mRNA_C-linearis_contig10.572.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_C-linearis_contig10.572.1
Unique Name	mRNA_C-linearis_contig10.572.1
Type	mRNA
Organism	Chordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)

Homology

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BLAST of mRNA_C-linearis_contig10.572.1 vs. uniprot
Match: D7G8P0_ECTSI (Superoxide dismutase [Fe] n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8P0_ECTSI)

HSP 1 Score: 495 bits (1274), Expect = 2.310e-168
Identity = 249/282 (88.30%), Postives = 260/282 (92.20%), Query Frame = 2

Query:  761 FFVSVLLSFAACASAFVGTPVSIRASLKPSMVTMSASDSMGSLSRSDAIKTAAATAAAAGFVFSNSFPAMADGPYILPDLPYPYEALEPYIDAATMKFHHDKHHAAYVANANKAMAGKTAPSLLELQKDAIKAGTRNAGGGHYNHCLFWNTLCNHDSSGSPSPALAKAIDEAFGSMDEMKAQFATTAAGVFGSGWAWLGCTKDGKLAITGTPNQDNPLMDGAACTAMVPILGLDVWEHAYYLKYQNRRPEYITAFWNVVNWAVVSENYEMYASQGKGVPVVG 1606
            F  S++LS AACASAFVGTPVS RASLK S V MS SDSMGSLSR DA+K AAA+AAAAGFVFSNSFPA ADGPY LPDLPY Y+ALEPYIDAATMKFHHDKHHAAYV NANKA+AGKTAPSLL+LQKDAIK G RNAGGGHYNHCLFWNTLCNH+SSG+PS  LAKAIDEAFGSMDEMKAQF TTAAGVFGSGWAWLGCT DGKLAITGTPNQDNPLM+GAA TAMVPILGLDVWEHAYYLKYQNRRPEYI+AFWNVVNWAVVSENYEMYASQGKGVPV G
Sbjct:   19 FTTSLVLSGAACASAFVGTPVSTRASLKSSAVRMSVSDSMGSLSRGDALKAAAASAAAAGFVFSNSFPAFADGPYNLPDLPYSYDALEPYIDAATMKFHHDKHHAAYVGNANKALAGKTAPSLLDLQKDAIKTGVRNAGGGHYNHCLFWNTLCNHESSGAPSGTLAKAIDEAFGSMDEMKAQFGTTAAGVFGSGWAWLGCTPDGKLAITGTPNQDNPLMEGAAGTAMVPILGLDVWEHAYYLKYQNRRPEYISAFWNVVNWAVVSENYEMYASQGKGVPVQG 300

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BLAST of mRNA_C-linearis_contig10.572.1 vs. uniprot
Match: A0A835ZFH9_9STRA (Superoxide dismutase [Fe] n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFH9_9STRA)

HSP 1 Score: 358 bits (920), Expect = 1.480e-115
Identity = 192/282 (68.09%), Postives = 212/282 (75.18%), Query Frame = 2

Query:  767 VSVLLSFAACASAFVGTPVSIRASLKPSMVTMSASDSMGSLSRSDAIKTAAATAAAAGFVF-SNSFPAMA-DGPYILPDLPYPYEALEPYIDAATMKFHHDKHHAAYVANANKAMAGKTAPSLLELQKDAIKAGTRNAGGGHYNHCLFWNTLCNHDSSGSPSPALAKAIDEAFGSMDEMKAQFATTAAGVFGSGWAWLGCTKDGKLAITGTPNQDNPLMDGAACTAMVPILGLDVWEHAYYLKYQNRRPEYITAFWNVVNWAVVSENYEMYASQGKGVPVVG 1606
            V+V+L+ A   SAFV            S + M+A    G +SR  AI+T AAT  A G  F +NS PA A DGPY+LPDLPY YEALEP+IDAATMKFHHDKHH AY+ NANKA+AGK A S+L+LQK AIKAG RNAGGGHYNH LFW TL     SG PS AL  AID +FGS D MK +F   AAGVFGSGWAWLG TKDGKL IT TPNQDNPLM+GAACTAM+PILGLDVWEHAYYLKYQNRRPEYI AFWNVVNWA VSE YE YA + +GVPV G
Sbjct:    6 VAVVLACAGFGSAFVAPG---------SKMVMTAE---GGVSRRQAIQTGAATVTATGLAFLTNSVPARAEDGPYVLPDLPYAYEALEPHIDAATMKFHHDKHHLAYITNANKAVAGKEAVSILDLQKGAIKAGVRNAGGGHYNHSLFWTTLAPAADSGKPSAALTMAIDASFGSFDAMKEKFGAAAAGVFGSGWAWLGVTKDGKLDITTTPNQDNPLMEGAACTAMIPILGLDVWEHAYYLKYQNRRPEYIAAFWNVVNWAKVSEYYEQYALKQEGVPVQG 275

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BLAST of mRNA_C-linearis_contig10.572.1 vs. uniprot
Match: A0A7S3XQ28_HETAK (Superoxide dismutase [Fe] n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQ28_HETAK)

HSP 1 Score: 311 bits (797), Expect = 2.710e-97
Identity = 174/286 (60.84%), Postives = 195/286 (68.18%), Query Frame = 2

Query:  767 VSVLLSFAACASAFVGTPVSIRASLKPSMVTMSASDSMGSLSRSDAIKT--AAATAAAAGFVFSNSFPAMADGPYILPDLPYPYEALEPYIDAATMKFHHDKHHAAYVANANKAMAGKTAP-SLLELQKDAIKAG--TRNAGGGHYNHCLFWNTLCNHDSSGSPSPALAKAIDEAFGSMDEMKAQFATTAAGVFGSGWAWLGCTKDGKLAITGTPNQDNPLMDGAACT-AMVPILGLDVWEHAYYLKYQNRRPEYITAFWNVVNWAVVSENYEMYASQGKGVPVVG 1606
            V++ L   AC SAF                  + S SM   SR D IK   AAA  +AA  +   + PA ADGPY LPDLPY Y+ALEP ID+ATMKFHHDKHHA YVAN NKA+AGK    S+L+LQ  A+KAG   RN+GGGHYNHC FWN +     SGSPS ALA AIDEAFGSMD MK +F   A G FGSGWAWLG   DGKL I GTPNQDNPLM G     AM PILGLDVWEHAYYL+Y+NRR EY+T FW +VNWA VS+NYE YAS+G GVPV G
Sbjct:    4 VALFLCALACVSAF-----------------QTQSMSMTESSRRDFIKATGAAALGSAAFSLAGGNSPAYADGPYTLPDLPYAYDALEPIIDSATMKFHHDKHHATYVANVNKALAGKDGVGSILDLQAGALKAGGAVRNSGGGHYNHCFFWNCMGPEKESGSPSAALATAIDEAFGSMDAMKEKFNAAATGQFGSGWAWLGVKADGKLGICGTPNQDNPLMKGIGKDLAMKPILGLDVWEHAYYLQYKNRRLEYVTNFWKIVNWAQVSDNYESYASKGMGVPVEG 272

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BLAST of mRNA_C-linearis_contig10.572.1 vs. uniprot
Match: A0A8J5XSB1_DIALT (Superoxide dismutase n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XSB1_DIALT)

HSP 1 Score: 295 bits (754), Expect = 5.300e-91
Identity = 149/214 (69.63%), Postives = 168/214 (78.50%), Query Frame = 2

Query:  962 PAMADGPYILPDLPYPYEALEPYIDAATMKFHHDKHHAAYVANANKAMAGKTAPSLLELQKDAIKAG--TRNAGGGHYNHCLFWNTLCNHDSSGSPSPALAKAIDEAFGSMDEMKAQFATTAAGVFGSGWAWLGCTKDGKLAITGTPNQDNPLMDGAACTAMVPILGLDVWEHAYYLKYQNRRPEYITAFWNVVNWAVVSENYEMYASQGKGVP 1597
            PA+A+  Y LPDLPY YEALEPYIDAATM+FHHDKHHA YVAN NKA+ GK A S+LELQKDAI AG   RN+GGGHYNH LFW  +      G P+ ALA  IDEAFGS D+ K +F+  +AG FGSGW WLG   DGKLAI  TPNQDNPLMDG   T MVPILGLDVWEHAYYLKYQNRRPEYI++++NVVNW  V+ NYE YAS+G+GVP
Sbjct:   56 PALAE--YTLPDLPYDYEALEPYIDAATMRFHHDKHHATYVANVNKALEGKPAKSILELQKDAISAGGAVRNSGGGHYNHALFWEEMGPATGKG-PTGALAAKIDEAFGSFDKFKEEFSAKSAGRFGSGWCWLGVKPDGKLAIDTTPNQDNPLMDGGCETKMVPILGLDVWEHAYYLKYQNRRPEYISSWFNVVNWEKVAFNYEKYASKGQGVP 266

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BLAST of mRNA_C-linearis_contig10.572.1 vs. uniprot
Match: A0A7S1DDM0_HEMAN (Superoxide dismutase n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DDM0_HEMAN)

HSP 1 Score: 285 bits (729), Expect = 5.940e-87
Identity = 141/211 (66.82%), Postives = 160/211 (75.83%), Query Frame = 2

Query:  977 GPYILPDLPYPYEALEPYIDAATMKFHHDKHHAAYVANANKAMAGKTAPSLLELQKDAIKA-GTRNAGGGHYNHCLFWNTLCNHDSSGSPSPALAKAIDEAFGSMDEMKAQFATTAAGVFGSGWAWLGCTKDGKLAITGTPNQDNPLMDGAACTAMVPILGLDVWEHAYYLKYQNRRPEYITAFWNVVNWAVVSENYEMYASQGKGVPVVG 1606
            GPY LP LPY Y ALEP ID  TMK HHDKHH AYV N NKA+ GK APS+  LQKDA+K+   RN GGGHYNH LFW+TL    SSG PS AL KAIDEAFGS D+M   F+  AA  FGSGWAWLG + +GKL I  TPNQDNPLM+GA C  M+P+LGLDVWEHAYYLKYQN+RPEYI AF++V+NW VVS+NY  +A +G  VPV G
Sbjct:   82 GPYKLPPLPYDYAALEPAIDEMTMKIHHDKHHQAYVNNVNKALEGKDAPSITALQKDAMKSPALRNNGGGHYNHALFWSTLSPVASSGKPSAALQKAIDEAFGSTDKMVEAFSGCAAKRFGSGWAWLGVSPEGKLVIDSTPNQDNPLMEGAGCAKMIPVLGLDVWEHAYYLKYQNKRPEYIKAFFSVINWGVVSKNYADFAVKGLPVPVQG 292

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BLAST of mRNA_C-linearis_contig10.572.1 vs. uniprot
Match: A0A7S0L727_9EUKA (Superoxide dismutase n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L727_9EUKA)

HSP 1 Score: 283 bits (725), Expect = 2.630e-86
Identity = 147/239 (61.51%), Postives = 174/239 (72.80%), Query Frame = 2

Query:  887 LSRSDAIKTAAATAAAAGFVFSNSFPAMA-DGPYILPDLPYPYEALEPYIDAATMKFHHDKHHAAYVANANKAMAGKTAPSLLELQKDAIKAGTRNAGGGHYNHCLFWNTLCNHDSSGSPSPALAKAIDEAFGSMDEMKAQFATTAAGVFGSGWAWLGCTKDGKLAITGTPNQDNPLMDGAACTAMVPILGLDVWEHAYYLKYQNRRPEYITAFWNVVNWAVVSENYEMYASQGKGVPV 1600
            ++R +A+    A A AA  + + S PA+A D  + LP LPY Y+ALEP++DAATMKFHHD HH AY+ N NKAMAGK + SL+ L   A  A   NAGGGHYNHCLFW T+      G+P+  LA  ID AFGS DE KA+F+  AAGVFGSGWAWL   KDG + I  TPNQDNPLMDGA    +VPILG+DVWEHAYYLKYQNRRPEYITAF+NVVNWA V E Y+ YAS+G+ VP+
Sbjct:   60 ITRRNALNLGVAAAVAAPLLGAQS-PALAEDAMFSLPPLPYAYDALEPHVDAATMKFHHDFHHQAYINNLNKAMAGKPSASLVSLMPGAKAAKLNNAGGGHYNHCLFWTTM-GPKCGGAPTGTLATKIDAAFGSYDEFKAKFSAAAAGVFGSGWAWLAVAKDGSVQIVTTPNQDNPLMDGATEPGLVPILGIDVWEHAYYLKYQNRRPEYITAFYNVVNWAKVGEYYDEYASKGEPVPL 296

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BLAST of mRNA_C-linearis_contig10.572.1 vs. uniprot
Match: L1K0Q9_GUITC (Superoxide dismutase n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1K0Q9_GUITC)

HSP 1 Score: 274 bits (701), Expect = 4.930e-83
Identity = 153/278 (55.04%), Postives = 190/278 (68.35%), Query Frame = 2

Query:  782 SFAACASAFVGTPVSIRASLKPSMVTMSASDSMGSLSRSDAIKTAAATAAAAGFVFSNSFP--AMADGPYILPDLPYPYEALEPYIDAATMKFHHDKHHAAYVANANKAMAGKTAPSLLELQKDAIKAGT--RNAGGGHYNHCLFWNTLCNHDSSGSPSPALAKAIDEAFGSMDEMKAQFATTAAGVFGSGWAWLGCTKDGKLAITGTPNQDNPLMDGAACTAMVPILGLDVWEHAYYLKYQNRRPEYITAFWNVVNWAVVSENYEMYASQGKGVPVV 1603
            +F+A A + +  P S+R  L+   VTMS++D        + +   AA    AG + S   P  + A+G + LP LPY Y++LEPYID  TMK HHDKH  AY+ N NKA+ GK A  L ++QK+AIKAG   RN GGG+YNH LF+  +    +SG PS AL KAID +FGSMD+MK +F   AA  FGSGWAWLG T +GKLAIT TPNQDNPLM+G     M+P+LGLDVWEHAYYLKYQNRRPEYIT +W+VVNW  VS NYE +A++G  V VV
Sbjct:   12 AFSAFAPS-LSAPKSLR--LRQESVTMSSND--------NPMSRRAAVVVTAGLLGSFLAPKESKAEGAFSLPALPYDYKSLEPYIDEETMKLHHDKHFNAYLTNLNKALEGKPAAKLTDIQKEAIKAGPAIRNNGGGYYNHALFFKEMGPAANSGKPSAALQKAIDASFGSMDKMKEEFNAAAAKRFGSGWAWLGVTPEGKLAITSTPNQDNPLMEGCEGQKMIPVLGLDVWEHAYYLKYQNRRPEYITNWWSVVNWEAVSNNYEKFAAKGIPVEVV 278

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BLAST of mRNA_C-linearis_contig10.572.1 vs. uniprot
Match: A0A7S3WV96_9SPIT (Superoxide dismutase n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3WV96_9SPIT)

HSP 1 Score: 272 bits (696), Expect = 5.810e-83
Identity = 139/214 (64.95%), Postives = 160/214 (74.77%), Query Frame = 2

Query:  962 PAMADGP-YILPDLPYPYEALEPYIDAATMKFHHDKHHAAYVANANKAMAGKTAPSLLELQKDAIKAGTRNAGGGHYNHCLFWNTLCNHDSSGSPSPALAKAIDEAFGSMDEMKAQFATTAAGVFGSGWAWLGCTKDGKLAITGTPNQDNPLMDGAACTAMVPILGLDVWEHAYYLKYQNRRPEYITAFWNVVNWAVVSENYEMYASQGKGVPV 1600
            PA+AD P + LP LPY Y+ALEP+IDAATMKFHHD HH AY+ N NKAMAGK A SL+ L  DA K    NAGGGHYNHCLFW T+    + G+PS  LA+ I++AFGS D+ K+QF+T AAGVFGSGWAWL  TKDG + IT TPNQDNPLMD       +PILGLDVWEHAYYLKYQNRRPEYI+AF+NV+NW  V E Y   AS   G P+
Sbjct:   24 PALADDPMFTLPPLPYAYDALEPHIDAATMKFHHDFHHQAYITNLNKAMAGKPAASLVSLMPDAKKNKLNNAGGGHYNHCLFWTTM-GPKAGGTPSGVLAEKINDAFGSFDDFKSQFSTAAAGVFGSGWAWLVVTKDGSVKITSTPNQDNPLMDS---NGEIPILGLDVWEHAYYLKYQNRRPEYISAFFNVINWDKVGEYYAQAAS---GKPI 230

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BLAST of mRNA_C-linearis_contig10.572.1 vs. uniprot
Match: A0A7S3RIY5_EMIHU (Superoxide dismutase n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3RIY5_EMIHU)

HSP 1 Score: 270 bits (689), Expect = 1.340e-81
Identity = 144/242 (59.50%), Postives = 165/242 (68.18%), Query Frame = 2

Query:  884 SLSRSDAIKTAAATAAAAGFVFSNSFPAMA--DGPYILPDLPYPYEALEPYIDAATMKFHHDKHHAAYVANANKAMAGKTAPSLLELQKDAIKAGTRNAGGGHYNHCLFWNTLCNHDSSGSPSPALAKAIDEAFGSMDEMKAQFATTAAGVFGSGWAWLGCTKDGKLAITGTPNQDNPLMDGAACTAMVPILGLDVWEHAYYLKYQNRRPEYITAFWNVVNWAVVSENYEMYASQGKGVPVV 1603
            S+ R  A+   AA  AA G     S PA A  D  + LP LPY Y+ALEP+IDAATMKFHHD HH AY+ N NKAMAGK    L+ L   A  A   NAGGGHYNHC+FW+TL    + G PS AL  A+ +AFGS D+ KAQF+  AAGVFGSGWAWL   KDG + I  TPNQDNPLMDGA    ++PILG+DVWEHAYYLKYQNRRPEYI AF+NVVNWA V E    YA+   G P+ 
Sbjct:   21 SVDRRGALGLGAAACAALG----TSMPAFAADDPMFTLPPLPYAYDALEPHIDAATMKFHHDFHHQAYITNLNKAMAGKPKADLVSLMPGAKAAKLNNAGGGHYNHCMFWSTL-GPKAGGEPSGALGDAMAKAFGSYDDFKAQFSAAAAGVFGSGWAWLAVAKDGSVKIVTTPNQDNPLMDGATEAGLIPILGIDVWEHAYYLKYQNRRPEYIAAFYNVVNWAKVGE---YYATAAAGKPIA 254

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BLAST of mRNA_C-linearis_contig10.572.1 vs. uniprot
Match: A0A7S3APP8_9EUKA (Superoxide dismutase n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3APP8_9EUKA)

HSP 1 Score: 266 bits (680), Expect = 3.890e-80
Identity = 141/240 (58.75%), Postives = 165/240 (68.75%), Query Frame = 2

Query:  890 SRSDAIKTAAATAAAAGFVFSNSFPAMA---DGPYILPDLPYPYEALEPYIDAATMKFHHDKHHAAYVANANKAMAGKTAPSLLELQKDAIKAGTRNAGGGHYNHCLFWNTLCNHDSSGSPSPALAKAIDEAFGSMDEMKAQFATTAAGVFGSGWAWLGCTKDGKLAITGTPNQDNPLMDGAACTAMVPILGLDVWEHAYYLKYQNRRPEYITAFWNVVNWAVVSENYEMYASQGKGVPV 1600
            SR D +   AA +AA      N+F   A   DG + LP LPY Y ALEP+IDAATMKFHHD HH AY+ N NKAMAGK A SL+ L   A  A   NAGGGHYNHC+FW T+      G+P+  LA+ +D AFGS DE K+QF+  AAGVFGSGWAWL  T DG + I  TPNQDNPLM+GA    ++PI+G+DVWEHAYYLKYQNRRPEYI AF+NVV+W  V E YE  AS   G P+
Sbjct:   34 SRRDVLGLVAAASAA------NAFQGAAVAQDGMFTLPPLPYDYAALEPHIDAATMKFHHDFHHQAYINNLNKAMAGKDAVSLVSLMPGAKAAKLNNAGGGHYNHCMFW-TIMGKGGGGTPTGVLAEKMDAAFGSYDEFKSQFSAAAAGVFGSGWAWLAVTSDGSVKIVTTPNQDNPLMEGATEAGLIPIMGIDVWEHAYYLKYQNRRPEYIAAFYNVVDWTKVGEYYETAAS---GKPI 263

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig10.572.1 vs. uniprot

BLAST of mRNA_C-linearis_contig10.572.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G8P0_ECTSI	2.310e-168	88.30	Superoxide dismutase [Fe] n=1 Tax=Ectocarpus silic...	[more]
A0A835ZFH9_9STRA	1.480e-115	68.09	Superoxide dismutase [Fe] n=1 Tax=Tribonema minus ...	[more]
A0A7S3XQ28_HETAK	2.710e-97	60.84	Superoxide dismutase [Fe] n=2 Tax=Heterosigma akas...	[more]
A0A8J5XSB1_DIALT	5.300e-91	69.63	Superoxide dismutase n=1 Tax=Diacronema lutheri Ta...	[more]
A0A7S1DDM0_HEMAN	5.940e-87	66.82	Superoxide dismutase n=2 Tax=Hemiselmis andersenii...	[more]
A0A7S0L727_9EUKA	2.630e-86	61.51	Superoxide dismutase n=1 Tax=Coccolithus braarudii...	[more]
L1K0Q9_GUITC	4.930e-83	55.04	Superoxide dismutase n=1 Tax=Guillardia theta (str...	[more]
A0A7S3WV96_9SPIT	5.810e-83	64.95	Superoxide dismutase n=1 Tax=Strombidinopsis acumi...	[more]
A0A7S3RIY5_EMIHU	1.340e-81	59.50	Superoxide dismutase n=2 Tax=Emiliania huxleyi Tax...	[more]
A0A7S3APP8_9EUKA	3.890e-80	58.75	Superoxide dismutase n=1 Tax=Haptolina ericina Tax...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-linearis_contig10	contig	C-linearis_contig10:2486611..2491635 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	499.2
Seed ortholog evalue	1.3e-138
Seed eggNOG ortholog	2880.D7G8P0
KEGG ko	ko:K04564
KEGG Pathway	ko04013,ko04068,ko04146,ko04211,ko04212,ko04213,ko05016,map04013,map04068,map04146,map04211,map04212,map04213,map05016
Hectar predicted targeting category	chloroplast
EggNOG free text desc.	oxidoreductase activity, acting on superoxide radicals as acceptor
EggNOG OGs	COG0605@1,KOG0876@2759
Ec32 ortholog description	manganese superoxide dismutase
Ec32 ortholog	Ec-22_002450.1
EC	1.15.1.1
COG Functional cat.	P
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko01000
Exons	8
Model size	2244
Cds size	870
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig10.572.1	prot_C-linearis_contig10.572.1	Chordaria linearis ClinC8C monoicous	polypeptide	C-linearis_contig10 2487350..2491000 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927342.074115-UTR-C-linearis_contig10:2486610..2487349	1622927342.074115-UTR-C-linearis_contig10:2486610..2487349	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig10 2486611..2487349 +
1690879638.8817503-UTR-C-linearis_contig10:2486610..2487349	1690879638.8817503-UTR-C-linearis_contig10:2486610..2487349	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig10 2486611..2487349 +
1622927342.1663823-UTR-C-linearis_contig10:2491000..2491635	1622927342.1663823-UTR-C-linearis_contig10:2491000..2491635	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig10 2491001..2491635 +
1690879638.982447-UTR-C-linearis_contig10:2491000..2491635	1690879638.982447-UTR-C-linearis_contig10:2491000..2491635	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig10 2491001..2491635 +

The following CDS feature(s) are a part of this mRNA:

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-linearis_contig10:2486611..2491635+
coding sequence from alignment at C-linearis_contig10:2486611..2491635+

protein sequence of mRNA_C-linearis_contig10.572.1

>prot_C-linearis_contig10.572.1 ID=prot_C-linearis_contig10.572.1|Name=mRNA_C-linearis_contig10.572.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=290bp
MLTYFPWFFVSVLLSFAACASAFVGTPVSIRASLKPSMVTMSASDSMGSL
SRSDAIKTAAATAAAAGFVFSNSFPAMADGPYILPDLPYPYEALEPYIDA
ATMKFHHDKHHAAYVANANKAMAGKTAPSLLELQKDAIKAGTRNAGGGHY
NHCLFWNTLCNHDSSGSPSPALAKAIDEAFGSMDEMKAQFATTAAGVFGS
GWAWLGCTKDGKLAITGTPNQDNPLMDGAACTAMVPILGLDVWEHAYYLK
YQNRRPEYITAFWNVVNWAVVSENYEMYASQGKGVPVVG*

mRNA from alignment at C-linearis_contig10:2486611..2491635+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-linearis_contig10.572.1 ID=mRNA_C-linearis_contig10.572.1|Name=mRNA_C-linearis_contig10.572.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5025bp|location=Sequence derived from alignment at C-linearis_contig10:2486611..2491635+ (Chordaria linearis ClinC8C monoicous)
TCGCTTCCGCTAGGCTTTATCCATCATGAAGTTCACCGCATCCCTCGTCC
TCAGCAGCGCAGGTAGATCGAGTTTGTGTCCCTGCCTTCGGACGGACGTG
CCATGGAACAAAAATGCAAAAGGAAGGCGCGAGATGAGTGCTCTCTTCTC
GCTTCAACGCGCGCGCAAGAGCCAGCAGAGCTCTCTTCCTTTGCGTTTTG
CGATGGCCTTGTGCATGTTATCATGCGATGCAATGCTCGCCCGGTGTACA
CTCTTTGCCCGCGTGCTGCCATCCACTCTGTTGACCCTTCGAGAATGTTG
TGGGATGCAGCGCTGGTAGGAGTCGAAAAAAGCGCAGGTGTGTAAGGGTC
GTCCTCGACTATCTATTGCTTTTGTACCTTTCCAGAGGAGAGCTCGTTCA
TGTTTCTTGGTTGTCTCGCTCAGTCTCCCCTCTTGCGATCCTCGGGTTGG
GCAACCGTGTCTCGGATCCAACACAATCAACATTTTATGTCCCTATGTAG
TGTTGCAGTGCTGTCTGAGTTTCCCCCACCTTTTGCGTCTCCTTATTTTG
CGTTGCCCTTGAACGAATCCTGGCGGCCCTCGTCGCTCAAAAACTCGGTG
TTACAGAGGTAAGTGTGTCACGCGACCACCCCCCAAAAATGCTGGTGTAT
GTTATAACTAAAAAACAATTGAGAATGTCTCCAGACTCTGGCTGTTGGTG
GCCACAGCCCTCTCTCGCCGCCCTCGGCTGGATACAATCATGCTGACATA
TTTTCCCTGGTTTTTTGTTTCTGTTTTGTTGTCCTTTGCAGCATGCGCGT
CCGCCTTCGTGGGCACTCCGGTGTCGATCCGGGCGTCGCTCAAGCCGTCC
ATGGTGACCATGAGCGCTTCCGACTCGATGGGCTCGCTCAGTAGGAGTGA
CGCGATCAAGGTACATACATGGGTAACTGTATACATGCAAACGACTAAGG
AGCCAACCACGACCCTCTCTTGCCGATTATTTGTTGTTGTTGTTGTTGTT
GTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTCGTTGTCGTTGTCGTCGT
TGTCGCTTTGTATGTACGAACAGCGAAATTGGTGTGTTCGCTTGAGATGC
CTGATGCGTACGCGGCCCCTCCACCCACCCACTCCAGCCCTTATTGCCCC
CCCCGCCCTCGTTGCCGCCTCACCCTTCTCGTTGCACCAGACCGCCGCCG
CCACTGCTGCCGCCGCGGGCTTCGTGTTCTCGAACTCGTTCCCCGCAATG
GCCGACGGGCCCTACATTCTCCCGGACCTCCCGTACCCGTACGAGGCCCT
CGAGCCCTACATCGACGCAGCAACCATGAAGGTGTGTATTTTTATGATAG
CAGGATACTGAAGTATATACTTCGTATATGTGTACTCGTGATCCGCGCGC
GGTCCGTTTCGGCAGAGATTGTTGTTTAGTGGGTTTTGGCCTGCATTGTT
TTTACGCGAAAGAGCCAAGCCGCCCTCCGGCCTGGAGGGTATGCTAGAAT
GCTACTGCTGTATGCTGCAAAGGATTTGCTCATTGGCGTTTGTTCAAAGG
AAGAGGGTGCGCGCGTGACACGACAGGAGTCGCAGCGGTGGCCCGGTCGT
TTTGGCACGATGCAAGAGCTCTGGTTCTGCCTTCTCACCCCACTCCCCAC
CACCCCCCTCTTTGCCTCCTCGACCTTGCCGCGCCGTCATCGTCGCACGC
TTCTACTGCTGGCCGTGTGACTCCCATGTCTGACGCTGCTGTGTGTACCG
CGAACGTCCACGCTTGACTCGACTCGACTCGACGCTATCAAACGCGTGGA
CGGGCGAACGGACGGTACGTGACGGCTCTCGGTGTTGCTGGCCGTGTTCT
TCCTCTCCCTCTCTCTCTATGCTCGCCTCTGCATTCCGCGCGGTGTGGGG
CATGACAGTTCCACCACGACAAGCACCACGCCGCCTACGTGGCCAACGCC
AACAAGGTTTGTTGGTATTGATATCGATATCTACATCTACTGGGGTTGCG
GGCTGTTGTTGATATCTAGTGGGGCTGCTGCATCTCTCGCAGTCGCCGAC
CTTTAGGGTGTGTGCCTGGACTCTATGTAGCCCATGGCCATGAGCCAAGA
CGAGGAAAAGGTGTCTAGCAAGAAGTAGACGCGCAGAACGCCAAAACGCA
GAGGTACAAAATGCATTATAGTGTCATTGAGCTTAGCCGGGGGGGCGTTC
AAGGTGCTCGATGCCGAGGCCCTTGGTTATAGTCAAAGGAGCACGTGTAG
GGTTTTACGTAAATACGAAGTATGAATCGTGTTGAACAACTTGCATCAAG
TACGAATATAAACAACGTGAAGGCCCGTTGATTTTTGACATGATGTGCAG
GCTATGGCCGGCAAGACGGCCCCTTCTCTGCTCGAGCTCCAGAAGGACGC
CATCAAGGCCGGCACCCGCAACGCGGGCGGTGGTAAGACCAACAAAAAGT
TGTCCCTGAGGGTGGTGGTGATGCATGTATGCCTCATTCCTTTCGTGTAC
AGCCCGCGACTCAACTCGGGGTAAAAGCAGTGTTTGGTGTCACCCTACTC
TGTTGCACTATATTAGTCTGCTGGGCGTGTTGTCGGTCCATGTTTCTCTT
AATTGCAGCTCATCATTGTTACTGTGCCCCCTACCCCCCCCCACTTCTAC
CCCCCCCTCACGTGTACCAACCCCGACTCCGTCTTTTGTTTTTGGCTGCA
GGCCACTACAACCACTGCCTCTTCTGGAACACCCTGTGCAACCACGACAG
CAGCGGCTCTCCTTCCCCTGCGGTACGAAGGCAACGGTTGATCATCGGTC
ACTGATTCGTACCGTTCGCTGCAAGCACTTGTGATCTTGTCATGAGCGGT
GTGGTATGCGCAGAGGCCCAATCCAATGCTTGCTGGTCCTGAGGAGCCTA
GTGACTCGGGGGTGAAGTTCATCTGTTTCCTCCCCCCCCCCCCTTCCTTG
TCGTCGACGTGATGAATTCAATCCTGGAACAGTATCTCTCGACGCTCACC
GCATTTCCTCCGCCTCCCTTGCGTCCCGTCCCGTCCCGGCTTAACCATCT
TCCTGGTGCTCCTTCAAAAATCGCGGTAAAATCCGCGGGGGGAAACAAAC
AAACCAATAAATAGCTGGCGAAGGCGATCGACGAGGCGTTCGGGTCAATG
GACGAGATGAAAGCCCAGTTCGCCACCACCGCCGCTGGCGTCTTCGGCTC
GGGATGGGCCTGGCTAGGCTGCACCAAGGACGGAAAGCTGGCCATCACCG
GCACCCCCAACCAAGGTGAGATCGGCGAATTGGGAGATAGTCGCATTGTA
GCGGCGGCGGGTAGGCTTCGCTGGTTGTTGAGAAGTATGTATGTTGTTGT
GTTATCATTGGATGAGGTTTCCGGTACCTGCAAAACGTACACACCCCATA
CTAGCTGGGCGAGTATCCGTGCCGAGACCATGTATGCTTGGGCTTCCAAG
AACGAGACGGACTTGGGGATGAGCCCCCCCCCCCCGGATTTTCATTTCGC
TTCACCGCTCCCGGTGCCCCCTTGCGACACAACACGCGTGAACCCGGCAG
ACAACCCCCTAATGGACGGCGCCGCCTGCACGGCTATGGTGCCCATCCTC
GGCCTCGACGTGTGGGAGCACGCCTACTACCTGAAGTACCAGAACCGCAG
GCCCGAGTACATCACCGCCTTCTGGAACGTCGTCAACTGGGCGGTGGTAC
GTCATATTTTGTTGTATGTACGAGCCGTAGAGGCAGCGTATAGGGCGGTG
TGTGGTGCTGTTTTGGTTCGGTGCCATGTGTGTAGTTCGCACACGGCTGC
ACGCTTGTTCGACCTGGTTTGTGTGTGGTGTCTCTTCGGTCGGGAAAAAC
AGAAGCAGCAAGGTCACGTGTCGTCGCGACGATGGAGGCCGGACAAACGG
TTCTTGGCTGGCTGGCTGTGCACATTGATAGTACAGCAATTTATTTGGAA
CACCGAATATCCCTGTGTGTTGCCCTCACGGCGACTTCGTCAGCGGCAAC
GGTTGCACGGTGCCGATATCGTATTCATCGCACCAATCTTGGTTATCTAG
TAGTATCTAACATGGTGATGATGCTGTGCTTGCTATACGCTCCTGACTTT
TAACTGGCGTGTTTTTTGTCCAATTATGTGTGAGCGCGACCGCAGCGGTC
TTCCCCGGCGTGTGCGGCGTGCAAACAATAACAAAACTCCGCCCTCCTCG
ACTCTCAAAACTTGGTATCCCCATTTCCCCCTCTGCGTGCCCCCTCCTTT
CTCCACTTGCGCCTGCCCTGCCCTGCCCTGCCCCGGCAACCTCATCTCTT
TTGTCCGCCGGTGCTGTGTTTGTTGTTAAGGTGTCGGAGAACTACGAGAT
GTACGCATCCCAGGGCAAGGGGGTGCCGGTCGTGGGCTAATTAGGTCCTC
CTAGGCCGAACAGACGGGACAGGCGGGACTGAAACGGCACCCTTGGTTGA
TCTTTGTATCTGCCCCATGTCGCCTGTTGGTATTTAGGGCCGGGTCAAAC
TTTTGCTCGGTCCGGTCTTCTTGGCGCTCCAAGGATACAGCGGGTGTCAT
AGTTGCAATAGGCAGTTTGTGCAAAGAGTAGAGTCGTATGACAGACGAAT
GAATGCTGAGTCCCCGGCCTGCCCGCTGACATTCCAAGCTAAGCTAGACG
TGCGTTTGGGAGGCGGCGGTGGTTTGGAAGCATTTTGTGCTGTGCGGTCA
CGCGATGGCTTATGACAACATAATCGTAGACAGGCTACAGTAACGACACG
ATTTTAACTCCGAATCGCCGTTTTCCATCGGCTGCGCAAGATTTACCGCA
GTAAAATAGTCATTTTGCCGCTCGAGGTGATATCGGCAGCAGAAAGTTGC
TCCCAGTTGTTTTCGGTGTGCCTGCACTTTGCACTCACATGTTTAGAGAC
CGTATTATCTAAACAGCAATCCCACGCGAACGGCCAACCAAACCAAAGCC
GGTTTTCGCCACACGAAACGTTTCTGTTTTTCCTGACTTGCTCTCTTTTC
CTAGCTCTAAACAGTTGTGACACAC

Coding sequence (CDS) from alignment at C-linearis_contig10:2486611..2491635+

>mRNA_C-linearis_contig10.572.1 ID=mRNA_C-linearis_contig10.572.1|Name=mRNA_C-linearis_contig10.572.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1740bp|location=Sequence derived from alignment at C-linearis_contig10:2486611..2491635+ (Chordaria linearis ClinC8C monoicous)
ATGCTGACATATTTTCCCTGGTTTTTTGTTTCTGTTTTGTTGTCCTTTGC
AGCATGCGCGTCCGCCTTCGTGGGCACTCCGGTGTCGATCCGGGCGTCGC
TCAAGCCGTCCATGGTGACCATGAGCGCTTCCGACTCGATGGGCTCGCTC
AGTAGGAGTGACGCGATCAAGATGCTGACATATTTTCCCTGGTTTTTTGT
TTCTGTTTTGTTGTCCTTTGCAGCATGCGCGTCCGCCTTCGTGGGCACTC
CGGTGTCGATCCGGGCGTCGCTCAAGCCGTCCATGGTGACCATGAGCGCT
TCCGACTCGATGGGCTCGCTCAGTAGGAGTGACGCGATCAAGACCGCCGC
CGCCACTGCTGCCGCCGCGGGCTTCGTGTTCTCGAACTCGTTCCCCGCAA
TGGCCGACGGGCCCTACATTCTCCCGGACCTCCCGTACCCGTACGAGGCC
CTCGAGCCCTACATCGACGCAGCAACCATGAAGACCGCCGCCGCCACTGC
TGCCGCCGCGGGCTTCGTGTTCTCGAACTCGTTCCCCGCAATGGCCGACG
GGCCCTACATTCTCCCGGACCTCCCGTACCCGTACGAGGCCCTCGAGCCC
TACATCGACGCAGCAACCATGAAGTTCCACCACGACAAGCACCACGCCGC
CTACGTGGCCAACGCCAACAAGTTCCACCACGACAAGCACCACGCCGCCT
ACGTGGCCAACGCCAACAAGGCTATGGCCGGCAAGACGGCCCCTTCTCTG
CTCGAGCTCCAGAAGGACGCCATCAAGGCCGGCACCCGCAACGCGGGCGG
TGGCTATGGCCGGCAAGACGGCCCCTTCTCTGCTCGAGCTCCAGAAGGAC
GCCATCAAGGCCGGCACCCGCAACGCGGGCGGTGGCCACTACAACCACTG
CCTCTTCTGGAACACCCTGTGCAACCACGACAGCAGCGGCTCTCCTTCCC
CTGCGGCCACTACAACCACTGCCTCTTCTGGAACACCCTGTGCAACCACG
ACAGCAGCGGCTCTCCTTCCCCTGCGCTGGCGAAGGCGATCGACGAGGCG
TTCGGGTCAATGGACGAGATGAAAGCCCAGTTCGCCACCACCGCCGCTGG
CGTCTTCGGCTCGGGATGGGCCTGGCTAGGCTGCACCAAGGACGGAAAGC
TGGCCATCACCGGCACCCCCAACCAAGCTGGCGAAGGCGATCGACGAGGC
GTTCGGGTCAATGGACGAGATGAAAGCCCAGTTCGCCACCACCGCCGCTG
GCGTCTTCGGCTCGGGATGGGCCTGGCTAGGCTGCACCAAGGACGGAAAG
CTGGCCATCACCGGCACCCCCAACCAAGACAACCCCCTAATGGACGGCGC
CGCCTGCACGGCTATGGTGCCCATCCTCGGCCTCGACGTGTGGGAGCACG
CCTACTACCTGAAGTACCAGAACCGCAGGCCCGAGTACATCACCGCCTTC
TGGAACGTCGTCAACTGGGCGGTGACAACCCCCTAATGGACGGCGCCGCC
TGCACGGCTATGGTGCCCATCCTCGGCCTCGACGTGTGGGAGCACGCCTA
CTACCTGAAGTACCAGAACCGCAGGCCCGAGTACATCACCGCCTTCTGGA
ACGTCGTCAACTGGGCGGTGGTGTCGGAGAACTACGAGATGTACGCATCC
CAGGGCAAGGGGGTGCCGGTCGTGGGCTAAGTGTCGGAGAACTACGAGAT
GTACGCATCCCAGGGCAAGGGGGTGCCGGTCGTGGGCTAA