mRNA_C-linearis_contig10.545.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig10.545.1 vs. uniprot
Match: A0A6H5L8M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8M0_9PHAE) HSP 1 Score: 458 bits (1179), Expect = 7.430e-156 Identity = 239/306 (78.10%), Postives = 262/306 (85.62%), Query Frame = 1 Query: 4 GPGTSASVSTGGRRKGQLRQEGKSCHGWCRTTKATGNVRHACQGGGVDEGGEVQECSYWLCQRCLGRWQEKSQQSGGFWCCLHEGREWCPCKDRVS-KTSKPASVVNRSRLAQNRQESTDVYEFPTPTTSSLTAATTAASPTPPSTPGTTFSVCTSNSQNRVAVIKAGDRFMCSRNECRRVESLRSAATGDTASALPSHCAHAEVVTEADRTSQ-MPKADALFSGGGVTSALAKVPAGTFNPPTAAAMRARADQAAKEGVPLLVRAGNTKYFAVRDGQKFNRTVIGEWGHMKYEKGGNKMFQCKLA 915 GPGTSAS STGGRRKGQL Q+ +CHG CR K TGNVRHACQGG DEGGE + C+YW+CQ+C+GRW + S Q GFWCCLH GREWCPC +RVS K SK SVV+RSRLAQNRQESTDVYEFPT TTSS TAATTAASPTPPS PGTT+SVCTSNSQNRVAVIKAGDRF+CSR +CRR+E L SAATGDTASALPS CAHAEVV EA+RTS MPKADAL S G SAL KVPAGTFNP T A+MRARADQAAKEG+PLLVR GNTKYFAVRDGQKFNRTVIGEWGH+KY++ G+K+FQCK + Sbjct: 234 GPGTSASTSTGGRRKGQLAQQASTCHG-CRINKPTGNVRHACQGG--DEGGEARGCNYWVCQKCMGRWMQASGQPRGFWCCLHSGREWCPCAERVSTKRSKTVSVVDRSRLAQNRQESTDVYEFPT-TTSSPTAATTAASPTPPSGPGTTYSVCTSNSQNRVAVIKAGDRFLCSRPDCRRIEGLSSAATGDTASALPSRCAHAEVVIEAERTSMPMPKADALLSAGDFKSALDKVPAGTFNPRTVASMRARADQAAKEGLPLLVRVGNTKYFAVRDGQKFNRTVIGEWGHVKYDQRGSKVFQCKAS 535
BLAST of mRNA_C-linearis_contig10.545.1 vs. uniprot
Match: A0A6H5L6Z2_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Z2_9PHAE) HSP 1 Score: 444 bits (1143), Expect = 6.550e-149 Identity = 233/306 (76.14%), Postives = 258/306 (84.31%), Query Frame = 1 Query: 4 GPGTSASVSTGGRRKGQLRQEGKSCHGWCRTTKATGNVRHACQGGGVDEGGEVQECSYWLCQRCLGRWQEKSQQSGGFWCCLHEGREWCPCKDRVS-KTSKPASVVNRSRLAQNRQESTDVYEFPTPTTSSLTAATTAASPTPPSTPGTTFSVCTSNSQNRVAVIKAGDRFMCSRNECRRVESLRSAATGDTASALPSHCAHAEVVTEADRTSQ-MPKADALFSGGGVTSALAKVPAGTFNPPTAAAMRARADQAAKEGVPLLVRAGNTKYFAVRDGQKFNRTVIGEWGHMKYEKGGNKMFQCKLA 915 GPGTSAS STGGRRKGQL Q+ +CHG CR K TGNVRHACQGG DEGGE + C+YW+ Q+C+GRW + S Q GFWCCLH GREWCPC +R+S K SK SVV+RSRLAQNRQESTDVYEFPT TTSS TAATTAASPTPPS PGTT+SVCTSN QNRVAVIKAG RF+CSR +CRR+E L SAATGDTASALPS CAHAEVV EA++TS MPKADAL S G SAL KVPAGTFN T A+MRARADQAAKEG+PLLVR GNTKYFAVRDGQKFNRTVIGEWGH+KY++ G+K+FQCK + Sbjct: 150 GPGTSASTSTGGRRKGQLAQQASTCHG-CRINKPTGNVRHACQGG--DEGGEARGCNYWVRQKCMGRWMQASGQPRGFWCCLHSGREWCPCAERISTKRSKAVSVVDRSRLAQNRQESTDVYEFPT-TTSSPTAATTAASPTPPSGPGTTYSVCTSNGQNRVAVIKAGARFLCSRPDCRRIEGLSSAATGDTASALPSRCAHAEVVIEAEKTSMPMPKADALLSAGDFESALDKVPAGTFNQRTVASMRARADQAAKEGLPLLVRVGNTKYFAVRDGQKFNRTVIGEWGHVKYDQRGSKVFQCKAS 451
BLAST of mRNA_C-linearis_contig10.545.1 vs. uniprot
Match: D7FN79_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN79_ECTSI) HSP 1 Score: 272 bits (695), Expect = 6.620e-84 Identity = 159/307 (51.79%), Postives = 200/307 (65.15%), Query Frame = 1 Query: 10 GTSASVSTGGRRKGQLRQEGKSCHGWCRTTKATGNVRHACQGGGVDEGGEVQECSYWLCQRCLGRWQEKSQQSGGFWCCLHEGREWCPCKDRVSKTSKPASVVNRSRLAQNRQESTDVYEFPTPTTSSLTAATTAASPTPPSTPGTTFSVCTSNSQNRVAVIKAGDRFMCSRNECRRVESLRS--AATGDTASALPSHCAHAEVVTEADRTSQ-MPKADALFSGGGVTSALAK-VPAGTFNPPTAAAMRARADQAAKEGVPLLVRAGNTKYFAVRDGQKFNRTVIGEWGHMKYE-KGGNKMFQCKLA 915 G S+SVSTGGRRKGQLR++ KSCHG CRT K +++AC VD G +YWLC+ C W E S G F CCLH G++WCPC R P + RS LA++R ST ++EFP T +LT A T S TP G T+SVCTS RVAVIK GD F+CSR +CRRV++ ++ AATG T SALP+ C HAEVV +A+R+S MP AD LFS AL VPAG F+ T AM ARADQAA++GVP+LV G+TKYF + DG + NR V+G W H+KY+ + G+K+FQCK+ Sbjct: 210 GMSSSVSTGGRRKGQLREQAKSCHG-CRTNKPGQGIKYAC----VD--GRNPRWNYWLCKSCFKEWTEASGVDG-FLCCLHRGKQWCPCNSRKRVRRGPVPALERSALAKSRIGSTSIFEFPARTRPALTVARTTPSATPTGGAGKTYSVCTSVGLQRVAVIKTGDEFICSRKDCRRVKNPQTSAAATGGTDSALPAPCCHAEVVLQAERSSMPMPTADPLFSAEEFRHALTTAVPAGAFSEGTTRAMHARADQAAEDGVPVLVGLGSTKYFGITDGLQNNRKVVGGWAHVKYDDRDGSKIFQCKVG 508
BLAST of mRNA_C-linearis_contig10.545.1 vs. uniprot
Match: A0A6H5KAW8_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAW8_9PHAE) HSP 1 Score: 254 bits (649), Expect = 3.650e-76 Identity = 147/281 (52.31%), Postives = 184/281 (65.48%), Query Frame = 1 Query: 16 SASVSTGGRRKGQLRQEGKSCHGWCRTTKATGNVRHACQGGGVDEGGEVQECSYWLCQRCLGRWQEKSQQSGGFWCCLHEGREWCPCKDRVSKTSKPASVVNRSRLAQNRQESTDVYEFPTPTTSSLTAATTAASPTPPSTPGTTFSVCTSNSQNRVAVIKAGDRFMCSRNECRRVESLRSAATGDTASALPSHCAHAEVVTEADRTSQ-MPKADALFSGGGVTSALAKVPAGTFNPPTAAAMRARADQAAKEGVPLLVRAGNTKYFAVRDGQKFNRTVIG 855 S+SVSTGGRRKGQL +E ++CH CRT +++AC C YWLCQ+CL RW E+S + G F CCLH G WCPCK+R + P +V++RS A+ R T V+EFP P+ +TAATT S TP S GTT+SVCTS S NRVAVIKAG+++MCSRN+C +ATG T LP+ C HAEVV EA+ +S MPKAD +FS AL VP GTFN T AM RADQAA+EGVP+LV G+T+YF ++DG + +RTVIG Sbjct: 2 SSSVSTGGRRKGQLTEEARTCHE-CRTKDPRQGIKNACGDSA---------CCYWLCQKCLERWTEQSGRDG-FQCCLHYGSLWCPCKNRTRVRTGPVAVLDRSTQAKTRHVRTSVFEFPAPSPPVVTAATTTLSATPTSGTGTTYSVCTSVSLNRVAVIKAGNKYMCSRNDC--------SATGVTDPPLPARCPHAEVVLEAEGSSTPMPKADPVFSAEEFRQALTTVPPGTFNESTTRAMHTRADQAAQEGVPVLVGLGSTRYFGIKDGHENDRTVIG 263
BLAST of mRNA_C-linearis_contig10.545.1 vs. uniprot
Match: A0A6H5JH13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH13_9PHAE) HSP 1 Score: 202 bits (515), Expect = 1.530e-55 Identity = 118/207 (57.00%), Postives = 146/207 (70.53%), Query Frame = 1 Query: 304 PASVVNRSRLAQNRQESTDVYEFPTPTTSSLTAATTAASPTPPSTPGTTFSVCTSNSQNRVAVIKAGDRFMCSRNECRRVESLRS--AATGDTASALPSHCAHAEVVTEADRTSQ-MPKADALFSGGGVTSALAKVPAGTFNPPTAAAMRARADQAAKEGVPLLVRAGNTKYFAVRDGQKFNRTVIGEWGHMKYE-KGGNKMFQCKL 912 P V++RS A+ R V+EFP + +TAATT S TP S G T SVCTS S NRVAVIKAG+++MCSR+ECRRV ++++ AA G T S LP+ C HAEVV EA+R+S MPKAD LFS G AL VP GTFN T AM RADQAA+ GVP+LV G+T+ F ++DG + NRTVIGEW H+KY+ KGG+KMFQCK+ Sbjct: 576 PVPVLDRSTQAKTRHVRASVFEFPARSPPVVTAATTTLSATPTSGTGATHSVCTSVSLNRVAVIKAGNKYMCSRDECRRVGNVQTSAAAAGVTGSPLPARCPHAEVVLEAERSSTPMPKADPLFSAGEFREALTTVPPGTFNKSTTRAMHTRADQAAQAGVPVLVGLGSTRCFEIKDGHENNRTVIGEWAHVKYDDKGGSKMFQCKV 782
BLAST of mRNA_C-linearis_contig10.545.1 vs. uniprot
Match: A0A6H5KVV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVV8_9PHAE) HSP 1 Score: 183 bits (465), Expect = 9.730e-53 Identity = 112/247 (45.34%), Postives = 152/247 (61.54%), Query Frame = 1 Query: 202 RWQEKSQQSGGFWCCLHEGREWCPCKDRVSKTSK-PASVVNRSRLAQNRQESTDVYEFPTPTTSSLTAATTAASPTPPSTP--GTTFSVCTSNSQNRVAVIKAGDRFMCSRNECRRVESL--RSAATGDTASALPSHCAHAEVVTEADRTSQMPKADA---LFSGGGVTSALAKVPAGTFNPPTAAAMRARADQAAKEGVPLLVRAGNTKYFAVRDGQKFNRTVIGEWGHMKYEKGGNKM-FQCKLA 915 +W S Q F CC+H +E CPC R K P S+++RS A+ R T V+E P+ T+ TA +T PTP TP GTT+S CTS QNRV+V+++ R+MCSR EC+ +E+L ++AA GDT L HCAHA+VV +A + S +P A A L S AL VP GTFN T A+RAR +A + G+P+LV+ G+TK+FAVRDG FNR ++G W H+K E+ G K +CK+ Sbjct: 3 KWLRSSAQLSHFMCCVHFEKEPCPCGKRKKNARKGPTSLLDRSTQARTRNVGTSVFELPSTQTTPTTADST---PTPAPTPREGTTYSTCTSVGQNRVSVVESNGRYMCSRPECKTIETLSAKAAAGGDTECVLRRHCAHADVVVQA-KASSVPMAGATALLPSAEEFLRALDAVPTGTFNKHTMQAIRARVARAEELGIPVLVKLGDTKFFAVRDGPNFNRNIVGGWAHVKCEESGGKTTLRCKVG 245
BLAST of mRNA_C-linearis_contig10.545.1 vs. uniprot
Match: A0A6H5KZ13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ13_9PHAE) HSP 1 Score: 146 bits (368), Expect = 2.440e-38 Identity = 72/91 (79.12%), Postives = 80/91 (87.91%), Query Frame = 1 Query: 643 MPKADALFSGGGVTSALAKVPAGTFNPPTAAAMRARADQAAKEGVPLLVRAGNTKYFAVRDGQKFNRTVIGEWGHMKYEKGGNKMFQCKLA 915 MPKADAL S G SAL KVPAGTFNP T A+MRARADQAAKEG+PLLVR GNTKYFAVRDGQKFNRTVIGEWGH+KY++ G+K+FQCK + Sbjct: 3 MPKADALLSAGDFKSALDKVPAGTFNPRTVASMRARADQAAKEGLPLLVRVGNTKYFAVRDGQKFNRTVIGEWGHVKYDQRGSKVFQCKAS 93
BLAST of mRNA_C-linearis_contig10.545.1 vs. uniprot
Match: A0A6H5KLI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLI9_9PHAE) HSP 1 Score: 132 bits (333), Expect = 1.010e-34 Identity = 73/120 (60.83%), Postives = 86/120 (71.67%), Query Frame = 1 Query: 559 AATGDTASALPSHCAHAEVVTEADRTSQ-MPKADALFSGGGVTSALAKVPAGTFNPPTAAAMRARADQAAKEGVPLLVRAGNTKYFAVRDGQKFNRTVIGEWGHMKYE-KGGNKMFQCKL 912 AATG T S LP+ C EVV E +R+S MPKAD LFS G AL VP GTFN T AM RADQAAKEGVP+LV G+T+ F ++DG + NRTVIGEW H+KY+ KGG+KMFQCK+ Sbjct: 10 AATGVTGSPLPARCPPVEVVLEVERSSTPMPKADPLFSAGEFREALTTVPPGTFNESTTRAMHTRADQAAKEGVPVLVGLGSTRCFGIKDGHENNRTVIGEWAHVKYDDKGGSKMFQCKV 129 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.545.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.545.1 >prot_C-linearis_contig10.545.1 ID=prot_C-linearis_contig10.545.1|Name=mRNA_C-linearis_contig10.545.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=146bp MCSRNECRRVESLRSAATGDTASALPSHCAHAEVVTEADRTSQMPKADALback to top mRNA from alignment at C-linearis_contig10:2157597..2159771+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.545.1 ID=mRNA_C-linearis_contig10.545.1|Name=mRNA_C-linearis_contig10.545.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2175bp|location=Sequence derived from alignment at C-linearis_contig10:2157597..2159771+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:2157597..2159771+ >mRNA_C-linearis_contig10.545.1 ID=mRNA_C-linearis_contig10.545.1|Name=mRNA_C-linearis_contig10.545.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=876bp|location=Sequence derived from alignment at C-linearis_contig10:2157597..2159771+ (Chordaria linearis ClinC8C monoicous)back to top |