mRNA_C-linearis_contig10.526.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig10.526.1 vs. uniprot
Match: D7FZY7_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY7_ECTSI) HSP 1 Score: 760 bits (1962), Expect = 7.830e-254 Identity = 418/692 (60.40%), Postives = 515/692 (74.42%), Query Frame = 1 Query: 424 SSDATAEAAKLALRIGSKAADVISFLADLGEELP-------SISPVLKTLTAIREKVETVSSNHDELKALEERCTYVTACVVVKCKQNSRSEINLTPLEDCVKAAWKVVERCSRRGRMTRVLKASGEKEELAGLNARVDRLTGDLGLSGIAIVEGKTDDLKALLERVGAKQEVNQEQLLANQDEMLERIRNLPRTPVKLAKVPDGMPVRKTWHVERRDVMETVLDELTHGGLPRLVGLVGDSGAGKTTAASEIVRSKEVREAFSDGIVWLTVNEGAKDRLPFLMTQLARMVFKGVGGRVGRQPAEPDDGAAYVKKCMQKGHGGEGLKCLVVADNVWEVEVVSKLLETGMSILVSTRNAELVA-EHGAVVGVDELSEADAESVLRRAAELPPDVRLPDDAADLIELCGRVAMDLAFVGRWSTVRGRRDRRAWLNAARKVRAEMKRAGGDPENRLTETSRTKRRKAVLQAGFEDLATGVDDERVQRLYLSLSMLPDAHGFTLKDAAVLLHDGAPDAQDEASMFGVVEILERWSVLRSVKRWCLGTQHDWTVYFMHDAHSAFARENLMDRGNVRRPALERWMRYLSSLSTLRTHATSELKALWVAAENVGGASWTQARPYVKALGTIDGSDPLLCRSTAALARFQLAQSDWDGATTTCRQLVEVDVAGFLNDYGLHLEVQSLCKL---FRKAGRL 2466 SS A AE KL L++GS D I+F+A+LGE+LP + PVLKTLTAIRE VE V +N +EL+ L RC Y+TACVVVK +Q+S SE++LTP+E+C++AA ++VERC RG+MTRVL AS +KEE+A + A + L DL L+G+AI+EGKT DL A++ER+G Q QE +LAN + +++R L +TP KLAK+P P+RK+WHVER VME V + LT G P LVGLVGDSG+GKTTAASEIVRS EVR+AFSDG+VWLTVN GAKDRLP LM QLA M+ + VGGR +PA DDGAAY+K+ MQ+GHGG+GLKCLVVADNVWE EVV KLLETGM +L+STR+ ELV G VVGVDE+SE +AESVLR+A+ELPP+ RLPDDA DLIELCGRVAMDLAFVGRWSTVRGR DR AW +AA KVRAEM + G+ + +R RRKAVLQAGFEDLA+G DDERVQRLYLSL++LPD GFT+KDAAVLL+D P A+DEAS GVVEILERWSVLRS+ R C Y +HDAHS FARE LMDRG+VRRPAL RW R +SSL TLR+ +++ LW+ E VGG W RPY AL ++ SDPLL S A+A+FQ + DW+ A TCR+L+++ V + Y L + ++SL +L ++ AGRL Sbjct: 5 SSGAAAEVTKLGLKMGSATVDSITFMAELGEDLPFGEPVLPHLRPVLKTLTAIRETVENVQNNQEELQTLYRRCVYLTACVVVKSRQSSCSEMDLTPVEECLEAAGELVERCGGRGKMTRVLNASSDKEEIARMKANIRDLEADLSLAGVAILEGKTSDLTAMVERMGTNQAATQEMILANTESIIDR---LSKTPAKLAKIPKATPIRKSWHVERLYVMERVFEALTAVGGPHLVGLVGDSGSGKTTAASEIVRSNEVRQAFSDGVVWLTVNHGAKDRLPSLMLQLAHMMCEEVGGR---RPATSDDGAAYIKEKMQRGHGGKGLKCLVVADNVWEKEVVWKLLETGMWVLLSTRDEELVVGSEGEVVGVDEMSEVEAESVLRKASELPPETRLPDDAVDLIELCGRVAMDLAFVGRWSTVRGRSDRTAWSDAAGKVRAEMGKIEGERVSGTVVETRDARRKAVLQAGFEDLASGSDDERVQRLYLSLAVLPDGRGFTVKDAAVLLYDRKPSAEDEASAAGVVEILERWSVLRSI-RGCYRMAWRGGHYVLHDAHSDFAREKLMDRGDVRRPALVRWTRNISSLDTLRSVRWHDVRDLWLGVEQVGGDGWKSTRPYEAALAGMEDSDPLLPTSVVAVAKFQRHEEDWEEAIATCRRLLDMPVTK-VGPYSLSV-IRSLHELGLGYKHAGRL 687
BLAST of mRNA_C-linearis_contig10.526.1 vs. uniprot
Match: A0A6H5KRK8_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRK8_9PHAE) HSP 1 Score: 714 bits (1842), Expect = 1.520e-235 Identity = 399/663 (60.18%), Postives = 483/663 (72.85%), Query Frame = 1 Query: 427 SDATAEAAKLALRIGSKAADVISFLADLGEELPSISPVLKTLTAIREKVETVSSNHDELKALEERCTYVTACVVVKCKQNSRSEINLTPLEDCVKAAWKVVERCSRRGRMTRVLKASGEKEELAGLNARVDRLTGDLGLSGIA-IVEGKTDDLK-------ALLERVGAKQEVNQEQLLANQDEMLERIRNLPRTPVKLAKVPDGMPVRKTWHVERRDVMETVLDELTHGGLPRLVGLVGDSGAGKTTAASEIVRSKEVREAFSDGIVWLTVNEGAKDRLPFLMTQLARMVFKGVGGRVGRQPAEPDDGAAYVKKCMQKGHGGEGLKCLVVADNVWEVEVVSKLLETGMSILVSTRNAELVAE-HGAVVGVDELSEADAESVLRRAAELPPDVRLPDDAADLIELCGRVAMDLAFVGRWSTVRGRRDRRAWLNAARKVRAEMKRAGGDPENRLTETSRTKRRKAVLQAGFEDLATGVDDERVQRLYLSLSMLPDAHGFTLKDAAVLLHDGAPDAQDEASMFGVVEILERWSVLRSVKRWCLGTQHDWTVYFMHDAHSAFARENLMDRGNVRRPALERWMRYLSSLSTLRTHATSELKALWVAAENVGGASWTQARPYVKALGTIDGSDPLLCRSTA-ALARFQLAQSDWDGATTTCRQLVEVD 2385 +DAT E AK+A ++GS AADVI F+ADLGEELP + PVL+TL IREKVETV N ++L L +RCTY+TAC +VKC+ + +E+++ PLEDCV A K VER +RG+++RVLKA G+K ++ L R+ L GDL L+GIA + + D K A ER+G KQE N E+LLA + +L R LP+ P K+A VP G P K+WHVERR+V ETV L G P LVGLVGDSGAGKTTAAS IV S VRE FSDGIVWL VNEG D LP LM QLA+MVF+ +GG VGR+P+ DDG AYVK+ ++ GHGG+GLKCLVVADNVWE +VVS+LLETGM IL+STR+ ELV +G VVGVDELSEA+AESVLRRAAEL P+ RLPDDA DLIELCGRVAMDLAFVGRWSTVRGR+DR AW +AA KVRAEM + G E+ +E SR RR+A+LQAGFEDLA G DDERVQRLYLSL++LPD H FT+KDAAVLL+D P +DEAS+ GVVE LERW+++RSV+ Y MHDAHS FARE+LMDRG+VRRPA++R +R +SSL LR+ LK LW + VGG W RPY KAL +D S+ L R T A+A FQ AQ DW GA T R+L+ V+ Sbjct: 6 ADATGEVAKIASKMGSAAADVIQFVADLGEELPLLQPVLRTLRIIREKVETVKRNPEDLTVLHQRCTYITACFIVKCR-HGYTELDVAPLEDCVNAVEKFVERYRKRGKISRVLKAVGDKGDIVQLKERLRDLEGDLSLAGIASLAKYLIADPKPCSPVAFAFQERMGKKQEGNHEELLAKTETIL---RQLPKPPAKVANVPKGTPTHKSWHVERRNVTETVFQALDADGGPHLVGLVGDSGAGKTTAASAIVSSIVVRETFSDGIVWLPVNEGVHDNLPCLMLQLAQMVFEDIGGSVGRRPSGSDDGLAYVKQQVENGHGGKGLKCLVVADNVWESDVVSQLLETGMWILLSTRDEELVKRANGEVVGVDELSEAEAESVLRRAAELSPEARLPDDAKDLIELCGRVAMDLAFVGRWSTVRGRQDRTAWSDAACKVRAEMDKGGVTAESNGSEDSRVNRRRAILQAGFEDLAIGSDDERVQRLYLSLAVLPDGHAFTVKDAAVLLYDREPGTEDEASVGGVVEALERWTIIRSVE----------ATYRMHDAHSNFARESLMDRGDVRRPAIKRLVRSISSLEALRSINRYTLKHLWAGVQRVGGDGWATTRPYEKALEALDESNSPLFRETIEAVAWFQEAQEDWTGANRTWRRLLAVE 654
BLAST of mRNA_C-linearis_contig10.526.1 vs. uniprot
Match: D7FZW8_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW8_ECTSI) HSP 1 Score: 709 bits (1830), Expect = 2.560e-234 Identity = 393/686 (57.29%), Postives = 488/686 (71.14%), Query Frame = 1 Query: 427 SDATAEAAKLALRIGSKAADVISFLADLGEELPSISPVLKTLTAIREKVETVSSNHDELKALEERCTYVTACVVVKCKQNSRSEINLTPLEDCVKAAWKVVERCSRRGRMTRVLKASGEKEELAGLNARVDRLTGDLGLSGIAIVEGKTDDLKALLERVGAKQEVNQEQLLANQDEMLERIRNLPRTPVKLAKVPDGMPVRKTWHVERRDVMETVLDELTHGGLPRLVGLVGDSGAGKTTAASEIVRSKEVREAFSDGIVWLTVNEGAKDRLPFLMTQLARMVFKGVGGRVGRQPAEPDDGAAYVKKCMQKGHGGEGLKCLVVADNVWEVEVVSKLLETGMSILVSTRNAELVAE-HGAVVGVDELSEADAESVLRRAAELPPDVRLPDDAADLIELCGRVAMDLAFVGRWSTVRGRRDRRAWLNAARKVRAEMKRAGGDPENRLTETSRTKRRKAVLQAGFEDLATGVDDERVQRLYLSLSMLPDAHGFTLKDAAVLLHDGAPDAQDEASMFGVVEILERWSVLRSVKRWCLGTQHDWTVYFMHDAHSAFARENLMDRGNVRRPALERWMRYLSSLSTLRTHATSELKALWVAAENVGGASWTQARPYVKALGTIDGSDPLLCRSTAALARFQLAQSDWDGATTTCRQLVEVDVAGFLNDYGLHLEVQSLCKLFRKAGRLGESEK 2481 SD+ AEAA+LAL IGS +D +S DLGEELP I PV KTL AIR VETV +N +EL ALE+RCTY+TAC VVKC+ SE+++ PL+DCV+AA ERCSRRG+++RV+KA +K E+AGLN+ VDRLT DLGL+GIA++EGK DD+K L+R+ +R+ +LPR+ KLA VP G PVRK+WHVERR M TVLD L +V L G SG+GKTT A+EIVRS EVREAFSDGIVWL VNEGAK RLP LM QLARMV + +GG VGR P+ +D A Y+K+ +++GH G LKCLVVADNVWE +VVSKL+ETGM +L+STR+ +V G V VDELS+ADAESVL+RAAELP + RLPDDA DLI+LCGRVAMD+AFVGRWSTVRGR D +W +AA +R EM++ G DP+N E KRRKA+LQ GFEDLA G DDERVQRLYLSL+++PD H F+LKDAAVLL+D +P +DEAS GVV++LERWS++RS + GT Y MHDAH+ FARE L+DRG+VRRPAL+RW RYLSSL LR+ LK LW+A E +GG W + RPY KALG + SD LL + A+ FQ AQ D +GA+ + R+L+EV+ D+ L ++ A RLG E+ Sbjct: 6 SDSAAEAARLALEIGSTISDAVSCAVDLGEELPVIKPVFKTLKAIRTTVETVKNNREELAALEQRCTYITACFVVKCRL-IESEVDVAPLKDCVEAAKNFAERCSRRGKVSRVIKAFSDKSEIAGLNSSVDRLTTDLGLAGIAVLEGKVDDMKKTLDRID------------------QRLESLPRSFGKLAAVPMGAPVRKSWHVERRHAMATVLDALNGSDRACVVALAGYSGSGKTTVAAEIVRSTEVREAFSDGIVWLPVNEGAKKRLPSLMLQLARMVHEEIGGSVGRVPSASEDSATYIKQRLEEGHKGRRLKCLVVADNVWEEDVVSKLVETGMWVLLSTRDEAVVKRSRGKAVVVDELSQADAESVLKRAAELPRESRLPDDAVDLIKLCGRVAMDVAFVGRWSTVRGRHDPASWSDAASTIRTEMEKVGHDPDNDSAENIPAKRRKAILQGGFEDLAIGSDDERVQRLYLSLAVMPDGHAFSLKDAAVLLYDRSPSTEDEASAGGVVDVLERWSIIRSAQ----GT------YRMHDAHTDFARECLLDRGHVRRPALKRWTRYLSSLDILRSTDRYVLKGLWLAIERLGGDGWGKTRPYEKALGMMLESDALLRTTAEAVGWFQEAQEDLEGASASWRRLLEVEKRELGADHPFVLNTYGNLAIW--AERLGNIEE 660
BLAST of mRNA_C-linearis_contig10.526.1 vs. uniprot
Match: A0A6H5KLK9_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLK9_9PHAE) HSP 1 Score: 663 bits (1711), Expect = 1.610e-218 Identity = 378/678 (55.75%), Postives = 469/678 (69.17%), Query Frame = 1 Query: 469 GSKAADVISFLADLGEELPSISPVLKTLTAIREKVETVSSNHDELKALEERCTYVTACVVVKCKQNSRSEINLTPLEDCVKAAWKVVERCSRRGRMTRVLKASGEKEELAGLNARVDRLTGDLGLSGIAIVEGKTDDLKALLERVGAKQEVNQEQLLANQDEMLERIRNLPRTPVKLAKVPDGMPVRKTWHVERRDVMETVLDELTHGGLPRLVGLVGDSGAGKTTAASEIVRSKEVREAFSDGIVWLTVNEGAKDRLPFLMTQLARMVFKGVGGRVGRQPAEPDDGAAYVKKCMQKGHGGEGLKCLVVADNVWEVEVVSKLLETGMSILVSTRNAELV--AEHGAVVGVDELSEADAESVLRRAAELPPDVRLPDDAADLIELCGRVAMDLAFVGRWSTVRGRRDRRAWLNAARKVRAEMKRAGGDPENRLTETS---RTKRRKAVLQAGFEDLATGVDDERVQRLYLSLSMLPDAHGFTLKDAAVLLHDGAPDAQDEASMFGVVEILERWSVLRSVKRWCLGTQHDWTVYFMHDAHSAFARENLMDRGNVRRPALERWMRYLSSLSTLRTHATS-ELKALWVAAENVGGASWTQARPYVKALGTIDGSDPLLCRSTAALARFQLAQSDWDGATTTCRQLVEVDVAGFLNDYGLHLEVQSLCKLFRKAGRLGESEKL 2484 G+ A+DV++FL + + LP I PVLKTL A+ AL +RCTY+T CV+V+C++ S S + TPL +CV A VERCSRRG ++RVLKA+ +KEE+AGL R++ L GDL L+GIA V GK +DLKALLE V KQ ++ Q LAN D M R+ P T LA VP G P RK+WHVERR VM V D L G PRLVGLVGDSG+GKTTAA+EIVRS EVREAFSDGIVWL+VN+GA +RL LM LAR+VF+ +GG VGR+PA DDGAAY ++ MQ GHGG+GLKCLVVADNVWE V+SKLLETGM +L+STR+ LV AE G VVGVDELSE DA SVLRRA+EL P++RLPD+A +L+ELCGRVAMD+AFVGRWSTVRGR DR AW +AA KVR++++R+ R+++ R RRKAVLQAGFEDLA G DDER+ RLYLSL++LPD H FT KDA LL+D AP +DE S ++ LERWS LR+ + Y MHDAHS FAR+ +MDRG VR+PA++RW LSSL LR+ LK LW+A +GG SW RPY AL +D S+PLL +S +L FQ AQ DW A+ TCR+++ V D+ H + +L L A RLG +E++ Sbjct: 6 GTMASDVLAFLTEASDGLPLIEPVLKTLKAVXXXXXXXXXXXXXXAALYQRCTYITGCVIVRCRKGS-SGLKATPLMECVNAVGAFVERCSRRGMLSRVLKATDDKEEIAGLKQRLEDLEGDLRLAGIATVGGKVEDLKALLEHVDTKQALSHSQTLANHDIMFARVGISPET---LATVPAGTPARKSWHVERRHVMRAVCDALPGEGGPRLVGLVGDSGSGKTTAAAEIVRSTEVREAFSDGIVWLSVNDGATERLRALMMHLARVVFEDIGGSVGRRPAGLDDGAAYTRQRMQSGHGGKGLKCLVVADNVWEEAVISKLLETGMWVLLSTRDEALVRSAEGGVVVGVDELSEEDAMSVLRRASELSPELRLPDEAVELVELCGRVAMDVAFVGRWSTVRGRSDRTAWSDAAHKVRSKIERS------RVSDNVWDIRAVRRKAVLQAGFEDLAIGSDDERIPRLYLSLAVLPDGHAFTAKDATALLYDRAPCPEDEVSTEELIRTLERWSALRT----------EGGAYRMHDAHSGFARDCVMDRGYVRKPAVKRWTLRLSSLDVLRSFDDPFVLKGLWLAVGRLGGESWRNVRPYAAALSEMDESNPLLLKSLQSLGWFQDAQGDWQSASDTCRRILAVKRRQLGADHP-HT-ILTLRALVYCAERLGNAEEM 661
BLAST of mRNA_C-linearis_contig10.526.1 vs. uniprot
Match: A0A6H5KJ30_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ30_9PHAE) HSP 1 Score: 592 bits (1526), Expect = 4.110e-190 Identity = 339/622 (54.50%), Postives = 422/622 (67.85%), Query Frame = 1 Query: 424 SSDATAEAAKLALRIGSKAADVISFLADLGEELPSISPVLKTLTAIREKVETVSSNHDELKALEERCTYVTACVVVKCKQNSRSEINLTPLEDCVKAAWKVVERCSRRGRMTRVLKASGEKEELAGLNARVDRLTGDLGLSGIAIVEGKTDDLKALLERVGAKQEVNQEQLLANQDEMLERIRNLPRTPVKLAKVPDGMPVRKTWHVERRDVMETVLDELTHGGLPRLVGLVGDSGAGKTTAASEIVRSKEVREAFSDGIVWLTVNEGAKDRLPFLMTQLARMVFKGVGGRVGRQPAEPDDGAAYVKKCMQKGHGGEGLKCLVVADNVWEVEVVSKLLETGMSILVSTRNAELVAE-HGAVVGVDELSEADAESVLRRAAELPPDVRLPDDAADLIELCGRVAMDLAFVGRWSTVRGRRDRRAWLNAARKVRAEMKRAGGDPENRLTETSRTKRRKAVLQAGFEDLATGVDDERVQRLYLSLSMLPDAHGFTLKDAAVLLHDGAPDAQDEASMFGVVEILERWSVLRSVKRWCLGTQHDWTVYFMHDAHSAFARENLMDRGNVRRPALERWMRYLSSLSTLRTHATSELKALWVAAENVGGASWTQARPYVKALGTIDGSDP 2286 SS A AE KLAL++GS D I+F+ADL E+LP N +EL+ L RC ++T CV+VK +Q+S SE++++P+E+C++AA ++VERC RG+MTRVL AS +K+++A + A + L +L L+G+AI+EGKT DL+A +ER+ Q QE +LAN + + +R L +TP K AK+P P+ K+WHVER DV+E V + LT G P LVGLVGDSG+GKTTAASEIVRS E DRLP LM QLA MV++ +GGR +PA DDG AY+K+ M +GHGGEGLKCL V DNVWE EVV +LLE GM +L+STR+ ELV G VV V+ELSE +AESVLR+AAELPP+ RLPDDA DLIELCGRVAMDLAF GR STVRGR DR AW AA KVR EM + + +R RRKAV+QAGF DLA G DDERVQRLYLSL++LPD FT+KDAAVL++D P A+DEAS GVVEILERWS L S+ R C + Y +HDAHS FARE LMDRG+V RPAL RW R +SS+ TLR E++ LW+ AE VGG W RPY AL ++ SDP Sbjct: 5 SSGAAAEVTKLALKMGSATVDSITFVADLCEDLPF-------------------ENQEELQTLYRRCVFLTTCVIVKSRQSSFSEMDVSPVEECLEAAGELVERCGGRGKMTRVLNASSDKDQIARMKANIRDLEANLSLAGVAILEGKTSDLRATVERMAKIQAATQEVILANTEIITDR---LSKTPAKPAKIPKSTPIWKSWHVERFDVVERVFEPLTADGGPPLVGLVGDSGSGKTTAASEIVRSNE-------------------DRLPSLMLQLAHMVYEEIGGR---RPATSDDGTAYIKERMHRGHGGEGLKCLGVVDNVWEKEVVCELLEAGMWVLLSTRDEELVTGWEGEVVEVNELSEVEAESVLRKAAELPPETRLPDDAVDLIELCGRVAMDLAFGGRLSTVRGRSDRTAWSKAASKVRTEMSKGECEGVRGTVVETRDARRKAVVQAGFGDLAIGSDDERVQRLYLSLAVLPDGRRFTVKDAAVLIYDRMPSAEDEASAAGVVEILERWSALCSI-RGCYRMAWRGSHYVLHDAHSDFAREKLMDRGDVCRPALVRWTRNISSVDTLRAVRWHEVRDLWLGAEQVGGDGWKITRPYEAALAGLEDSDP 581
BLAST of mRNA_C-linearis_contig10.526.1 vs. uniprot
Match: A0A6H5J759_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J759_9PHAE) HSP 1 Score: 552 bits (1422), Expect = 1.500e-179 Identity = 322/604 (53.31%), Postives = 396/604 (65.56%), Query Frame = 1 Query: 559 IREKVETVSSNHDELKALEERCTYVTACVVVKCKQ-NSRSEINLTPLEDCVKAAWKVVERCSRRGRMTRVLKASGEKEELAGLNARVDRLTGDLGLSGIAIVEGKTDDLKALLERVGAKQEVNQEQLLANQDEMLERIRNLPRTPVKLAKVPDGMPVRKTWHVERRDVMETVLDELTHGGLPRLVGLVGDSGAGKTTAASEIVRSKEVREAFSDGIVWLTVNEGAKDRLPFLMTQLARMVFKGVGGRVGRQPAEPDDGA-AYVKKCMQKGHGGEGLKCLVVADNVWEVEVVSKLLETGMSILVSTRNAELVA-EHGAVVGVDELSEADAESVLRRAAELPPDVRLPDDAADLIELCGRVAMDLAFVGRWSTVRGRRDRRAWLNAARKVRAEMKRAGGDPENRLTETSRTKRRKAVLQAGFEDLATGVDDERVQRLYLSLSMLPDAHGFTLKDAAVLLHDGAPDAQDEASMFGVVEILERWSVLRSVKRWCLGTQHDWTV-YFMHDAHSAFARENLMDRGNVRRPALERWMRYLSSLSTLRTHATSELKALWVAAENVGGASWTQARPYVKALGTIDGSDPLLCRSTAALARFQLAQSDWDGATT 2358 +RE VETV DEL ALE+RCTY+TAC++ K + + S N++PLEDCV A K VER +R +E++ Q +++LLANQ+ +++R LP+ P+K A VP G P RK+WHVER V ETV++ LT PRLVGLVGDSGAGKTTAA+E+VRS VRE+FSDGIVWLTVN GA RLP LM QLARMV + +GGRVG P E A AY+K+ M+ GHGG+GLKCL VADNVWE EVVS LL+TGM++L+STR+ ELV G V +DELS DAESVLR AAELPP VRLPDDA DLI+LCGRVAMDLAFVGRWSTVRGR DR AW +AA KVRAE+ + GD + + +R RRKA+LQAG EDLA G DDERVQRLYLSL++LPD G + DAA+LL+D P A+DE S+ V+++LERWSVLRS W Y+MHD S FAR +LMDRG+VRR AL RW+ Y+SSL T+R++ LK W+ E VGG W + P AL +D +PLL S AA+A+ A DW+ A+T Sbjct: 1 MRETVETVYQTRDELAALEKRCTYMTACIIAKFRHAHPGSAPNVSPLEDCVMEAEKFVERRKKR-----------------------------------------------TMEQMVQNQAAARKELLANQEIIIDR---LPKPPIKKAYVPQGTPTRKSWHVERH-VTETVVEALTGEAGPRLVGLVGDSGAGKTTAAAELVRSNVVRESFSDGIVWLTVNYGANKRLPSLMLQLARMVQEDIGGRVGGHPNESGGNADAYIKQRMENGHGGKGLKCLAVADNVWEKEVVSMLLKTGMTVLLSTRHEELVTGARGVPVRLDELSARDAESVLRSAAELPPAVRLPDDAVDLIDLCGRVAMDLAFVGRWSTVRGRHDRVAWSDAAAKVRAEIAKIEGDD---IVDGARGNRRKAILQAGLEDLAIGSDDERVQRLYLSLAVLPDDQGIQVHDAALLLYDRDPTAEDEESVARVLDVLERWSVLRST----------WAYKYYMHDVQSEFARASLMDRGDVRRHALRRWVGYISSLDTVRSYNADYLKHQWLDVEKVGGEGWDETHPCETALAEMDDPEPLLQESIAAVAKAHEAHEDWEKAST 540
BLAST of mRNA_C-linearis_contig10.526.1 vs. uniprot
Match: A0A6H5KYW3_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYW3_9PHAE) HSP 1 Score: 553 bits (1426), Expect = 1.150e-175 Identity = 308/526 (58.56%), Postives = 377/526 (71.67%), Query Frame = 1 Query: 910 KQEVNQEQLLANQDEMLERIRNLPRTPVKLAKVPDGMPVRKTWHVERRDVMETVLDELTHGGLPRLVGLVGDSGAGKTTAASEIVRSKEVREAFSDGIVWLTVNEGAKDRLPFLMTQLARMVFKGVGGRVGRQPAEPDDGAAYVKKCMQKGHGGEGLKCLVVADNVWEVEVVSKLLETGMSILVSTRNAELVAE-HGAVVGVDELSEADAESVLRRAAELPPDVRLPDDAADLIELCGRVAMDLAFVGRWSTVRGRRDRRAWLNAARKVRAEMKRAG-GDPENRLTETSRTKRRKAVLQAGFEDLATGVDDERVQRLYLSLSMLPDAHGFTLKDAAVLLHDGAPDAQDEASMFGVVEILERWSVLRSVKRWCLGTQHDWTVYFMHDAHSAFARENLMDRGNVRRPALERWMRYLSSLSTLRTHATSELKALWVAAENVGGASWTQARPYVKALGTIDGSDPLLCRSTA-ALARFQLAQSDWDGATTTCRQLVEVDVAGFLND-YGLHLEVQSLCKLFRKAGRLGES 2475 KQ +QE++L NQ ++L+ + L +T KL KVP G P RK+W+V+RR VM+TV + L G PRLVGLVG SG+GKTT ASE VRS EV+EAFSDGI WL+VN+GAK+RL LM QLAR+V++ +G VGR+P DD AAY+++ M+KG GG+ LKCLVVADNVWE EVVSKLLETGM +L+STRN LV E HG VVGVDELSEADA SVLRRAAELPP ++P DA DLIELCGRVAMDLAFVGRWSTVRGR+DR AW +A KVR EM + G GD +L ET R RRKA+L+AGFEDLA G DDERVQRLYLSL++ PD H FT++DAAVLL+D P A+DEAS+ VV+ LERW+VLRS + Y MHDAHS FARE LMD G VRRPA++RW+ +S L LR+ LK LW+A E VGG W ++R Y AL +D L R ALAR Q A DW+GA+TT R+L+E++ D Y + +SL + G++GE+ Sbjct: 4 KQAASQERILENQSKILDHMDQLSKTQAKLTKVPKGTPARKSWYVKRRHVMDTVFEGLASDGGPRLVGLVGGSGSGKTTVASESVRSTEVQEAFSDGIAWLSVNDGAKERLSSLMLQLARVVYEDIGCSVGRRPTSSDDCAAYIRQRMKKGTGGKKLKCLVVADNVWEKEVVSKLLETGMWVLLSTRNITLVTEAHGEVVGVDELSEADAMSVLRRAAELPPQGKIPGDAVDLIELCGRVAMDLAFVGRWSTVRGRQDRMAWSDAVSKVREEMGKVGSGDASEKLAET-RDARRKAILRAGFEDLAIGSDDERVQRLYLSLAVFPDGHAFTVRDAAVLLYDREPCAEDEASVAVVVDTLERWTVLRSEQG----------AYRMHDAHSIFARETLMDHGYVRRPAVKRWVSSISCLEVLRSSDPYVLKGLWLAVEGVGGDGWLKSRAYSAALVGMDRLHSALARQNIIALARLQEAHEDWEGASTTWRRLLEIEKKQLGADHYHVLKSYRSLASCAEQLGQVGEA 518
BLAST of mRNA_C-linearis_contig10.526.1 vs. uniprot
Match: D8LFN6_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFN6_ECTSI) HSP 1 Score: 442 bits (1138), Expect = 6.540e-134 Identity = 286/678 (42.18%), Postives = 394/678 (58.11%), Query Frame = 1 Query: 424 SSDATAEAAKLALRIGSKAADVISFLADLGEELPSISPVLKTLTAIREKVETVSSNHDELKALEERCTYVTACVVVKCKQNSRSEINLTPLEDCVKAAWKVVERCSRRGRMTRVLKASGEKEELAGLNARVDRLTGDLGLSGIAIVEGKTDDLKALLERVGAKQEVNQEQLLANQDEMLERIRNLPRTPVKLAKVPDGMPVRKTWHVERRDVMETVLDELTHGGLPRLVGLVGDSGAGKTTAASEIV------------------RSKEVREAFSDGIVWLTVNEG--AKDRLPFLMTQLARMVFKGVGGRVGRQP-AEPDDG-AAYVKKCMQ-KGHGGEGLKCLVVADNVWEVEVVSKLLETGMSILVSTRNAELVAE-HGAVVGVDELSEADAESVLRRAAELPPDVRLPDDAADLIELCGRVAMDLAFVGRWSTVRGRRDRRAWLNAARKVRAEMKRAGGDPENRLTETSRTK-RRKAVLQAGFEDLATGVDDERVQRLYLSLSMLPDAHGFTLKDAAVLLHDGAPDAQDEASMFGVVEILERWSVLRSVKRWCLGTQHDWTVYFMHDAHSAFARENLMDRGNVRRPALERWMRYLSSLSTLRTHATSELKALWVAAENVGGASWTQARPYVKALGTIDGSDPLLCRSTAALARFQLAQSDWDGATTTCRQLVEV 2382 SS A EAA++ L++GS AAD++ F +LG E+P + VLKTL AIR + E V SN + LKALEERCTYVTACV+VK +Q S SE+N+ PLE CV AA + RCSRRG R KAS + +EL LN+RVD LTGDLGL+GIA ++ K DDLKA+L V A+ N V +A VP+G PV +WHV R V++ V + L+ G P++VGLVG SG+GKTT A+ IV R VRE F DG+VWL V G + +R+P LM+QLA+ VF+ + G P A P G +A++ ++ KG +CLVVAD+VWEV+++ +L TGM +L ++R+ +LV G+VV VD+LS+A+AE +LR AAEL LP AA +IE C R+A L FVGRWSTV+G D W A + AEM G+ + ++ + +R A+L+AGF DLA + LYLSL+++PD F K+AAV L D A++ AS + + V+ ++++W + T H ++ MHDAHS FAR L +VR AL RW + S L T+R+ E+ LW A E +GG SW +RPY AL ++ S P S A+ F + + W+ +L+ V Sbjct: 48 SSGAPEEAARVFLKMGSTAADIVMFTEELGGEVPVVGAVLKTLKAIRLRFEAVQSNTERLKALEERCTYVTACVIVKWRQTSSSEMNVAPLESCVNAAEDFIARCSRRGLCGRCTKASSDNDELLTLNSRVDSLTGDLGLAGIASLDAKVDDLKAMLAEVIAQ--------------------NTMPASVPVAAVPNGKPVEHSWHVARDRVVDAVYEHLSCGQTPQVVGLVGRSGSGKTTCAASIVGESTGRRHQNETGDQMLRRLNRVREHFRDGVVWLRVGRGGGSAERVPALMSQLAKTVFEDLKHSYGFAPGASPTGGGSAFISDFVRGKGSAAGRKRCLVVADDVWEVDILEELRHTGMWVLFTSRDPDLVERVEGSVVPVDQLSKAEAECLLRGAAELSTGSSLPSAAAQVIERCDRMANRLEFVGRWSTVKGSDDEEDWAEAVSAIDAEMSAMAGEANAQKSDEDLSGVKRVAILRAGFLDLAAQNGFNPL--LYLSLAVMPDGRAFGAKEAAVFLFDDW--AEERASQRRTRQAAK---VVANLEQWAVVTMHG-NLFRMHDAHSDFARNKLKRSEDVRASALRRWRGFTSRLDTIRSMDYFEMVDLWHATEMIGGESWRVSRPYHVALDSLRDSSPECIPSLKAVVEFGINECAWEVTHDVALRLLRV 697
BLAST of mRNA_C-linearis_contig10.526.1 vs. uniprot
Match: D7G5K4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5K4_ECTSI) HSP 1 Score: 308 bits (789), Expect = 8.210e-92 Identity = 180/314 (57.32%), Postives = 226/314 (71.97%), Query Frame = 1 Query: 427 SDATAEAAKLALRIGSKAADVISFL-ADLGEELPSISPVLKTLTAIREKVETVSSNHDELKALEERCTYVTACVVVKCKQNSR--SEINLTPLEDCVKAAWKVVERCSRRGRMTRVLKASGEKEELAGLNARVDRLTGDLGLSGIAIVEGKTDDLKAL-LERVGAKQEVNQEQLLANQDEMLERIRNLPRTPVKLAKVPDGMPVRKTWHVERRDVMETVLDELTHGGLPRLVGLVGDSGAGKTTAASEIVRSKEVREAFSDGIVWLTVNEGAKDRLPFLMTQLARMVFKGVGGRVGRQPAEPDDGA-AYVKKCM 1353 SDA EAA LAL++GS A D+ISF+ G ELP + VLKTLTA+RE VETV N DEL ALE+RCTY+TA V+VK +Q + S +++TPL+DCV A K ERC +R ++KA K+ELA LNAR+DRL GDLGL+GIA V G+ DLK + LE++ + Q Q++LLANQ+ +++R LP+ P K A +P G P+RK+WHVERR VM+TV++ LT P LVGLVGDSGAGKTTAASE+V S VRE+FSDGIVWL VN GA RLP LM QLARMV + +GG VG +P E D A AY+K+ M Sbjct: 6 SDAAVEAANLALKMGSTAVDMISFVHRGDGGELPVVGTVLKTLTAMRETVETVQQNRDELAALEKRCTYMTASVIVKFRQIPQPGSGLDVTPLKDCVVVAEKFAERCKKRRMRWEIVKAFSVKDELATLNARIDRLVGDLGLAGIATVLGEVADLKGMMLEQMVSDQAAAQKELLANQEIVIDR---LPKPPTKKADIPQGTPMRKSWHVERRHVMDTVVEALTGEAGPHLVGLVGDSGAGKTTAASELVGSNVVRESFSDGIVWLAVNYGANKRLPSLMLQLARMVHEDIGGCVGGRPNESGDNADAYIKQRM 316
BLAST of mRNA_C-linearis_contig10.526.1 vs. uniprot
Match: A0A6H5JSI2_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI2_9PHAE) HSP 1 Score: 318 bits (815), Expect = 1.570e-85 Identity = 249/703 (35.42%), Postives = 349/703 (49.64%), Query Frame = 1 Query: 505 DLGEELPSISPVLKTLTAIREKVETVSSNHDELKALEERCTYVTACVVVKCKQNSRSEINLTPLEDCVKAAWKVVERCSRRGRMTRVLKASGEKEELAGLNARVDRLTGDLGLSGIAIVEGKTDDLKALLERVGAKQEVNQEQLLANQDEMLERIRNLPRTPVKLAKVPDGMPVRKTWHVERRDVMETVLDELTHGGLPRLVGLVGDSGAGKTTAASEIV--RSKEVREAFSDGIVWLTVNE--GAKDRLPFLMTQLARMVFKGVGGRVGRQPAEPDDGAAYVKKCMQKGHGGEGLKCLVVADNVWEVEVVSKLLETGMSILVSTRNAELVAEHGAVVGVDELSEADAESVLRRAAELPPDVRLPDDAADLIELCGRVAMDLAFVGRWSTVRGR----RDRRAWLNAARKVRAEMKRAGGDPE--NRLTETSRTKRRKAVLQAGFEDLATGVDDERVQRLYLSLSMLPDAHGFTLKDAAVLLHDGAPDAQDEASMFGVVEILERWSVLRSVKRWCLGTQHDWTVYFMHDAHSAFARENLMDRGNVRRPALERWMRYLSSLSTLRTHATSELKALWVAAENVGGASWTQARPYVKALGTIDGSDPLLCRSTAALARFQLAQSDWDGATTTCRQLVEVDVAGFLNDYGLHLEVQSLCKLFRKAGRLGES----EKLLRLFVAITEAKDGPDTTQVAKRLRGLSEC 2571 ++G P ++P+ L + V+ S N +EL+ L ERC +T V+ K K + S I++ PL++CV +V ER RGR+ R+ + + E++ L R++ + +GLSG+ VN + L D++L R++ P KLA VP P K++HV R V++ V L G P + L G SGAGKTT+A+ +V R VR F DG+VWL V G DRLP LM+ LA+ + + V P DDG +YV+K + + E L+CLVVAD+VWE VV KL ETGM +L++TR E+ VV +D L A+AE VLR AAELP RL D + ++E+CGRVAMD AFVG W++VR + +AW ++ A++ G + N + R R AVL+AGF+ + G +D Q LY+ L++ P+ F DAAVLL ++E G + ILERW VLR+ Y HDAH+ FAR+ LMDR ++R PA+ERW ++S L L +W A E VGG W RPY L + S+P +T+ GA V +L + RK G L E E L R + I EA GPD QVA L+ L C Sbjct: 32 EIGASAPVVAPLCTALLKAKGVVDAASRNKEELEELHERCEMITIQVIDKAKASKTSTIDVKPLQECVDKLKEVAERYHDRGRLARLAQFRRDGEDIQRLRKRIEDVVPIMGLSGV----------------------VNNGEKL---DQILARLQPGP----KLAPVPKKAPFTKSFHVVRDGVVDRVCKILGGDGGPAMAALTGGSGAGKTTSAAAMVGERGDRVRALFPDGVVWLWVGREAGTADRLPSLMSNLAKRLHEDVMKGAVDAPTG-DDGVSYVRKIVSQ----EKLRCLVVADDVWEASVVQKLRETGMWVLLTTRFPEMGEPEERVV-MDTLIPAEAEDVLRGAAELPLGERLCDASMKVLEICGRVAMDTAFVGSWTSVRTTNGVPKSNKAWERTVEELTAQIDHVRGQMKVGNTGEDNDRAINRLAVLRAGFKYI--GREDPLAQELYVKLAVFPEGFLFGESDAAVLL-------ENEEVAKGPISILERWGVLRTDAS---------EKYRTHDAHADFARKKLMDRNDLREPAVERWTEHISRLDFAVGVEIFVLLPMWRALEEVGGKGWWALRPYDDQLIQMVTSNPATSYATS-------------GAVGV---------------------VMNLYRGARKLGELAEIMKRVEPLFRRALEIEEATLGPDDIQVAVTLQELGLC 647 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.526.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.526.1 >prot_C-linearis_contig10.526.1 ID=prot_C-linearis_contig10.526.1|Name=mRNA_C-linearis_contig10.526.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=996bp MAAGLSSDATAEAAKLALRIGSKAADVISFLADLGEELPSISPVLKTLTAback to top mRNA from alignment at C-linearis_contig10:1775145..1784432- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.526.1 ID=mRNA_C-linearis_contig10.526.1|Name=mRNA_C-linearis_contig10.526.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=9288bp|location=Sequence derived from alignment at C-linearis_contig10:1775145..1784432- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:1775145..1784432- >mRNA_C-linearis_contig10.526.1 ID=mRNA_C-linearis_contig10.526.1|Name=mRNA_C-linearis_contig10.526.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=5976bp|location=Sequence derived from alignment at C-linearis_contig10:1775145..1784432- (Chordaria linearis ClinC8C monoicous)back to top |