mRNA_C-linearis_contig10.516.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig10.516.1 vs. uniprot
Match: D7FZW7_ECTSI (DUF2470 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW7_ECTSI) HSP 1 Score: 480 bits (1235), Expect = 2.490e-164 Identity = 248/283 (87.63%), Postives = 264/283 (93.29%), Query Frame = 1 Query: 280 EEAGHSPPKATGHAAGKGPQRTPEEEALSARIKEHQDGAARLSKTEEVRNLMQYSTGFGVLSTNSKSIEGYPSGSVVGFSLDEMGRPLFAFSSLSAHTGDLEASSHASLTVTSATFKGAADGRVGLIGDVNKVPDEDLPSVREMYKKKHPNAYWVDFGDFRLMRMDTIKAMRFVGGFAMAGDVKPEDYLETAPDAVAEFSALILEHMNDDHSETTRAMIKHYITG-VEVASAQITAVDRLGMYVVVGMPDGQSGKLRLPFPRPAESRKDVKTLIVEMTQAAAA 1125
E +GHSPPKATGHAAG GPQR+PE+EAL+ARI+EHQ AARLS TEEVRNLMQYSTGFGVLSTNS+++EGYPSGSVVGFSLD+ GRPLFAFSS+SAHTGDL A S SLTVT+ATFKGAADGRV LIGDVNKVP+EDLPSVREMYKKKHPNAYWVDFGDFRLMRMDTIKAMRFVGGFAMAGDV PEDYL TAPDAVAEFSA I +HMNDDHS+TTRAMI H+ITG VEV SAQITAVDRLGMYV+VGMPDGQSGKLRLPFPRPAESRKDVKTLIVEMTQAA A
Sbjct: 17 EASGHSPPKATGHAAGPGPQRSPEQEALAARIQEHQQAAARLSHTEEVRNLMQYSTGFGVLSTNSRTLEGYPSGSVVGFSLDDKGRPLFAFSSMSAHTGDLAADSRVSLTVTAATFKGAADGRVSLIGDVNKVPEEDLPSVREMYKKKHPNAYWVDFGDFRLMRMDTIKAMRFVGGFAMAGDVNPEDYLTTAPDAVAEFSAPISKHMNDDHSDTTRAMIAHFITGGVEVTSAQITAVDRLGMYVLVGMPDGQSGKLRLPFPRPAESRKDVKTLIVEMTQAAMA 299
BLAST of mRNA_C-linearis_contig10.516.1 vs. uniprot
Match: A0A836CG39_9STRA (DUF2470 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG39_9STRA) HSP 1 Score: 347 bits (890), Expect = 1.600e-112 Identity = 182/273 (66.67%), Postives = 218/273 (79.85%), Query Frame = 1 Query: 310 TGHAA-GKGPQRTPEEEALSARIKEHQDGAARLSKTEEVRNLMQYSTGFGVLSTNSKSIEGYPSGSVVGFSLDEMGRPLFAFSSLSAHTGDLEASSHASLTVTSATFKGAADGRVGLIGDVNKVPDEDLPSVREMYKKKHPNAYWVDFGDFRLMRMDTIKAMRFVGGFAMAGDVKPEDYLETAPDAVAEFSALILEHMNDDHSETTRAMIKHYITG-VEVASAQITAVDRLGMYVVVGMPDGQSGKLRLPFPRPAESRKDVKTLIVEMTQAAA 1122
TGH G GPQRTPE+EALSARI+EHQ AARL+K EEV+ L+ YSTGFGVLSTNSK +EGYP+GSVVGF LD+ GRPLFAFS++SAHT DL A AS+T+ +A FKGA+DGRV LIGDV +VP++++ +VR YK KHPNA+WVDFGDF RMDTIKA+RFVGGFAMAGD+ EDYL T PD +A F+ I+ HMN DHS++T AM++HYITG +V SA + VDR GM V+V M G+SGKLRLPFP PA+ RK VK IVEMT+AAA
Sbjct: 10 TGHQPRGGGPQRTPEQEALSARIQEHQRSAARLTKAEEVKTLVAYSTGFGVLSTNSKKLEGYPNGSVVGFGLDDAGRPLFAFSTMSAHTSDLGADGRASMTIMAANFKGASDGRVTLIGDVGRVPEDEIEAVRTSYKVKHPNAFWVDFGDFSWFRMDTIKAIRFVGGFAMAGDITSEDYLATKPDPIAGFAEPIMTHMNSDHSDSTAAMVEHYITGGAKVDSATLVGVDRKGMNVLVAM-GGESGKLRLPFPSPADDRKAVKDRIVEMTRAAA 281
BLAST of mRNA_C-linearis_contig10.516.1 vs. uniprot
Match: A0A7S4EVY0_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4EVY0_CHRCT) HSP 1 Score: 298 bits (764), Expect = 2.270e-92 Identity = 157/275 (57.09%), Postives = 204/275 (74.18%), Query Frame = 1 Query: 313 GHAAGKGPQRTPEEEALSARIKEHQDGAARLSKTEEVRNLMQYSTGFGVLSTNSKSIEGYPSGSVVGFSLDEMGRPLFAFSSLSAHTGDLEAS---SHASLTVTSATFKGAADGRVGLIGDVNKVPDEDLPSVREMYKKKHPNAYWVDFGDFRLMRMDTIKAMRFVGGFAMAGDVKPEDYLETAPDAVAEFSALILEHMNDDHSETTRAMIKHYITGVEVASAQITAVDRLGMYVVVGMPDGQSGKLRLPFPRPAESRKDVKTLIVEMTQAAAAA 1128
GH P+ + EE+A+ A++ HQ AARLSK E+ R+L+ YSTG+GVLST SKS+ G+PSGSVVGF++D+ G P+F FS +S H DL AS + A+LTVT+ FKGAA+GRV L+G V +VP ++ +RE+Y+ KHPNA+WVDFGDF +MD +KA+RFVGGFA AGD+ PE+Y++ D + F+ ++EHMN DHS+ T M++HYI EV A++ A+DRLGM V V GQS KLRLPFPRPAESRKDVKTLIVEMTQA+A A
Sbjct: 98 GHQVRNAPELSEEEKAVQAKVMAHQQDAARLSKAEDSRSLVAYSTGYGVLSTMSKSLPGFPSGSVVGFAIDDKGLPIFCFSGMSGHAQDLLASPDAAPAALTVTANDFKGAAEGRVTLVGTVRRVPSDEADPLREIYRAKHPNAFWVDFGDFSWFKMDELKAVRFVGGFARAGDMTPEEYMQAEVDPIQAFAKPVMEHMNADHSDATTLMVQHYIGLPEVEDAKVAALDRLGMTVQVTR-KGQSFKLRLPFPRPAESRKDVKTLIVEMTQASAKA 371
BLAST of mRNA_C-linearis_contig10.516.1 vs. uniprot
Match: A0A7S4FQ63_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FQ63_9EUGL) HSP 1 Score: 286 bits (731), Expect = 1.770e-87 Identity = 146/266 (54.89%), Postives = 198/266 (74.44%), Query Frame = 1 Query: 334 PQRTPEEEALSARIKEHQDGAARLSKTEEVRNLMQYSTGFGVLSTNSKSIEGYPSGSVVGFSLDEMGRPLFAFSSLSAHTGDLEASSHASLTVTSATFKGAADGRVGLIGDVNKVPDEDLPSVREMYKKKHPNAYWVDFGDFRLMRMDTIKAMRFVGGFAMAGDVKPEDYLETAPDAVAEFSALILEHMNDDHSETTRAMIKHYITGVEVASAQITAVDRLGMYVVVGMPDGQSGKLRLPFPRPAESRKDVKTLIVEMTQAAAAAA 1131
P+ + EE L+ ++EHQ AARLS E+ RN+MQY TG+GV+STNS+S +GYPSGS+VG++ D+ GRP+F+FS++S+HT D++ SLTVT FKGAADGRV L GD+ +VP E+ +V MY KKHP+A+WV FGDF RM+ IK +R++GGFA AG + PE+Y TAPDA+A F+ ++ HMN DH + AM+ HY+ ++V +A I +DRLGM ++V +GQS KLRLPFPRPA +RK+VK LIVEMT+A+A AA
Sbjct: 104 PKMSEEEMKLAQALQEHQKEAARLSHAEDARNMMQYGTGYGVISTNSESDDGYPSGSIVGYAPDDKGRPVFSFSTMSSHTQDIQKDPRVSLTVTVEGFKGAADGRVSLTGDLVRVPKEEKEAVAAMYLKKHPDAFWVQFGDFSWWRMENIKTIRYIGGFARAGSITPEEYEATAPDAIAAFATPVMSHMNADHGDANVAMVNHYLP-IQVEAANIVGLDRLGMDMMVTR-EGQSFKLRLPFPRPATNRKEVKDLIVEMTKASAKAA 367
BLAST of mRNA_C-linearis_contig10.516.1 vs. uniprot
Match: A0A7S3U682_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3U682_9SPIT) HSP 1 Score: 272 bits (696), Expect = 2.200e-82 Identity = 146/271 (53.87%), Postives = 195/271 (71.96%), Query Frame = 1 Query: 313 GHAAGKGPQRTPEEEALSARIKEHQDGAARLSKTEEVRNLMQYSTGFGVLSTNSKSIEGYPSGSVVGFSLDEMGRPLFAFSSLSAHTGDL---EASSHASLTVTSATFKGAADGRVGLIGDVNKVPDED-LPSVREMYKKKHPNAYWVDFGDFRLMRMDTIKAMRFVGGFAMAGDVKPEDYLETAPDAVAEFSALILEHMNDDHSETTRAMIKHYITGVEVASAQITAVDRLGMYVVVGMPDGQSGKLRLPFPRPAESRKDVKTLIVEMTQ 1113
GH PQ + EE+ + A + EHQ GAARLS+ E+ R+L+ YS+G+ VLST SK ++GYPSGS+VGF+ D+ G PLF FS++S+HT DL + A+LTVT+ F+GAADGRV L+GDV +V DE+ L ++R+ Y++KHP+A+WVDFGDF RM +KA+RFVGGFA AGD+ P+DY D + F+ ++ HMN+DHS++T AM+ HYI +V A + A+DRLG V V GQ+ KLRLPFPR AE RKDVK LIV+MTQ
Sbjct: 64 GHQVTGAPQLSEEEKKVQAAVMEHQKGAARLSQAEDARSLIGYSSGYAVLSTLSKQLDGYPSGSLVGFATDDKGLPLFCFSAMSSHTQDLMRDPKGAKAALTVTATGFEGAADGRVTLVGDVARVKDEEELVTLRKTYREKHPDAFWVDFGDFSWWRMRELKAVRFVGGFARAGDIAPDDYQAATVDPIQAFAKPVMNHMNEDHSDSTIAMVMHYIGLNQVEKASLVALDRLGFMVQVTRL-GQTFKLRLPFPRAAEDRKDVKNLIVQMTQ 333
BLAST of mRNA_C-linearis_contig10.516.1 vs. uniprot
Match: A0A6T8CG84_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A6T8CG84_9EUKA) HSP 1 Score: 267 bits (682), Expect = 2.100e-81 Identity = 139/258 (53.88%), Postives = 188/258 (72.87%), Query Frame = 1 Query: 349 EEEALSARIKEHQDGAARLSKTEEVRNLMQYSTGFGVLSTNSKSIEGYPSGSVVGFSLDEMGRPLFAFSSLSAHTGDLEASSHASLTVTSATFKGAADGRVGLIGDVNKVPDEDLPS--VREMYKKKHPNAYWVDFGDFRLMRMDTIKAMRFVGGFAMAGDVKPEDYLETAPDAVAEFSALILEHMNDDHSETTRAMIKHYITGVEVASAQITAVDRLGMYVVVGMPDGQSGKLRLPFPRPAESRKDVKTLIVEMTQA 1116
EE+ + + EHQ GAARLS+ E+ R+L+ Y++G+ VLST SK+++GYPSGS+VGF+ DE G P+F FS++S HT DL + A+L VT+ F+GAADGRV LIGDV + E++ + ++E+Y+ KHPNA+WVDFGDF RM +KA+ FVGGFA AG+ P DY++ + D + F+A ++ HMN DHSE+T AM+ HYI +V A++ +DRLG V V GQ+ KLRLPFPR AE RKDVKTLIV+MTQA
Sbjct: 3 EEKRVQTAVMEHQRGAARLSQAEDSRSLVAYNSGYAVLSTLSKAVDGYPSGSLVGFATDEKGLPVFCFSAMSGHTKDLAKAGKAALCVTAKGFEGAADGRVTLIGDVKRCSKEEVEADGLKELYRAKHPNAFWVDFGDFTWYRMTELKAVNFVGGFARAGNPSPADYMDASVDPIQAFAAPVMGHMNADHSESTIAMVMHYIGLPQVEKAELVQLDRLGFMVQVTR-TGQTFKLRLPFPRAAEDRKDVKTLIVQMTQA 259
BLAST of mRNA_C-linearis_contig10.516.1 vs. uniprot
Match: A0A7S0LER7_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LER7_9EUKA) HSP 1 Score: 270 bits (689), Expect = 2.960e-81 Identity = 146/278 (52.52%), Postives = 193/278 (69.42%), Query Frame = 1 Query: 313 GHAAGKGPQRTPEEEALSARIKEHQDGAARLSKTEEVRNLMQYSTGFGVLSTNSKSIEGYPSGSVVGFSLDEMGRPLFAFSSLSAHTGDL-------EASSHASLTVTSATFKGAADGRVGLIGDVNKVPDEDLPS--VREMYKKKHPNAYWVDFGDFRLMRMDTIKAMRFVGGFAMAGDVKPEDYLETAPDAVAEFSALILEHMNDDHSETTRAMIKHYITGVEVASAQITAVDRLGMYVVVGMPDGQSGKLRLPFPRPAESRKDVKTLIVEMTQAA 1119
GHA P+ + EE+ + + EHQ AARLS+ E+ R+L+ YSTG+ VLST S +++GYPSG++VGF+ DE G P F FS++S+HT DL E+ A+L VT+ F+GAADGRV LIGDV++V E + +RE+Y++KHPNA+WVDFGDF RM +KA+ FVGGFA AG + PE Y+ D + F+A ++ HMNDDHS +T AM+ HYI +V A++ +DRLG V V GQ+ KLRLPFPRPA RKDVKTLIVEMT+AA
Sbjct: 74 GHAVRNQPELSEEEKIVQTAVMEHQRSAARLSQAEDARSLVGYSTGYAVLSTLSSALDGYPSGALVGFAHDERGLPFFCFSAMSSHTKDLVAAERSCESGGKAALCVTAKGFEGAADGRVTLIGDVSRVKKEQVEEQGLRELYRQKHPNAFWVDFGDFTFYRMHELKAINFVGGFARAGSIDPEAYMNAVIDPIQAFAAPVMSHMNDDHSSSTTAMVMHYIGLPQVEKAELVQLDRLGFMVQVTRL-GQTFKLRLPFPRPAGDRKDVKTLIVEMTRAA 350
BLAST of mRNA_C-linearis_contig10.516.1 vs. uniprot
Match: A0A6U3QPI0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3QPI0_9STRA) HSP 1 Score: 266 bits (680), Expect = 3.050e-80 Identity = 148/294 (50.34%), Postives = 191/294 (64.97%), Query Frame = 1 Query: 280 EEAGHSPPKATGH---AAGKGPQRTPEEEALSARIKEHQDGAARLSKTEEVRNLMQYSTGFGVLSTNSKSIEGYPSGSVVGFSLDEMGRPLFAFSSLSAHTGDLEASSHASLTVTSATFKGAADGRVGLIGDVNKVPDEDLPSVREMYKKKHPNAYWVDFGDFRLMRMDTIKAMRFVGGFAMAGDVKPEDYLETAPDAVAEFSALILEHMNDDHSETTRAMIKHYITGVEVASAQITAVDRLGMYVVV-----GMPDGQSGKLRLPFPRPAESRKDVKTLIVEMTQAAAAAAQK 1137
EEA A GH +AG + PEE + EHQ A +L VR L+QY+ GF V+STNSK+ GYP GSVVGF+ DE GRP+F FS +S HT DL A S+T+ + FKGAADGRV L+G V VP E+ +++++Y KHP A+WV+FGDF RMD I+ +RFVGGFA AG+V PE+Y +PD ++ F + HMNDDH ++T AMI I G++V+ A IT+VD LGMYV V Q KLRLPFPR AE RKDVK +IVEMT++AA A+++
Sbjct: 56 EEAKVEKKNAPGHDVRSAGVAQEMDPEEMKVQQAFGEHQQNAPKLDFATSVRTLVQYNHGFAVMSTNSKANPGYPGGSVVGFAPDENGRPVFIFSGMSTHTQDLLADPRCSVTIAAKEFKGAADGRVNLMGKVKLVPSEEREALKDIYLAKHPGAFWVNFGDFNWFRMDEIEDIRFVGGFARAGNVTPEEYAAASPDEISAFGMHVANHMNDDHMDSTIAMISSQIPGLDVSEAVITSVDSLGMYVKVTRTPRASDQPQQFKLRLPFPRKAEDRKDVKNIIVEMTRSAAVASKE 349
BLAST of mRNA_C-linearis_contig10.516.1 vs. uniprot
Match: R1D7B7_EMIHU (DUF2470 domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D7B7_EMIHU) HSP 1 Score: 263 bits (673), Expect = 5.000e-80 Identity = 139/265 (52.45%), Postives = 192/265 (72.45%), Query Frame = 1 Query: 334 PQRTPEEEALSARIKEHQDGAARLSKTEEVRNLMQYSTGFGVLSTNSKSIEGYPSGSVVGFSLDEMGRPLFAFSSLSAHTGDL-EASSHASLTVTSATFKGAADGRVGLIGDVNKVPDEDLPS--VREMYKKKHPNAYWVDFGDFRLMRMDTIKAMRFVGGFAMAGDVKPEDYLETAPDAVAEFSALILEHMNDDHSETTRAMIKHYITGVEVASAQITAVDRLGMYVVVGMPDGQSGKLRLPFPRPAESRKDVKTLIVEMTQAA 1119
P+ + EE+A+ A + EHQ GAARL+ E+ R+L+ YS+G+ VLST S ++GYP+G++VGF+ D G P+F FS++S+HT DL + A+LTVT+ F+GAADGRV LIGDV +V E + ++E+Y+++HPNA+WVDFGDF RM ++KA+ FVGGFA A P++YL D + F+A ++ HMNDDH+E+T AM+ HY+ +V +AQ+ A+DRLG V V GQ+ KLRLPFPR A RKDVK+LIVEMTQAA
Sbjct: 2 PELSEEEKAVQAAVMEHQRGAARLTMAEDARSLVAYSSGYAVLSTLSSQVDGYPNGALVGFAPDASGLPVFVFSAMSSHTKDLSKVGGQAALTVTAKGFEGAADGRVTLIGDVERVGKEQVEKEGLKELYRERHPNAFWVDFGDFTFYRMASLKAVNFVGGFARAAAPSPDEYLSAEVDPIQAFAAPVMGHMNDDHAESTVAMVMHYVGLPDVEAAQLVALDRLGFMVQVTR-QGQTFKLRLPFPRAAADRKDVKSLIVEMTQAA 265
BLAST of mRNA_C-linearis_contig10.516.1 vs. uniprot
Match: A0A7S3TA66_EMIHU (Hypothetical protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3TA66_EMIHU) HSP 1 Score: 266 bits (679), Expect = 6.990e-80 Identity = 141/272 (51.84%), Postives = 195/272 (71.69%), Query Frame = 1 Query: 313 GHAAGKGPQRTPEEEALSARIKEHQDGAARLSKTEEVRNLMQYSTGFGVLSTNSKSIEGYPSGSVVGFSLDEMGRPLFAFSSLSAHTGDL-EASSHASLTVTSATFKGAADGRVGLIGDVNKVPDEDLPS--VREMYKKKHPNAYWVDFGDFRLMRMDTIKAMRFVGGFAMAGDVKPEDYLETAPDAVAEFSALILEHMNDDHSETTRAMIKHYITGVEVASAQITAVDRLGMYVVVGMPDGQSGKLRLPFPRPAESRKDVKTLIVEMTQAA 1119
GHA P+ + EE+A+ A + EHQ GAARL+ E+ R+L+ YS+G+ VLST S ++GYP+G++VGF+ D G P+F FS++S+HT DL + A+LTVT+ F+GAADGRV LIGDV +V E + ++E+Y+++HPNA+WVDFGDF R+ ++KA+ FVGGFA A P++YL D + F+A ++ HMNDDH+E+T AM+ HY+ +V +AQ+ A+DRLG V V GQ+ KLRLPFPR A RKDVK+LIVEMTQAA
Sbjct: 71 GHAVRNMPELSEEEKAVQAAVMEHQRGAARLTMAEDARSLVAYSSGYAVLSTLSSQVDGYPNGALVGFAPDASGLPVFVFSAMSSHTKDLSKVGGQAALTVTAKGFEGAADGRVTLIGDVERVGKEQVEKEGLKELYRERHPNAFWVDFGDFTFYRLASLKAVNFVGGFARAAAPSPDEYLSAEVDPIQAFAAPVMGHMNDDHAESTVAMVMHYVGLPDVEAAQLVALDRLGFMVQVTR-QGQTFKLRLPFPRAAADRKDVKSLIVEMTQAA 341 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.516.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.516.1 >prot_C-linearis_contig10.516.1 ID=prot_C-linearis_contig10.516.1|Name=mRNA_C-linearis_contig10.516.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=380bp MRSFTICGASSLLLAGARAFTVSPAGKIEPLFSLPSSCARLSLAQNAYRIback to top mRNA from alignment at C-linearis_contig10:1688376..1693491- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.516.1 ID=mRNA_C-linearis_contig10.516.1|Name=mRNA_C-linearis_contig10.516.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5116bp|location=Sequence derived from alignment at C-linearis_contig10:1688376..1693491- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:1688376..1693491- >mRNA_C-linearis_contig10.516.1 ID=mRNA_C-linearis_contig10.516.1|Name=mRNA_C-linearis_contig10.516.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2280bp|location=Sequence derived from alignment at C-linearis_contig10:1688376..1693491- (Chordaria linearis ClinC8C monoicous)back to top |