mRNA_C-linearis_contig10.571.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.571.1
Unique NamemRNA_C-linearis_contig10.571.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.571.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:2485816..2486499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size685
Cds size684
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927326.0688446-CDS-C-linearis_contig10:2485815..24864991622927326.0688446-CDS-C-linearis_contig10:2485815..2486499Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2485816..2486499 +
1690879627.813923-CDS-C-linearis_contig10:2485815..24864991690879627.813923-CDS-C-linearis_contig10:2485815..2486499Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2485816..2486499 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.571.1prot_C-linearis_contig10.571.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 2485816..2486499 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.571.1

>prot_C-linearis_contig10.571.1 ID=prot_C-linearis_contig10.571.1|Name=mRNA_C-linearis_contig10.571.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=228bp
PDVAPASPAYPAPVPTAAATGIGINPPPPPQVAFLPTFTSWTPPPSLRSL
LSSTTAAEETAPGKADPVDGPAPASSPLEEEAAQHVGILLLLPRGPPKLQ
LLGAAAVRVFAAAALPCLQYPARLDASRSREEWAECAERCREGSRCSVPA
AVGGTKAEVWGTSPWARRSSTPATAAVAELDRPIYLSHAKIPTGQPDHDV
AGLDIPSTPCTVHQRARAKSERVKPKT*
back to top

mRNA from alignment at C-linearis_contig10:2485816..2486499+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.571.1 ID=mRNA_C-linearis_contig10.571.1|Name=mRNA_C-linearis_contig10.571.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=684bp|location=Sequence derived from alignment at C-linearis_contig10:2485816..2486499+ (Chordaria linearis ClinC8C monoicous)
CCCGATGTCGCCCCTGCCTCGCCCGCGTACCCTGCCCCTGTCCCTACCGC
TGCGGCCACCGGGATCGGGATCAATCCCCCGCCGCCGCCCCAGGTAGCGT
TCCTTCCTACTTTTACTTCCTGGACGCCGCCCCCTTCTTTGCGCTCCTTG
CTCTCCTCCACCACTGCTGCCGAGGAGACCGCGCCAGGCAAGGCAGACCC
AGTAGACGGCCCTGCTCCGGCATCCTCGCCGCTGGAGGAAGAAGCAGCGC
AACATGTGGGGATACTCCTGCTGCTGCCGCGCGGGCCGCCCAAGTTGCAG
TTGTTGGGTGCTGCTGCTGTTCGGGTGTTCGCCGCTGCTGCACTGCCTTG
TCTGCAGTACCCTGCTAGGCTCGATGCCTCCCGTTCCCGCGAGGAATGGG
CGGAATGTGCGGAGCGTTGCCGGGAGGGAAGCCGTTGCAGTGTGCCCGCG
GCGGTGGGTGGAACGAAGGCTGAGGTTTGGGGGACTTCTCCATGGGCAAG
AAGAAGTAGCACCCCCGCTACTGCTGCGGTTGCGGAGCTAGATCGACCCA
TTTACCTTTCTCACGCCAAAATTCCCACGGGCCAGCCTGACCACGACGTT
GCAGGTCTCGATATCCCTTCCACACCATGTACCGTCCACCAACGAGCACG
AGCAAAGAGCGAAAGAGTGAAACCTAAAACCTAG
back to top

Coding sequence (CDS) from alignment at C-linearis_contig10:2485816..2486499+

>mRNA_C-linearis_contig10.571.1 ID=mRNA_C-linearis_contig10.571.1|Name=mRNA_C-linearis_contig10.571.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1368bp|location=Sequence derived from alignment at C-linearis_contig10:2485816..2486499+ (Chordaria linearis ClinC8C monoicous)
CCCGATGTCGCCCCTGCCTCGCCCGCGTACCCTGCCCCTGTCCCTACCGC
TGCGGCCACCGGGATCGGGATCAATCCCCCGCCGCCGCCCCAGGTAGCGT
TCCTTCCTACTTTTACTTCCTGGACGCCGCCCCCTTCTTTGCGCTCCTTG
CTCTCCTCCACCACTGCTGCCGAGGAGACCGCGCCAGGCAAGGCAGACCC
AGTAGACGGCCCTGCTCCGGCATCCTCGCCGCTGGAGGAAGAAGCAGCGC
AACATGTGGGGATACTCCTGCTGCTGCCGCGCGGGCCGCCCAAGTTGCAG
TTGTTGGGTGCTGCTGCTGTTCGGGTGTTCGCCGCTGCTGCACTGCCTTG
TCTGCAGTACCCTGCTAGGCTCGATGCCTCCCGTTCCCGCGAGGAATGGG
CGGAATGTGCGGAGCGTTGCCGGGAGGGAAGCCGTTGCAGTGTGCCCGCG
GCGGTGGGTGGAACGAAGGCTGAGGTTTGGGGGACTTCTCCATGGGCAAG
AAGAAGTAGCACCCCCGCTACTGCTGCGGTTGCGGAGCTAGATCGACCCA
TTTACCTTTCTCACGCCAAAATTCCCACGGGCCAGCCTGACCACGACGTT
GCAGGTCTCGATATCCCTTCCACACCATGTACCGTCCACCAACGAGCACG
AGCAAAGAGCGAAAGAGTGAAACCTAAAACCTAGCCCGATGTCGCCCCTG
CCTCGCCCGCGTACCCTGCCCCTGTCCCTACCGCTGCGGCCACCGGGATC
GGGATCAATCCCCCGCCGCCGCCCCAGGTAGCGTTCCTTCCTACTTTTAC
TTCCTGGACGCCGCCCCCTTCTTTGCGCTCCTTGCTCTCCTCCACCACTG
CTGCCGAGGAGACCGCGCCAGGCAAGGCAGACCCAGTAGACGGCCCTGCT
CCGGCATCCTCGCCGCTGGAGGAAGAAGCAGCGCAACATGTGGGGATACT
CCTGCTGCTGCCGCGCGGGCCGCCCAAGTTGCAGTTGTTGGGTGCTGCTG
CTGTTCGGGTGTTCGCCGCTGCTGCACTGCCTTGTCTGCAGTACCCTGCT
AGGCTCGATGCCTCCCGTTCCCGCGAGGAATGGGCGGAATGTGCGGAGCG
TTGCCGGGAGGGAAGCCGTTGCAGTGTGCCCGCGGCGGTGGGTGGAACGA
AGGCTGAGGTTTGGGGGACTTCTCCATGGGCAAGAAGAAGTAGCACCCCC
GCTACTGCTGCGGTTGCGGAGCTAGATCGACCCATTTACCTTTCTCACGC
CAAAATTCCCACGGGCCAGCCTGACCACGACGTTGCAGGTCTCGATATCC
CTTCCACACCATGTACCGTCCACCAACGAGCACGAGCAAAGAGCGAAAGA
GTGAAACCTAAAACCTAG
back to top