mRNA_C-linearis_contig10.570.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.570.1
Unique NamemRNA_C-linearis_contig10.570.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.570.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:2470536..2472356 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-22_002420.1
Exons4
Model size567
Cds size492
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.570.1prot_C-linearis_contig10.570.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 2470611..2472356 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927323.997038-UTR-C-linearis_contig10:2470535..24706101622927323.997038-UTR-C-linearis_contig10:2470535..2470610Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2470536..2470610 +
1690879626.561934-UTR-C-linearis_contig10:2470535..24706101690879626.561934-UTR-C-linearis_contig10:2470535..2470610Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2470536..2470610 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927324.0109868-CDS-C-linearis_contig10:2470610..24706241622927324.0109868-CDS-C-linearis_contig10:2470610..2470624Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2470611..2470624 +
1690879626.5733736-CDS-C-linearis_contig10:2470610..24706241690879626.5733736-CDS-C-linearis_contig10:2470610..2470624Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2470611..2470624 +
1622927324.0255964-CDS-C-linearis_contig10:2471430..24716831622927324.0255964-CDS-C-linearis_contig10:2471430..2471683Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2471431..2471683 +
1690879626.584732-CDS-C-linearis_contig10:2471430..24716831690879626.584732-CDS-C-linearis_contig10:2471430..2471683Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2471431..2471683 +
1622927324.0391684-CDS-C-linearis_contig10:2471893..24720191622927324.0391684-CDS-C-linearis_contig10:2471893..2472019Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2471894..2472019 +
1690879626.5975332-CDS-C-linearis_contig10:2471893..24720191690879626.5975332-CDS-C-linearis_contig10:2471893..2472019Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2471894..2472019 +
1622927324.0545218-CDS-C-linearis_contig10:2472257..24723561622927324.0545218-CDS-C-linearis_contig10:2472257..2472356Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2472258..2472356 +
1690879626.6061425-CDS-C-linearis_contig10:2472257..24723561690879626.6061425-CDS-C-linearis_contig10:2472257..2472356Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2472258..2472356 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.570.1

>prot_C-linearis_contig10.570.1 ID=prot_C-linearis_contig10.570.1|Name=mRNA_C-linearis_contig10.570.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=164bp
MVSESEGKMARFISKVCPVSRAAAAEMAERLLATEAEGAVYKVLLWGATG
VMGAAVLITRVAWARARGMRTRTIAALTNKEKANQAKIETARAACLEWQI
ASIKDREKISMINEELAREKRESASAQAQVQVERSEGLRLQMAYGQLREQ
YSKEVKALQQEVG*
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mRNA from alignment at C-linearis_contig10:2470536..2472356+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.570.1 ID=mRNA_C-linearis_contig10.570.1|Name=mRNA_C-linearis_contig10.570.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1821bp|location=Sequence derived from alignment at C-linearis_contig10:2470536..2472356+ (Chordaria linearis ClinC8C monoicous)
GGTACGTGGAGAGGCGCTGCATATAGCCCTCTCGATAGAGAGGACACCGC
GACACCGGAGGAAAGTTGACGACTGATGGTCTCCGAGAGGTGAGAGAAGG
ATACATGTAGGGCCGCATCATACAAGGTACACGGCGGCTGAAGCAGAGCA
TTCGCGTTCGTCGTTCGCGAGACACTGATCTGTAGTGCACACATTCGCTT
TCGGGCAGTGGTTGTGCAATGACTTTTGGGTGGTGGTATTGGTGTTGGAT
CTACAGTATGCTGTCGCCGAGGCAAACTTGGTCTCTGCAGTCTACCTTGC
GAGGCCAAGGCGGTTCTTGTCTGTGTACAGAGTAGTAGCACCGAACCCGT
TGGTCTTAACTAGTAGGTCGTGAGACTATGGGGTTTGGCACCTTCTTTCG
ATATGCACATGCCCAAACCCAAGGCGAGCAAACGATACCCTGCACATGAT
ACCAGAGTGCAAGCAGACTCCAGTGGCTGTTGAAAAATGGGGGTAGTCTG
TACTAAGCTGCATTTTTTACCGTTCGCATGTGCTGGCTGGTTAATAGGCT
GTCTGAAAATACTGTAGCTGAGTCAACCCCCACCCAAACTAAACTGCGGT
GACTACTGATACTTTTCCACCCAATCCGAAACCAAAAACAAACCGCGTGC
TGACTTCTACATACGAAGACATATTGTAGACTATCTACGTAGTTGTTCAC
GCTCGCCTTCACTGGAGCGTGCCATAACCGTGTCTGACGGCTGCAGCAGC
GCCATACGAAAAGCATTGTACCTCGGAGCATTACTTAGGTAGGCATTAAA
TTTCCAGCGACCGGGAGGGTGCATCACGTCCTTCTTTGCCGCTGAACACA
AGTTCGAAACGGACAATGTCCCGACCTGCCCCGCTGTCTACTCAGCGAGG
GCAAAATGGCCAGGTTCATCTCAAAAGTCTGCCCCGTTTCTCGGGCAGCG
GCGGCGGAGATGGCGGAGCGGCTGCTTGCTACTGAGGCAGAAGGTGCCGT
CTACAAGGTGCTACTTTGGGGTGCCACTGGAGTAATGGGCGCCGCTGTCC
TCATCACGCGGGTCGCCTGGGCGCGGGCTAGGGGCATGCGCACGAGAACC
ATCGCAGCACTGACGAACAAAGAAAAAGCGAATCAAGCCAAGATCGAGGT
GAGTGCGCCTCCTGCGCAAACACTGTCGTGGAGTATAGAGCACACACAAC
ACCAAAGTGTCAGAGGATGTGCCACCCAACAAGAATGGACCACGTCAATA
CGCATGTCGATGTTGTCGCGTCACGATTTTTCCCCGCGTGACGAACCCAC
GCGCCCATCGCCGTACCACACTTCGCTGTTTGCGCTCGCTGTATTTGTTT
GTTTGCAGACTGCGCGCGCTGCATGCCTGGAGTGGCAGATAGCTTCTATC
AAGGATCGCGAGAAGATTTCAATGATAAACGAGGAGCTGGCCCGGGAGAA
GAGGGAGTCGGCTTCAGCTCAAGCCCAGGTTCAGGTAAGTTCGGCATAGG
GTTCGTCTACATGATGAACGAATTCGCGGCACGCAGGAAGAACAGGTGTG
CGACAAAACTACATACAGCAGTGTTTCGAAGAGGTCGGCAGCCACCGCTA
AGACTCTGGGCTTCAGCGCATTTCTTGAATTGTGCGTCTTCTCATTAAGC
GCAAGAAACATTTTGACCCACCCTGACCACCCGAGAAAACGCGTCATCAT
GCCGTTATTCGTTATTCTACAGGTGGAGCGATCCGAAGGCCTTCGGCTTC
AGATGGCCTACGGCCAGCTAAGGGAGCAATACTCGAAGGAAGTGAAAGCC
CTGCAGCAGGAGGTAGGTTGA
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Coding sequence (CDS) from alignment at C-linearis_contig10:2470536..2472356+

>mRNA_C-linearis_contig10.570.1 ID=mRNA_C-linearis_contig10.570.1|Name=mRNA_C-linearis_contig10.570.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=984bp|location=Sequence derived from alignment at C-linearis_contig10:2470536..2472356+ (Chordaria linearis ClinC8C monoicous)
ATGGTCTCCGAGAGATGGTCTCCGAGAGCGAGGGCAAAATGGCCAGGTTC
ATCTCAAAAGTCTGCCCCGTTTCTCGGGCAGCGGCGGCGGAGATGGCGGA
GCGGCTGCTTGCTACTGAGGCAGAAGGTGCCGTCTACAAGGTGCTACTTT
GGGGTGCCACTGGAGTAATGGGCGCCGCTGTCCTCATCACGCGGGTCGCC
TGGGCGCGGGCTAGGGGCATGCGCACGAGAACCATCGCAGCACTGACGAA
CAAAGAAAAAGCGAATCAAGCCAAGATCGAGCGAGGGCAAAATGGCCAGG
TTCATCTCAAAAGTCTGCCCCGTTTCTCGGGCAGCGGCGGCGGAGATGGC
GGAGCGGCTGCTTGCTACTGAGGCAGAAGGTGCCGTCTACAAGGTGCTAC
TTTGGGGTGCCACTGGAGTAATGGGCGCCGCTGTCCTCATCACGCGGGTC
GCCTGGGCGCGGGCTAGGGGCATGCGCACGAGAACCATCGCAGCACTGAC
GAACAAAGAAAAAGCGAATCAAGCCAAGATCGAGACTGCGCGCGCTGCAT
GCCTGGAGTGGCAGATAGCTTCTATCAAGGATCGCGAGAAGATTTCAATG
ATAAACGAGGAGCTGGCCCGGGAGAAGAGGGAGTCGGCTTCAGCTCAAGC
CCAGGTTCAGACTGCGCGCGCTGCATGCCTGGAGTGGCAGATAGCTTCTA
TCAAGGATCGCGAGAAGATTTCAATGATAAACGAGGAGCTGGCCCGGGAG
AAGAGGGAGTCGGCTTCAGCTCAAGCCCAGGTTCAGGTGGAGCGATCCGA
AGGCCTTCGGCTTCAGATGGCCTACGGCCAGCTAAGGGAGCAATACTCGA
AGGAAGTGAAAGCCCTGCAGCAGGAGGTAGGTTGAGTGGAGCGATCCGAA
GGCCTTCGGCTTCAGATGGCCTACGGCCAGCTAAGGGAGCAATACTCGAA
GGAAGTGAAAGCCCTGCAGCAGGAGGTAGGTTGA
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