mRNA_C-linearis_contig10.567.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.567.1
Unique NamemRNA_C-linearis_contig10.567.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig10.567.1 vs. uniprot
Match: A0A6H5KVX3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVX3_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 1.630e-12
Identity = 42/90 (46.67%), Postives = 52/90 (57.78%), Query Frame = 1 
Query:   40 RGSKRCLASPPVVVITIVPLGEQEGWPTPRCLSRSSGRAGGRPEQQHSLQQMGLVHERATPGVVRPMQRLPKRSARPSLGRTEHAGIPVG 309
            RG +R  A+P            +EG   PR  +  S R GGR EQQ   +QM L HERA PGV+R +QRLP+R A P LGR+EH  + VG
Sbjct:   35 RGGRRPAATPSPHTF------REEGCSVPRRAANPSRRQGGRAEQQQ--RQMALAHERAAPGVLRRVQRLPERRALPCLGRSEHTAVSVG 116
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BLAST of mRNA_C-linearis_contig10.567.1 vs. uniprot
Match: D7G8N4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8N4_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 1.470e-10
Identity = 41/90 (45.56%), Postives = 50/90 (55.56%), Query Frame = 1 
Query:   40 RGSKRCLASPPVVVITIVPLGEQEGWPTPRCLSRSSGRAGGRPEQQHSLQQMGLVHERATPGVVRPMQRLPKRSARPSLGRTEHAGIPVG 309
            RG +R  A+P            +EG    R  +  S R G R EQQ   +QM L HERA PGV+R +QRLP+R A P LGR+EH  I VG
Sbjct:   30 RGGRRPAATPSPHTF------REEGCSVSRRAANPSRRQGSRAEQQQ--RQMALAHERAAPGVLRRVQRLPERRALPCLGRSEHTAISVG 111
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.567.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KVX3_9PHAE1.630e-1246.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8N4_ECTSI1.470e-1045.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:2454327..2455256 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size320
Cds size288
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.567.1prot_C-linearis_contig10.567.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 2454327..2455225 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927341.749961-CDS-C-linearis_contig10:2454326..24545921622927341.749961-CDS-C-linearis_contig10:2454326..2454592Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2454327..2454592 -
1690879638.6575885-CDS-C-linearis_contig10:2454326..24545921690879638.6575885-CDS-C-linearis_contig10:2454326..2454592Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2454327..2454592 -
1622927341.7656338-CDS-C-linearis_contig10:2455203..24552251622927341.7656338-CDS-C-linearis_contig10:2455203..2455225Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2455204..2455225 -
1690879638.6662858-CDS-C-linearis_contig10:2455203..24552251690879638.6662858-CDS-C-linearis_contig10:2455203..2455225Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2455204..2455225 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927341.778677-UTR-C-linearis_contig10:2455225..24552561622927341.778677-UTR-C-linearis_contig10:2455225..2455256Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2455226..2455256 -
1690879638.6770158-UTR-C-linearis_contig10:2455225..24552561690879638.6770158-UTR-C-linearis_contig10:2455225..2455256Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2455226..2455256 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.567.1

>prot_C-linearis_contig10.567.1 ID=prot_C-linearis_contig10.567.1|Name=mRNA_C-linearis_contig10.567.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=96bp
MRVEEARGASPPPPSSSSPSSRSANKKDGPRLAAFRVLLGEREGDQNSST
RCSRWVSSTKELRLVSFDLCNACRSALPVRVWVGQNTPGSLWAAVA
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mRNA from alignment at C-linearis_contig10:2454327..2455256-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.567.1 ID=mRNA_C-linearis_contig10.567.1|Name=mRNA_C-linearis_contig10.567.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=930bp|location=Sequence derived from alignment at C-linearis_contig10:2454327..2455256- (Chordaria linearis ClinC8C monoicous)
CTACGGCGAGACAAAGGGAGAGCGTAAAAAGATGAGAGTAGAGGAAGCAA
GAGGTCAGTGACGGTATACTCAGAGATTGTAACGGTGGTCCTTGTGTATC
CAGAGAGAACCCGTCTAGTGCTCCGCATATTTTTGGGCTGCGTACCGAAC
GTGCTGCCGCAGTTTACAGCACGCGAGAGCAAAAGAGAGGGCGGTTTCCA
AATCACAGGCTATTGCAACTGCCGGATTACCAAAAGCCCTAGCGTGACGC
GTCGGGAGGGCATCGCTTGTTTGAAATGTCGGTGGGATGTTGGACGTTTG
AGTTTGAATTCAAAAATTTCCAATCAGAAAAATTGTGTACCCACCGGGGA
AACATGCTGGATTGCGGGATCTGTAGACTTGGTTTGTTGGGTGCCAGGAA
ACTCACGTGCTTTCGCGTTTACTCCTGTGATTATTTGGACGGGTGTGGCG
TGTTGCATGCCGCCGAAAAAGCTGCTGAACATCGGCAAGAAGGTAGTAGC
ATCCGTGCCGGAGCTGAACCACCGAGCGGTAATCGGTAGCAGCATTCATG
CCGGAGCTGAACCACTGAGCGGTAATCGGGCGATCAACCACATACCGACA
TGATGCTGACGCCCCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGCCTGCAGGTGCCTCGCCTCCCCCCCCGTCGTCGTCATCACCAT
CGTCCCGCTCGGCGAACAAGAAGGATGGCCCACGCCTCGCTGCCTTTCGC
GTTCTTCTGGGCGAGCGGGAGGGCGACCAGAACAGCAGCACTCGCTGCAG
CAGATGGGTCTCGTCCACGAAAGAGCTACGCCTGGTGTCGTTCGACCTAT
GCAACGCTTGCCGAAGCGCTCTGCCCGTCCGAGTCTGGGTAGGACAGAAC
ACGCCGGGATCCCTGTGGGCAGCAGTAGCA
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Coding sequence (CDS) from alignment at C-linearis_contig10:2454327..2455256-

>mRNA_C-linearis_contig10.567.1 ID=mRNA_C-linearis_contig10.567.1|Name=mRNA_C-linearis_contig10.567.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at C-linearis_contig10:2454327..2455256- (Chordaria linearis ClinC8C monoicous)
ATGAGAGTAGAGGAAGCAAGAGATGAGAGTAGAGGAAGCAAGAGGTGCCT
CGCCTCCCCCCCCGTCGTCGTCATCACCATCGTCCCGCTCGGCGAACAAG
AAGGATGGCCCACGCCTCGCTGCCTTTCGCGTTCTTCTGGGCGAGCGGGA
GGGCGACCAGAACAGCAGCACTCGCTGCAGCAGATGGGTCTCGTCCACGA
AAGAGCTACGCCTGGTGTCGTTCGACCTATGCAACGCTTGCCGAAGCGCT
CTGCCCGTCCGAGTCTGGGTAGGACAGAACACGCCGGGATCCCTGTGGGC
AGCAGTAGCAGTGCCTCGCCTCCCCCCCCGTCGTCGTCATCACCATCGTC
CCGCTCGGCGAACAAGAAGGATGGCCCACGCCTCGCTGCCTTTCGCGTTC
TTCTGGGCGAGCGGGAGGGCGACCAGAACAGCAGCACTCGCTGCAGCAGA
TGGGTCTCGTCCACGAAAGAGCTACGCCTGGTGTCGTTCGACCTATGCAA
CGCTTGCCGAAGCGCTCTGCCCGTCCGAGTCTGGGTAGGACAGAACACGC
CGGGATCCCTGTGGGCAGCAGTAGCA
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