mRNA_C-linearis_contig10.555.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig10.555.1 vs. uniprot
Match: A0A6H5JJK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK0_9PHAE) HSP 1 Score: 266 bits (681), Expect = 6.470e-79 Identity = 139/222 (62.61%), Postives = 167/222 (75.23%), Query Frame = 1 Query: 1 GKDQLQVLFEGIAREDRMVPTVQHRFNSVDDVIQHLTLVVWADTRPRLVVLDDVWEREVVDTLQPTGLQLLVDTRRSSVVAAGGGRTDVGGMERAQAHELLKKKSCAVALPETEAGQVAEACGWHALTLAIAGTLRSVTSSPNSAPTWQALHSEIVRKKATARGPRMETDVGDDPTKLLLLPVLDLSLDSLGKDEQHLFLGLVVLARGVLAPVPMLASIWQN 666 G+DQLQ LFE + R + RFNS +++IQ+LT++V D PRLVVLDDVWER VVDTL+PTGL+LLV TR SVVA GGRT VG M+ +A ELLK +S A+ALP+TEA QVA ACGWHALTLAIAG+LR V PNSA TW+ L SE+ + K + RGP+M+ D+GDDPTK L PVL+LSL+SLG D + LFL L+VLARGV AP PMLASIW Sbjct: 296 GEDQLQALFEALTRGAFPAAKLPPRFNSPEEIIQYLTVLVAEDKLPRLVVLDDVWERAVVDTLRPTGLRLLVTTRLDSVVAMRGGRTTVGNMDGGEARELLKSRSGAIALPKTEADQVAAACGWHALTLAIAGSLRFVKDDPNSASTWRRLASEMTQTKNSVRGPKMDADIGDDPTKKSLFPVLELSLESLGGDRERLFLSLLVLARGVSAPAPMLASIWDK 517
BLAST of mRNA_C-linearis_contig10.555.1 vs. uniprot
Match: A0A6H5JSG2_9PHAE (AAA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSG2_9PHAE) HSP 1 Score: 186 bits (471), Expect = 1.180e-50 Identity = 112/223 (50.22%), Postives = 142/223 (63.68%), Query Frame = 1 Query: 1 GKDQLQVLFEGIAREDRMVPTVQHRFNSVDDVIQHLTLVVWADTR-PRLVVLDDVWEREVVDTLQPTGLQLLVDTRRSSVVAAGGGRTDVGGMERAQAHELLKKKSCAVALPETEAGQVAEACGWHALTLAIAGTLRSVTSSPNSAPTWQALHSEIVRKKATARGPRMETDVGDDPTKLLLLPVLDLSLDSLGKDEQHLFLGLVVLARGVLAPVPMLASIWQN 666 G +L L E +ARE + V + +DD ++ + V D PRL++LDDVW EVV+ L+PTGLQ++V TR +SV G VG ME +A ELL+KKS AVALP EA QVA CG H LTLAIAG+LR V +P+SA W+ LHSEI R K + RG +M TD ++P++ L PVL LS + L EQ FL LVVLARGV APV MLA++W Sbjct: 278 GNLKLPALVERLARE---MDVVSENMDGLDDCVRDIAFAVARDNSVPRLLILDDVWHEEVVNALRPTGLQIVVTTRLASV----GRGMIVGDMEDGEARELLRKKSGAVALPAPEANQVARDCGCHPLTLAIAGSLRCVREAPDSALAWRELHSEIGRIKRSRRGLQMTTDSDEEPSQSPLFPVLRLSFERLRVQEQDSFLSLVVLARGVPAPVAMLANLWDK 493
BLAST of mRNA_C-linearis_contig10.555.1 vs. uniprot
Match: D7G7W8_ECTSI (NB-ARC and TPR repeat-containig protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7W8_ECTSI) HSP 1 Score: 185 bits (469), Expect = 3.970e-50 Identity = 112/223 (50.22%), Postives = 140/223 (62.78%), Query Frame = 1 Query: 1 GKDQLQVLFEGIAREDRMVPTVQHRFNSVDDVIQHLTLVVWADTR-PRLVVLDDVWEREVVDTLQPTGLQLLVDTRRSSVVAAGGGRTDVGGMERAQAHELLKKKSCAVALPETEAGQVAEACGWHALTLAIAGTLRSVTSSPNSAPTWQALHSEIVRKKATARGPRMETDVGDDPTKLLLLPVLDLSLDSLGKDEQHLFLGLVVLARGVLAPVPMLASIWQN 666 G +L L + +ARE + V + +DD ++ + V D PRL+VLDDVW EV+D L+PTGLQ+LV TR +SV G G VG ME +A ELL KKS AVALP EA QVA CG H LTL IAG+LR V +P+SA W+ LHSEI R K ++RG M TD ++P++ L PVL LS + L EQ FL L VLARGV APV MLA++W Sbjct: 278 GNLKLPALVQRLARE---MDVVSENMDGLDDCVRDIAFAVARDNSVPRLLVLDDVWHEEVMDALRPTGLQILVTTRLASV---GRGML-VGDMEEGEARELLSKKSGAVALPVPEANQVARDCGCHPLTLVIAGSLRCVREAPDSALAWRELHSEIERIKRSSRGLEMATDSDEEPSQSSLFPVLSLSFERLKVQEQDSFLSLAVLARGVPAPVAMLANLWDK 493
BLAST of mRNA_C-linearis_contig10.555.1 vs. uniprot
Match: A0A6H5J6Q8_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6Q8_9PHAE) HSP 1 Score: 181 bits (458), Expect = 2.130e-49 Identity = 110/223 (49.33%), Postives = 133/223 (59.64%), Query Frame = 1 Query: 1 GKDQLQVLFEGIAREDRMVPTVQHRFNSVDDVIQHLTLVVWADTRPRLVVLDDVWEREVVDTLQPTGLQLLVDTRRSSVVAAGGGRTDVGGMERAQAHELLKKKSCAVALPETEAGQVAEACGWHALTLAIAGTLRSVTSSPNSAPTWQALHSEIVRKKATARGPRMETDVGDDPTKLLLLPVLDLSLDSLGKDEQHLFLGLVVLARGVLAPVPMLASIWQNV 669 G+DQL L + +AR+ + +FNS++D+IQHLT+VV D PRL+VLDDV ER VVDTL+PTGL+LLV TR S+VA GGRT VG M+RA+A ELLK KS A+ LPETEA Q T GP+M+ D+GD+PTK L VLDLSL LG+ + LFL LVVLARGV AP PMLASIW V Sbjct: 251 GEDQLFALCDILARKVTPATKLPQQFNSLEDIIQHLTVVVAEDRLPRLMVLDDVLERAVVDTLRPTGLRLLVTTRLDSLVAVRGGRTVVGNMDRAEARELLKSKSGAIELPETEADQT-----------------------------------------KTILGPQMDADIGDNPTKESLFHVLDLSLKYLGRHQHRLFLSLVVLARGVSAPAPMLASIWDMV 432
BLAST of mRNA_C-linearis_contig10.555.1 vs. uniprot
Match: A0A6H5KK53_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK53_9PHAE) HSP 1 Score: 137 bits (345), Expect = 8.730e-35 Identity = 74/118 (62.71%), Postives = 87/118 (73.73%), Query Frame = 1 Query: 1 GKDQLQVLFEGIAREDRMVPTVQHRFNSVDDVIQHLTLVVWADTRPRLVVLDDVWEREVVDTLQPTGLQLLVDTRRSSVVAAGGGRTDVGGMERAQAHELLKKKSCAVALPETEAGQV 354 G+DQLQ LFEG+AR + RFNS++++IQHLT++V D PRLVVLDDVWER VVD L+PTGL+LLV TR SVVA GGRT VG M +A ELLK KS A+ LPETEA QV Sbjct: 293 GEDQLQALFEGLARLAIPEAKLPQRFNSLEEIIQHLTVLVAEDKLPRLVVLDDVWERAVVDILRPTGLRLLVTTRLDSVVAVRGGRTVVGNMATGEARELLKSKSGAITLPETEADQV 410
BLAST of mRNA_C-linearis_contig10.555.1 vs. uniprot
Match: A0A6H5LJA6_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJA6_9PHAE) HSP 1 Score: 133 bits (334), Expect = 1.770e-32 Identity = 94/231 (40.69%), Postives = 120/231 (51.95%), Query Frame = 1 Query: 4 KDQLQVLFEGIAREDRMVPT-----VQHRFNSVDDVIQHLTLVVWADTRPRLVVLDDVWEREVVDTLQPTGLQLLVDTRRSSVVAAGGGRTDVGGMERAQAHELLKKKSCAVALP----ETEAGQVAEACGWHALTLAIAGTLRSVTSSPNSAPTWQALHSEI--VRKKATARGPRMETDVGDDPTKLLLLPVLDLSLDSLGKDEQHLFLGLVVLARGVLAPVPMLASIWQ 663 K+ L L +G+ARE PT V H S++ V QHL V A T PRLVVLDDVWEREVVD L GL++LV TR SVV GG ++G M +A ELL K S V P T+ +V CG L LAIAG++ V +A W+ L E V KK RG + + + VL S D+L +Q L + VLA G LAP+ ML ++W+ Sbjct: 79 KNSLLSLLQGLAREMSAAPTDTPHGVPHVLESLEQVKQHLATVASAGTSPRLVVLDDVWEREVVDALLSLGLKVLVTTRDRSVVGVSGGLLELGDMTEEEALELLLKTSRTVGQPGHEVRTQMTKVVVLCGHLPLVLAIAGSMSVVKGKGLTAVAWEELIKEFENVAKKMRVRGEQSSS----------IKVVLGTSFDALAARKQEESLKMTVLAAGALAPIEMLRNLWE 299
BLAST of mRNA_C-linearis_contig10.555.1 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI) HSP 1 Score: 133 bits (334), Expect = 4.910e-32 Identity = 91/231 (39.39%), Postives = 121/231 (52.38%), Query Frame = 1 Query: 4 KDQLQVLFEGIAREDRMVPT-----VQHRFNSVDDVIQHLTLVVWADTRPRLVVLDDVWEREVVDTLQPTGLQLLVDTRRSSVVAAGGGRTDVGGMERAQAHELLKKKSCAVALP----ETEAGQVAEACGWHALTLAIAGTLRSVTSSPNSAPTWQALHSEI--VRKKATARGPRMETDVGDDPTKLLLLPVLDLSLDSLGKDEQHLFLGLVVLARGVLAPVPMLASIWQ 663 K L L +G+A + PT V H + ++ V QHL V T PRLVVLDDVWEREVVD P G ++L+ TR SVV GR ++G M +A ELL+K S V P T+ +V CG L LAIAG++ V +A W+ L E+ V KK ARG + + + VL+ S DSL +Q FL + VLA G LAP+ ML ++W+ Sbjct: 338 KSSLLALLQGLAWDVGAAPTDAPHGVPHVLDRLEQVQQHLAAVASTGTSPRLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVGLPAGRLELGDMTEEEALELLRKTSGTVGQPGDDVRTKMTKVVALCGHLPLVLAIAGSMSVVRGKGLTAVAWEELAKELENVAKKMRARGEQSSS----------MKVVLETSFDSLAVRKQEEFLKMAVLAAGALAPIEMLRNLWE 558
BLAST of mRNA_C-linearis_contig10.555.1 vs. uniprot
Match: D7G720_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G720_ECTSI) HSP 1 Score: 132 bits (332), Expect = 9.310e-32 Identity = 91/231 (39.39%), Postives = 122/231 (52.81%), Query Frame = 1 Query: 4 KDQLQVLFEGIAREDRMVPT-----VQHRFNSVDDVIQHLTLVVWADTRPRLVVLDDVWEREVVDTLQPTGLQLLVDTRRSSVVAAGGGRTDVGGMERAQAHELLKKKSCAVALP----ETEAGQVAEACGWHALTLAIAGTLRSVTSSPNSAPTWQALHSEI--VRKKATARGPRMETDVGDDPTKLLLLPVLDLSLDSLGKDEQHLFLGLVVLARGVLAPVPMLASIWQ 663 K L L +G+AR+ PT V +S++ V QHL V T RLVVLDDVWEREVVD P G ++L+ TR SVV GR ++G + +A ELL+K S AV P T+ +V CG L LAIAG++ V +A W+ L E+ V KK ARG + + + VL+ S DSL +Q FL + VLA G LAP+ ML ++W+ Sbjct: 321 KSSLLALLQGLARDVGAAPTDAPCGVPRVLDSLEQVRQHLAAVTSTGTSQRLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVGVPAGRLELGDVTEEEALELLRKTSGAVGQPGDDVRTKMTKVVALCGHLPLVLAIAGSMSVVRGKGLTAVAWEELAKELENVAKKMRARGEQSSS----------MKVVLETSFDSLAVRKQEEFLKMAVLAAGALAPIEMLRNLWE 541
BLAST of mRNA_C-linearis_contig10.555.1 vs. uniprot
Match: D7FUD7_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD7_ECTSI) HSP 1 Score: 131 bits (330), Expect = 1.700e-31 Identity = 90/230 (39.13%), Postives = 123/230 (53.48%), Query Frame = 1 Query: 4 KDQLQVLFEGIAREDRMVPT-----VQHRFNSVDDVIQHLTLVVWADTRPRLVVLDDVWEREVVDTLQPTGLQLLVDTRRSSVVAAGGGRTDVGGMERAQAHELLKKKSCAVALPET---EAGQVAEACGWHALTLAIAGTLRSVTSSPNSAPTWQALHSEI--VRKKATARGPRMETDVGDDPTKLLLLPVLDLSLDSLGKDEQHLFLGLVVLARGVLAPVPMLASIWQ 663 K+ L L +G+ARE PT V H +S++ V QHL V PRLVVLDDVWEREVVD P G +LL+ TR S+V GR ++G M +A ELL+K S V + + +V CG L LAIAG++ +V +A W+ L E V KK ARG + + + VL+ + DSL +Q FL + VLA G LAP+ ML+++W+ Sbjct: 123 KNSLLPLLQGLAREVGAAPTDAPHGVPHALDSLEQVQQHLAAVASTRNSPRLVVLDDVWEREVVDAFVPLGFKLLLTTRDRSIVCDPAGRLELGDMTEEEALELLRKTSGTVDPGDDVRMKMTKVVALCGHLPLVLAIAGSMSAVKGKGLTAVAWEELAKEFENVAKKMRARGQQSSS----------IKVVLETTFDSLATRKQKEFLMMAVLAAGALAPIEMLSNLWE 342
BLAST of mRNA_C-linearis_contig10.555.1 vs. uniprot
Match: D8LGG5_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGG5_ECTSI) HSP 1 Score: 130 bits (326), Expect = 6.100e-31 Identity = 94/232 (40.52%), Postives = 124/232 (53.45%), Query Frame = 1 Query: 4 KDQLQVLFEGIAREDRMVPT-----VQHRFNSVDDVIQHLTLVVWAD-TRPRLVVLDDVWEREVVDTLQPTGLQLLVDTRRSSVVAAGGGRTDVGGMERAQAHELLKKKSCAVALP----ETEAGQVAEACGWHALTLAIAGTLRSVTSSPNSAPTWQALHS--EIVRKKATARGPRMETDVGDDPTKLLLLPVLDLSLDSLGKDEQHLFLGLVVLARGVLAPVPMLASIWQ 663 K+ L L +G+ARE + PT V +S++ V QHL VV + T PRLVVLDDVWEREVVD L P G ++L+ TR SVV R D+G M +A ELL+K S V P + +V CG L LAIAG++ +V +A W+ L E V KK ARG + + VL+ S DSL +Q FL + VLA G LAP+ ML ++W+ Sbjct: 295 KNSLLPLLQGLAREMGVAPTDAPHAVPQVLDSLEQVQQHLAAVVASTGTSPRLVVLDDVWEREVVDALVPLGFKVLLTTRDWSVVVVPARRLDLGDMTEEEALELLRKTSGTVGQPGDYVRMKMTKVVALCGHLPLVLAIAGSMSAVKGKGLTAVAWEELAKSFENVAKKMRARGQQSSA----------IKVVLETSFDSLAVQKQEEFLRMSVLAAGALAPIEMLRNLWE 516 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.555.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 24 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.555.1 >prot_C-linearis_contig10.555.1 ID=prot_C-linearis_contig10.555.1|Name=mRNA_C-linearis_contig10.555.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=226bp GKDQLQVLFEGIAREDRMVPTVQHRFNSVDDVIQHLTLVVWADTRPRLVVback to top mRNA from alignment at C-linearis_contig10:2372122..2372897+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.555.1 ID=mRNA_C-linearis_contig10.555.1|Name=mRNA_C-linearis_contig10.555.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=776bp|location=Sequence derived from alignment at C-linearis_contig10:2372122..2372897+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:2372122..2372897+ >mRNA_C-linearis_contig10.555.1 ID=mRNA_C-linearis_contig10.555.1|Name=mRNA_C-linearis_contig10.555.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1356bp|location=Sequence derived from alignment at C-linearis_contig10:2372122..2372897+ (Chordaria linearis ClinC8C monoicous)back to top |