contig10.574.1 vs. uniprot
Match: A0A0G4IAI8_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4IAI8_9ALVE)

HSP 1 Score: 92.0 bits (227), Expect = 2.370e-16
Identity = 63/220 (28.64%), Postives = 99/220 (45.00%), Query Frame = 1 
Query:  754 NGERIIWKASKRSRAEVEEDGRKLSDYLALPPTDYSLLDPKMVTRLSDETFRMDGATVNIVGTKVQPVIFVKVEVQPESSLANIMVEKVELEGSEAVRSAGGSFNVTSSTVVSCAEIEGAGEVK---LMELRTAA--------------DIEIELLIPNENFVPPGVLRRAGNFVMQRVVDIGLPQFTKFLKRDYTRWAEGDDSRGAVVSEGEALIEQGD 1362
            +G  I + A + +  EVEE  R L+DYL+LPPTDYS+L    + RL+D  F+           +V   +  +V V P    + I V+   ++         G        VV    +   G  K   L E R  A              +I++   +P    VP  ++   G+FV+QR+++I LP+F K L+ D+ RW+ G   R A+   G A +E  +
Sbjct:  108 HGVPITFHAIRTASIEVEEKNRTLTDYLSLPPTDYSILSEGSIERLNDTHFQYKLDPQKFFNVQVGSTLITEVVVDPSVPSSLIQVKDFSMDIRPLASRPSGKLLRELQEVVRSTNVNSYGLTKGINLQERRAGAGHGREAPPMIETKMEIKVSAKVPKRTLVPARIVEATGSFVLQRILNIILPRFLKQLRADFDRWSAGSADRSALSQGGLAELEMAE 327
[Close]
BLAST of mRNA_C-linearis_contig10.574.1 vs. uniprot
Match: A0A2V0NKA4_9CHLO (RAP release galactose-binding protein-like n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NKA4_9CHLO)

HSP 1 Score: 90.9 bits (224), Expect = 2.430e-16
Identity = 63/194 (32.47%), Postives = 101/194 (52.06%), Query Frame = 1 
Query:  772 WKASKRSRAEVEE-DGRKLSDYLALPPTDYSLLDPKMVTRLSDETFRMDGATVNIVGTKVQPVIFVKVEVQPESSLANIMVEKVELEGSEAVRSAGGSFNVTSSTVVSCAEIEGAGEVKLMELRTAADIEIELLIPNENFVPPGVLRRAGNFVMQRVVDIGLPQFTKFLKRDYTRWAEGDDSRGAVVSEGEALI 1350
            ++A+K++   V E   R L++Y+ALP + YS+LD + + R+ D TFR     +  +G  V+PVI V V VQ       ++    EL+GS  V      F    +  V+ A  + A +VK   +R+   IE+ + +P    +P   +  AG+ VM   V   +P+F   L++DY  WA GDDSR  +   GE ++
Sbjct:  104 FRATKQATQNVRELQTRSLAEYMALPASQYSVLDARKIERVDDSTFRCFVGQLAFLGFSVEPVITVSVTVQERGCTIRLL--SCELQGSRLVEDVNDKFTAQMTNEVTWAPTDDA-DVK--SIRSDTTIEVAVEVPGWFILPTPAVEAAGSGVMAATVAAMVPRFLGQLEKDYGLWASGDDSRRPL---GEGVL 289
[Close]
BLAST of mRNA_C-linearis_contig10.574.1 vs. uniprot
Match: A8HWY6_CHLRE (Predicted protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8HWY6_CHLRE)

HSP 1 Score: 90.1 bits (222), Expect = 3.290e-16
Identity = 68/209 (32.54%), Postives = 103/209 (49.28%), Query Frame = 1 
Query:  760 ERIIWKASKRSRAEVEEDGRKLSDYLALPPTDYSLLDPKMVTRLSDETFRMDGATVNIVGTKVQPVIFVKVEVQPESSLANIMVEKVELEGSEAVRSAGGSFNVTSSTVV----------SCAEIEGAGE---------VKLMELRTAADIEIELLIPN-ENFVPPGVLRRAGNFVMQRVVDIGLPQFTKFLKRDYTRWAEGDDSRGAV 1326
            +R  +KASK  R  + E  R LS+Y+ALP + YS+LD + + R+ D TF+     +      V+PVI V V V  E     I +   +L+GS  V      F+ T + VV          S +E E  GE             E+ +   I++ L +P   +F+P   +  AG+ VMQ V+++ +P+F   L+ DY  WA GD+SR  V
Sbjct:   63 QRATFKASKVGRQPIVEAQRPLSEYMALPASQYSVLDARRIERVDDTTFKCYVGELKFFSWSVEPVITVSVTV--EEGGCTIRLLGCKLQGSSFVEDINNKFSATMTNVVRYRDYVPEPSSDSESESDGEEGETGKQPAAARKEIVSDTTIQVCLEVPAWSSFLPVDSISSAGSGVMQNVLNVMVPRFLAQLRTDYVLWAAGDESRKPV 269
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.574.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8N2_ECTSI3.540e-10470.20Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CCG5_9STRA1.480e-4243.35Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6S9EBA2_HETAK5.410e-2633.67Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3BZT8_9VIRI6.850e-2132.09Hypothetical protein n=1 Tax=Prasinoderma singular... [more]
A0A1D2A9B2_AUXPR1.620e-2036.87Uncharacterized protein n=1 Tax=Auxenochlorella pr... [more]
A0A7S3C1G7_9VIRI2.890e-1731.47Hypothetical protein n=1 Tax=Prasinoderma singular... [more]
A0A383WFM7_TETOB6.810e-1730.00Uncharacterized protein n=2 Tax=Scenedesmaceae Tax... [more]
A0A0G4IAI8_9ALVE2.370e-1628.64Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A2V0NKA4_9CHLO2.430e-1632.47RAP release galactose-binding protein-like n=1 Tax... [more]
A8HWY6_CHLRE3.290e-1632.54Predicted protein n=1 Tax=Chlamydomonas reinhardti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:2514364..2519672 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score121.7
Seed ortholog evalue7.1e-25
Seed eggNOG ortholog554065.XP_005844487.1
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Protein of unknown function (DUF1997)
EggNOG OGs2CN26@1,2QTF3@2759,34I4H@3041,37NMJ@33090
Ec32 ortholog descriptionProtein of unknown function DUF1997
Ec32 orthologEc-22_002370.1
COG Functional cat.S
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Exons5
Model size2369
Cds size1095
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927342.4318135-UTR-C-linearis_contig10:2514363..25146361622927342.4318135-UTR-C-linearis_contig10:2514363..2514636Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2514364..2514636 +
1690879639.1908994-UTR-C-linearis_contig10:2514363..25146361690879639.1908994-UTR-C-linearis_contig10:2514363..2514636Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2514364..2514636 +
1622927342.504322-UTR-C-linearis_contig10:2518671..25196721622927342.504322-UTR-C-linearis_contig10:2518671..2519672Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2518672..2519672 +
1690879639.2433858-UTR-C-linearis_contig10:2518671..25196721690879639.2433858-UTR-C-linearis_contig10:2518671..2519672Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2518672..2519672 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927342.4414454-CDS-C-linearis_contig10:2514636..25151671622927342.4414454-CDS-C-linearis_contig10:2514636..2515167Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2514637..2515167 +
1690879639.2007942-CDS-C-linearis_contig10:2514636..25151671690879639.2007942-CDS-C-linearis_contig10:2514636..2515167Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2514637..2515167 +
1622927342.4541442-CDS-C-linearis_contig10:2517084..25171881622927342.4541442-CDS-C-linearis_contig10:2517084..2517188Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2517085..2517188 +
1690879639.2087693-CDS-C-linearis_contig10:2517084..25171881690879639.2087693-CDS-C-linearis_contig10:2517084..2517188Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2517085..2517188 +
1622927342.467142-CDS-C-linearis_contig10:2517507..25176681622927342.467142-CDS-C-linearis_contig10:2517507..2517668Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2517508..2517668 +
1690879639.2167065-CDS-C-linearis_contig10:2517507..25176681690879639.2167065-CDS-C-linearis_contig10:2517507..2517668Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2517508..2517668 +
1622927342.4792542-CDS-C-linearis_contig10:2517835..25180261622927342.4792542-CDS-C-linearis_contig10:2517835..2518026Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2517836..2518026 +
1690879639.226079-CDS-C-linearis_contig10:2517835..25180261690879639.226079-CDS-C-linearis_contig10:2517835..2518026Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2517836..2518026 +
1622927342.4914837-CDS-C-linearis_contig10:2518563..25186711622927342.4914837-CDS-C-linearis_contig10:2518563..2518671Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2518564..2518671 +
1690879639.2357855-CDS-C-linearis_contig10:2518563..25186711690879639.2357855-CDS-C-linearis_contig10:2518563..2518671Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2518564..2518671 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.574.1prot_C-linearis_contig10.574.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 2514637..2518671 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.574.1

>prot_C-linearis_contig10.574.1 ID=prot_C-linearis_contig10.574.1|Name=mRNA_C-linearis_contig10.574.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=365bp
MGASTPAAAFGCRRPSLFVAGLVFGFQLTHGFVHIGITARALSPPSRPCL
HRRVRSGAVSSMSAVSPKVQQQGDDEALLSSAVSHEGDGDGAEAALEHRE
SDVAEGDTASEKGQQAKRSRWPWRRSKKEEQQGNKQENSEQVEGRGEVEK
RAGLFTYDWDNGERIIWKASKRSRAEVEEDGRKLSDYLALPPTDYSLLDP
KMVTRLSDETFRMDGATVNIVGTKVQPVIFVKVEVQPESSLANIMVEKVE
LEGSEAVRSAGGSFNVTSSTVVSCAEIEGAGEVKLMELRTAADIEIELLI
PNENFVPPGVLRRAGNFVMQRVVDIGLPQFTKFLKRDYTRWAEGDDSRGA
VVSEGEALIEQGDG*
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mRNA from alignment at C-linearis_contig10:2514364..2519672+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.574.1 ID=mRNA_C-linearis_contig10.574.1|Name=mRNA_C-linearis_contig10.574.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5309bp|location=Sequence derived from alignment at C-linearis_contig10:2514364..2519672+ (Chordaria linearis ClinC8C monoicous)
GGAGCTGCATGCACGCGTGCTCGGGCCACACGAGTGTTAGCTCATCTGGA
GGGTGCACCTTTCTTAGAAAATGAGGTAAGGTCGGTCGACCAAGGCGTGG
CTTCGGAATTTGTCTGCGTAGACTGCTCGCCGGCACTCAGACGTAAGCTG
GCTCGGTCCTACATATCATACATCTACTGCTGCTGTCGTCTAGGTGTCAC
CCTCCGTCAGAACCCGTGTGCGGGGTTGAAACACAGCAAAGCAACGGTAG
CGTGGTCAGCTCGGCGTGGTGCTATGGGGGCAAGCACGCCTGCTGCGGCA
TTCGGTTGCCGTCGTCCCTCCCTGTTCGTCGCCGGCCTAGTGTTCGGGTT
CCAGCTCACCCATGGGTTCGTCCACATCGGGATCACCGCGCGCGCCTTAT
CTCCACCTTCGCGGCCATGCCTGCACCGCCGCGTCCGAAGTGGAGCGGTG
AGTTCCATGAGCGCCGTGTCTCCCAAAGTCCAGCAGCAGGGTGACGATGA
AGCGCTGCTATCTTCTGCTGTCTCCCACGAGGGTGACGGCGATGGTGCCG
AAGCAGCGCTAGAGCACCGGGAATCGGACGTAGCCGAGGGAGACACCGCC
AGCGAGAAAGGGCAGCAAGCAAAGCGTTCGAGGTGGCCTTGGCGAAGAAG
CAAGAAGGAGGAACAGCAAGGAAACAAGCAAGAAAACAGCGAGCAAGTGG
AGGGGAGGGGAGAGGTGGAGAAGAGGGCGGGCCTGTTCACGTACGATTGG
GACAACGGAGAGAGAATCATTTGGAAGGCATCCAAGAGGAGCAGGGCGGA
GGTGGTGAGTCAGGTTGCAGTCGCTTGCTGCATGGATGGGTGGTGCTTCG
GCGGTCTCGTTTTACCGTATGATAGTACAGGAAAACTTGTCTCCCACGAC
CAGCAGTGGGTGTGCTGCCTCCATAGTGGCGTCTCTCCTCCGCATTTTTC
TTCAATCACACCTAGAGAGACACCCACACAGAGACAGAGATTTTTCTGCA
AACTTTAAGGCGGCCCATCGACGATCCTAAAATCAGTATAAGCCTTATTT
TGGAGCAAATAGCATACTGTACCCCCCGGCTATACATCACGGAGCCTCAC
TTGAAATTAGTATAGGAATTCCGATCGACATGGTCTTTCTTCGAAGTTTC
AGAGGTATCCGTTGAAAATCAGGGGAGCTCGGAGTGTTTTTCGCCGATTT
GCTGAGTGTTCCGACCAGAGGAGGGATCGGGCAGACGCGGTAGGAGGGCT
GCTCTTACGCACAAAAGTGTGCAAAACTTGTCCCAAACCCTCAAGAGGGT
CAGTCACAGGCCGCTACCGACAAAAAAAATGTCACGAGTTGATCGTTTTG
TTGTTGTTGTGGGATGAGTTACTCTGTGCCCGCCAAAGCGACCGAAAGTC
CAACACGATGATCAACTTCACGATATCACCTCTCATAGGGCATGCCAGAG
GATAGTTCCTTCTGTCGGAAACAGCTAGCCTATCGTACTATCGGCGAGTA
GTGTGCAACCTGTTGCTTAAGTCCTTCGGTGAGGCTAGACGAGAGGGTAA
TCGCAATAGCAGAGGACCAGAGGGCATATGCGATAAGAACGCGGCGGAAT
TTTTCACGAATCCGTGAATTTCCTTTTCACGAATCACTGTTTTTTTTTCG
CTCGATGAGAACGGCCCTTAGTTATTCAGTTTCTCCCAAAACAGCCGGGC
TACATTCGCGTCAAGTCCGTTTTTTCATTGGGGCAAAAACTACGATGTGA
GGCTCCGGGGCGTTGATCCAAGCAATCACCCGAATTTCCCGAAAAAGCGA
CCGAAAAAATCATGACTCGTGCTCACGAAAACCTTCACAGCGCGGCTTAT
AGCTGTTTGCTGCTGCTGCTGTCCAGGACATGCGACGGCTCCTACACACC
ATATCAGTAGCCGCTCCAAGCGGCCTGAGCTGTTTTTGCTTGTGGGGGGC
GAGCTAGCTGATCTCCTGAAGAGCAAACTGTCGGTGCAACGTACGTTTGA
CAGACTTTTCTGAAGAGCGATTTTGCACCTTTGGAGAGGAAAAGCTCCGC
GTTCCCGACCGCATCAAACAACGGCGGAAGGCAAATCTGTAGAGAATAGT
AAACTCTTGAATCTGAATAACTAAGCTCATAGCACAGCCACAGCAGCAGC
GGAGGCGGCACAACGTGGAAAGTCGAGGCCTTGGGGACGGCCCGTGCGGT
GATTTTTCACGTACCCCAAAAAAAGCGACTCAAAAAATCATTCGGGCGTG
CGTTTTCACTGAGCCCCCAAACACGGAGCCACGTGCGATGGGCCGCCTTA
AGTTTGGTCGGCTACACGTACTTCCGCGTATGGGTCACCACCATGTTAGA
AGGCTTGCTCCCAGGGTCACATTTCGAAGCAATCCGCACTTCATTGTCAA
GCTGGCCGTAAATGAAGCCAGGTTGCTCAACAGCGAAAGGAAAGCCACGG
TAACTGGTGTTCCGAAGCTTTGTATCGATAAGCCAGTGTTTCCGATACAT
ACATACACTTCAGGACAGTCTAAATACATTTCGCGGTTTCCCCTCGAGCT
CGTCTAAGCGCGACTTGGCGTCCTTTTGTTTTGTAGGGTTGAGTAGCGTG
CGTTTCCAAAATACCTGGTCACGTCGAAACCTTGTTCTTCTTTGTTTATA
CATGTCTTTCTCTCTTTCTCTCTTCCACTCTGTCTCTGTTGCTGCGCCTC
CGAAATTTGCCCTTACAATAGGAGGAGGATGGCCGTAAGCTGAGCGACTA
CTTGGCGCTGCCCCCAACCGATTACTCACTTTTGGACCCCAAGATGGTTA
CTCGCTTGTCGGACGAAACGTTCAGGTGATCCAGACGTGAAATGTATGTC
ACACATATGCCCGGCTTGGGTGTTGGAGATAGACTTCTTTGCCTCACTTG
AAACTTAATGAAAATGTCAAAATTCTCCGGGCTGCTTGAATGATGAGCTG
TTTGATTCAGCGAAATCGATTGGTCCGTTGGCGCTGAACGAAGAAAGCAC
ACGTTTGTCTCAGTCTGGAGGCATCTCGTGACGACGTCTGCCCGAACTGT
GTGCTTGTATCGGTGTGCTGTCGTTAGTTTTTTCAGCAAAGCCGCTCCGT
TGCTGCCACCCTGTGTGTTGTGCTGTACCCCCACCAATGGGCAGAATGGA
TGGCGCCACTGTGAACATTGTGGGGACGAAGGTCCAACCCGTTATTTTCG
TCAAGGTGGAAGTTCAGCCAGAGAGTAGCTTGGCAAACATCATGGTGGAG
AAGGTCGAGTTGGAAGGATCCGAGGCCGTGCGGAGTGCCGGGGGGTCTTT
CAATGGTGAGGGTATTCGAAGATGCATTTGTTTGTGGTACATTGTAGGTT
CATCCTCGAGACAAGTGCCTGTGTACCTTCAAGTAAACATCTGCCCGACT
TAAAAATACAAAATGCAAGTGTTGCTTCTCGCCACTAACGAAAATCCGCT
CTCTTTGTGTCCCTACGGGCAGTTACGTCGAGCACGGTGGTGTCTTGCGC
CGAGATTGAGGGTGCGGGAGAGGTCAAACTCATGGAGCTACGCACTGCAG
CGGACATCGAGATCGAGCTGTTGATACCCAACGAAAATTTTGTTCCTCCT
GGCGTGCTGCGACGGGCAGGAAATTTTGTGATGCAGCGCGTGGTGGACAT
CGGCTTACCGCAGGTAAACTTGTCGATCACGGCGCGTAGCAAACTTCGCG
TCTTCGCATCCGCGTCGGGTGTCCAGCACTTAGGTCGTGTGTGTTGTGCC
AAACCCTCAAGTGTTGAGTGTATTTCCCAACATTGTGTGTGGACAAGTGC
CCGCCAATCTACCGCGACGTCCAGCACGAGTTTCTGGGTCAGGCACCAAG
GTTTTCCGTAGGCGAAGAGATGCTTCGTCTGAATAGGACTGGTTTGCTGG
ATTACCTCGTGTGCCGCTGTGCTATAATATCTCCGGACAAGTGTGCTTGT
TTGCAATTGGAAGTCCAATCTCGGCACCGAGCGGAACCCTGCCGGCACAA
GTGCAGGACCCGAGCCTACAGCTCTTGGTTGCGCCGCTTCGGGGTCCCAG
CGACAATTTGTGCCTGATTTTGTGGGATTGTGGTGGAGAGATAAAGCAGC
GAGTGCCTGTGATTGGTTCAGCGCTGGTTCTTGTTTTTTGACGCTTACCG
CACGCTTACCACCACCACCCCTCTTCGTTTTTTCGTTTTTTCCACCACAG
TTCACGAAGTTCCTGAAGAGGGATTACACACGATGGGCAGAAGGAGACGA
CTCCAGGGGTGCCGTGGTTTCAGAAGGAGAGGCTTTGATTGAGCAAGGCG
ACGGATAGTGCTGCTCGTTATTGTCGCCAGTCAGGGTCGACCTTGAGAAG
CTCCTGACTGGTGATTTCCGTTCCCTTTCATGAGAGAGCTCGCCGGGTTG
AGAGTTTTTTTGGTGGCTGGGATATTGAGATGTATATGGGTACCTACAGA
GCCGTATCTACATCGAATGCTTGTGCGGGATATGTTTTTGCTCCCATAAA
ATTTATGGTGATAAATTTTTACTATGAAGACACAGGCTACCCTCAGAAGA
TGGTAGCCCTGTCGTGGTAGTATTAACCCATTACCGGCGGCGGCTTAATT
CCTTTGGTGATATATTTAGGCAAGGAGAGAGGTTCACACAAGAGTGAGTG
CGACCCGAGGAAGAAGAGCACAAAGGTTCTCCGCATCTCGGTGCAGTAGA
TGCGTTGAAAGAGTTGAATCTCCGGTGGGTTTCTTTTTCTTGTCAACCCA
ACGGGTCGATAAGATACCCCACTTAAGATCCAATCTTGCTTTTTTTTTTA
TATTCTCGGCCATTGATGTTTTTTCTTAGCCTGCCTCCTCCTCTTACTCC
AACTAGCCACTAGGCTACCATCCGGGGTCACACAGGAGGGGATGTCTCCA
CCTACCTCCTACCTCCTGCGTTTTTTTTTTTGTTTCTCGCCCATTGATGT
TTTTTCGTAGCCTGCCTCCTCCTCTTCTCACATTCAGGGAAAATATAACT
TCCGGAAGAAGAGGTACAAAAACGTGATAACGCGATGAAATTAAACAAGT
TTTTGCGATACTGTATCCTGTATCGCTGTGCGTACGCCGCCGGTTTTCGG
GTGTTCTGCTGTGGTACACAGGATGGTCGCCAGCATGATGTCGGAATAGC
AGTCGAAGAGTCGATGTGTAAAAATTCCGTGTACACACTCCACTCTTATT
TTACTTTATTTTTGCCCCTCACATAGCGTGTAGAGGGGAGCGGAGGACTC
CAGACTATTTGTTTCCTGATTCTTTTATTTTTCTCGTATTTTATCGCTCT
GCTGACCCT
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Coding sequence (CDS) from alignment at C-linearis_contig10:2514364..2519672+

>mRNA_C-linearis_contig10.574.1 ID=mRNA_C-linearis_contig10.574.1|Name=mRNA_C-linearis_contig10.574.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2190bp|location=Sequence derived from alignment at C-linearis_contig10:2514364..2519672+ (Chordaria linearis ClinC8C monoicous)
ATGGGGGCAAGCACGCCTGCTGCGGCATTCGGTTGCCGTCGTCCCTCCCT
GTTCGTCGCCGGCCTAGTGTTCGGGTTCCAGCTCACCCATGGGTTCGTCC
ACATCGGGATCACCGCGCGCGCCTTATCTCCACCTTCGCGGCCATGCCTG
CACCGCCGCGTCCGAAGTGGAGCGGTGAGTTCCATGAGCGCCGTGTCTCC
CAAAGTCCAGCAGCAGGGTGACGATGAAGCGCTGCTATCTTCTGCTGTCT
CCCACGAGGGTGACGGCGATGGTGCCGAAGCAGCGCTAGAGCACCGGGAA
TCGGACGTAGCCGAGGGAGACACCGCCAGCGAGAAAGGGCAGCAAGCAAA
GCGTTCGAGGTGGCCTTGGCGAAGAAGCAAGAAGGAGGAACAGCAAGGAA
ACAAGCAAGAAAACAGCGAGCAAGTGGAGGGGAGGGGAGAGGTGGAGAAG
AGGGCGGGCCTGTTCACGTACGATTGGGACAACGGAGAGAGAATCATTTG
GAAGGCATCCAAGAGGAGCAGGGCGGAGGTGATGGGGGCAAGCACGCCTG
CTGCGGCATTCGGTTGCCGTCGTCCCTCCCTGTTCGTCGCCGGCCTAGTG
TTCGGGTTCCAGCTCACCCATGGGTTCGTCCACATCGGGATCACCGCGCG
CGCCTTATCTCCACCTTCGCGGCCATGCCTGCACCGCCGCGTCCGAAGTG
GAGCGGTGAGTTCCATGAGCGCCGTGTCTCCCAAAGTCCAGCAGCAGGGT
GACGATGAAGCGCTGCTATCTTCTGCTGTCTCCCACGAGGGTGACGGCGA
TGGTGCCGAAGCAGCGCTAGAGCACCGGGAATCGGACGTAGCCGAGGGAG
ACACCGCCAGCGAGAAAGGGCAGCAAGCAAAGCGTTCGAGGTGGCCTTGG
CGAAGAAGCAAGAAGGAGGAACAGCAAGGAAACAAGCAAGAAAACAGCGA
GCAAGTGGAGGGGAGGGGAGAGGTGGAGAAGAGGGCGGGCCTGTTCACGT
ACGATTGGGACAACGGAGAGAGAATCATTTGGAAGGCATCCAAGAGGAGC
AGGGCGGAGGTGGAGGAGGATGGCCGTAAGCTGAGCGACTACTTGGCGCT
GCCCCCAACCGATTACTCACTTTTGGACCCCAAGATGGTTACTCGCTTGT
CGGACGAAACGTTCAGGAGGAGGATGGCCGTAAGCTGAGCGACTACTTGG
CGCTGCCCCCAACCGATTACTCACTTTTGGACCCCAAGATGGTTACTCGC
TTGTCGGACGAAACGTTCAGAATGGATGGCGCCACTGTGAACATTGTGGG
GACGAAGGTCCAACCCGTTATTTTCGTCAAGGTGGAAGTTCAGCCAGAGA
GTAGCTTGGCAAACATCATGGTGGAGAAGGTCGAGTTGGAAGGATCCGAG
GCCGTGCGGAGTGCCGGGGGGTCTTTCAATGAATGGATGGCGCCACTGTG
AACATTGTGGGGACGAAGGTCCAACCCGTTATTTTCGTCAAGGTGGAAGT
TCAGCCAGAGAGTAGCTTGGCAAACATCATGGTGGAGAAGGTCGAGTTGG
AAGGATCCGAGGCCGTGCGGAGTGCCGGGGGGTCTTTCAATGTTACGTCG
AGCACGGTGGTGTCTTGCGCCGAGATTGAGGGTGCGGGAGAGGTCAAACT
CATGGAGCTACGCACTGCAGCGGACATCGAGATCGAGCTGTTGATACCCA
ACGAAAATTTTGTTCCTCCTGGCGTGCTGCGACGGGCAGGAAATTTTGTG
ATGCAGCGCGTGGTGGACATCGGCTTACCGCAGTTACGTCGAGCACGGTG
GTGTCTTGCGCCGAGATTGAGGGTGCGGGAGAGGTCAAACTCATGGAGCT
ACGCACTGCAGCGGACATCGAGATCGAGCTGTTGATACCCAACGAAAATT
TTGTTCCTCCTGGCGTGCTGCGACGGGCAGGAAATTTTGTGATGCAGCGC
GTGGTGGACATCGGCTTACCGCAGTTCACGAAGTTCCTGAAGAGGGATTA
CACACGATGGGCAGAAGGAGACGACTCCAGGGGTGCCGTGGTTTCAGAAG
GAGAGGCTTTGATTGAGCAAGGCGACGGATAGTTCACGAAGTTCCTGAAG
AGGGATTACACACGATGGGCAGAAGGAGACGACTCCAGGGGTGCCGTGGT
TTCAGAAGGAGAGGCTTTGATTGAGCAAGGCGACGGATAG
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