mRNA_C-linearis_contig10.514.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig10.514.1 vs. uniprot
Match: A0A6H5KWP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWP7_9PHAE) HSP 1 Score: 274 bits (700), Expect = 1.470e-83 Identity = 166/189 (87.83%), Postives = 174/189 (92.06%), Query Frame = 2 Query: 146 ARTVSG---DTQLATPAPEANIPRQGHGAFDTFRFVEELEGAGVPRDQAITMMNQVLLAISEANTRQITLVATKEDLLSLQSEINEKVFSSTLRYDLAQRHLKELMQRDLSQVKADVRSEEKFDFAKLHDEITELEKRVFQRRETDEVRXXXXXXXXXXXXXXVILQYGIGFFGSVIAMGLAVARIASL 703
ART S D LATPAPEA+ PRQGHGAFDT+RFV ELE AGVP+ QA+ +M QVLLAISEANTRQI LVATK+DLLSLQSEINEKV+SSTLRYDLAQRHLKELMQRDL QVKADVRSEEKFDFAKLHDEITELEKRVFQRRETDEVRXXXXXXXXXXXXXXVILQYGIGFFGSVIAMGLAVARIA+L
Sbjct: 29 ARTFSSAPDDMLLATPAPEASNPRQGHGAFDTYRFVTELERAGVPKGQAVMIMEQVLLAISEANTRQIALVATKQDLLSLQSEINEKVYSSTLRYDLAQRHLKELMQRDLMQVKADVRSEEKFDFAKLHDEITELEKRVFQRRETDEVRXXXXXXXXXXXXXXVILQYGIGFFGSVIAMGLAVARIAAL 217
BLAST of mRNA_C-linearis_contig10.514.1 vs. uniprot
Match: D7FZX0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZX0_ECTSI) HSP 1 Score: 258 bits (658), Expect = 1.350e-77 Identity = 161/201 (80.10%), Postives = 168/201 (83.58%), Query Frame = 2 Query: 173 LATPAPEANIPRQGHGAFDTFRFVEELEGAGVPRDQAITMMNQVLLAISEANTRQITLVATKEDLLSLQSEINEKVFSSTLRYD------------------------LAQRHLKELMQRDLSQVKADVRSEEKFDFAKLHDEITELEKRVFQRRETDEVRXXXXXXXXXXXXXXVILQYGIGFFGSVIAMGLAVARIASL 703
LATPAPE + PRQGHGAFDT+RFV ELE AGVP+ QA+ +M QVLLAISEANTRQI LVATK+DLLSLQSEINEKVFSSTLRYD LAQRHLKELMQRDL QVKADVRSEEKFDFAKLHDEITELEKRVFQRRETDEVRXXXXXXXXXXXXXXVILQYGIGFFGSVIAMGLAVARIA+L
Sbjct: 3 LATPAPETSNPRQGHGAFDTYRFVTELERAGVPKGQAVMIMEQVLLAISEANTRQIALVATKQDLLSLQSEINEKVFSSTLRYDPAAPSIQSETIRRVLVGRCGCVSDLAQRHLKELMQRDLMQVKADVRSEEKFDFAKLHDEITELEKRVFQRRETDEVRXXXXXXXXXXXXXXVILQYGIGFFGSVIAMGLAVARIAAL 203
BLAST of mRNA_C-linearis_contig10.514.1 vs. uniprot
Match: A0A6A3YP61_9STRA (Uncharacterized protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3YP61_9STRA) HSP 1 Score: 104 bits (259), Expect = 2.090e-21 Identity = 68/199 (34.17%), Postives = 115/199 (57.79%), Query Frame = 2 Query: 116 SRTRLPVEPIARTVSGDTQLAT-----PAPEANIPRQGHGAFDTFRFVEELEGAGVPRDQAITMMNQVLLAISEANTRQITLVATKEDLLSLQSEINEKVFSSTLRYDLAQRHLKELMQRDLSQVKADVRSEEKFDFAKLHDEITELEKR-VFQRRETDEVRXXXXXXXXXXXXXXVILQYGIGFFGSVIAMGLAVARI 694
SRT PI R+ QLAT +++P FDT + V+ L+ G DQ+ ++ + A++++ Q ++ATK + + L++E++E+VF+STL++D+AQRH +EL++RD + +K D+R EK DF K+ EI ELEK+ + Q++ DE +LQY +GF G+++A+G A+ R+
Sbjct: 45 SRTSNQDSPILRSTLATMQLATGGRWFSTSSSDVPLH----FDTHKVVKSLQENGFSVDQSEAILQVMKDAMADSLEAQSRILATKSEHVELKAELSERVFNSTLKFDIAQRHSRELLERDFNTLKQDIRMLEKIDFDKIRMEIAELEKKFLLQKQAEDETLNELRLSMEKVEKR--MLQYAVGFAGTIMAVGAALMRL 237
BLAST of mRNA_C-linearis_contig10.514.1 vs. uniprot
Match: A0A329SD34_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SD34_9STRA) HSP 1 Score: 103 bits (258), Expect = 2.900e-21 Identity = 58/158 (36.71%), Postives = 100/158 (63.29%), Query Frame = 2 Query: 224 FDTFRFVEELEGAGVPRDQAITMMNQVLLAISEANTRQITLVATKEDLLSLQSEINEKVFSSTLRYDLAQRHLKELMQRDLSQVKADVRSEEKFDFAKLHDEITELEKR-VFQRRETDEVRXXXXXXXXXXXXXXVILQYGIGFFGSVIAMGLAVARI 694
FDT V+ L+G G DQ+ ++ + A++++ Q ++ATK + + L++E++E+VF+STL++D+AQRH +EL++RD + +K D+R EK DF K+ EI ELEK+ + Q++ DE +LQY +GF G+++A+G A+ R+
Sbjct: 83 FDTHNVVKSLQGKGFSTDQSEAILQVMKDAMADSLEAQARILATKSEHVELKAELSERVFNSTLKFDIAQRHSRELLERDFNTLKQDIRMLEKIDFDKIRMEIAELEKKFLLQKQAEDETLNELRLSMEKVEKR--MLQYAVGFAGTIMAVGAALMRL 238
BLAST of mRNA_C-linearis_contig10.514.1 vs. uniprot
Match: K3WEB9_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WEB9_GLOUD) HSP 1 Score: 102 bits (254), Expect = 3.770e-21 Identity = 56/158 (35.44%), Postives = 102/158 (64.56%), Query Frame = 2 Query: 224 FDTFRFVEELEGAGVPRDQAITMMNQVLLAISEANTRQITLVATKEDLLSLQSEINEKVFSSTLRYDLAQRHLKELMQRDLSQVKADVRSEEKFDFAKLHDEITELEKR-VFQRRETDEVRXXXXXXXXXXXXXXVILQYGIGFFGSVIAMGLAVARI 694
FDT R V+ L+ G +Q+ +++ + A++++ Q ++ATK + + L++E++E+VF+STL++D+AQRH++EL++RD + +K D+R EK DF K+ EI E+EK+ + Q++ DE +LQY +GF G+++A+G A+ R+
Sbjct: 43 FDTHRVVKRLQEQGFSAEQSEAILDVMKDAMADSLDAQSRILATKSEHVELKAELSERVFNSTLKFDIAQRHMRELLERDFNNLKQDIRMLEKIDFDKIRVEIAEIEKKFLLQKQAEDETLNELRLSMEKVEKR--MLQYAVGFAGTIMAVGAALMRL 198
BLAST of mRNA_C-linearis_contig10.514.1 vs. uniprot
Match: D0NG13_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NG13_PHYIT) HSP 1 Score: 101 bits (251), Expect = 2.410e-20 Identity = 57/158 (36.08%), Postives = 100/158 (63.29%), Query Frame = 2 Query: 224 FDTFRFVEELEGAGVPRDQAITMMNQVLLAISEANTRQITLVATKEDLLSLQSEINEKVFSSTLRYDLAQRHLKELMQRDLSQVKADVRSEEKFDFAKLHDEITELEKR-VFQRRETDEVRXXXXXXXXXXXXXXVILQYGIGFFGSVIAMGLAVARI 694
FDT V+ L+ G DQ+ +++ + A++++ Q ++ATK + + L++E++E+VF+STL++D+AQRH +EL++RD + +K D+R EK DF K+ EI ELEK+ + Q++ DE +LQY +GF G+++A+G A+ R+
Sbjct: 82 FDTHNVVKSLQDRGFSTDQSEAILHVMKDAMADSLEAQSRILATKSEHVELKAELSERVFNSTLKFDIAQRHSRELLERDFNTLKQDIRMLEKIDFDKIRMEIAELEKKFLLQKQAEDETLNELRLSMEKVEKR--MLQYAVGFAGTIMAVGAALMRL 237
BLAST of mRNA_C-linearis_contig10.514.1 vs. uniprot
Match: G4YRP2_PHYSP (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4YRP2_PHYSP) HSP 1 Score: 99.0 bits (245), Expect = 4.000e-20 Identity = 60/161 (37.27%), Postives = 100/161 (62.11%), Query Frame = 2 Query: 224 FDTFRFVEELEGAGVPRDQA---ITMMNQVLLAISEANTRQITLVATKEDLLSLQSEINEKVFSSTLRYDLAQRHLKELMQRDLSQVKADVRSEEKFDFAKLHDEITELEKR-VFQRRETDEVRXXXXXXXXXXXXXXVILQYGIGFFGSVIAMGLAVARI 694
FDT V+ L+ G DQ+ + +M + + A EA +R ++ATK + + L++E++E+VF+STL++D+AQRH +EL++RD + +K D+R EK DF K+ EI ELEK+ + Q++ DE +LQY +GF G+++A+G A+ R+
Sbjct: 27 FDTHNVVKSLQERGFTVDQSEAILQVMKEAMAASLEAQSR---ILATKSEHVELKAELSERVFNSTLKFDIAQRHSRELLERDFNTLKQDIRMLEKIDFDKIRMEIAELEKKFLLQKQAEDETLNELRLSMEKVEKR--MLQYAVGFAGTIMAVGAALLRL 182
BLAST of mRNA_C-linearis_contig10.514.1 vs. uniprot
Match: W2H4H8_PHYPR (Uncharacterized protein n=13 Tax=Phytophthora TaxID=4783 RepID=W2H4H8_PHYPR) HSP 1 Score: 100 bits (249), Expect = 4.150e-20 Identity = 57/158 (36.08%), Postives = 99/158 (62.66%), Query Frame = 2 Query: 224 FDTFRFVEELEGAGVPRDQAITMMNQVLLAISEANTRQITLVATKEDLLSLQSEINEKVFSSTLRYDLAQRHLKELMQRDLSQVKADVRSEEKFDFAKLHDEITELEKR-VFQRRETDEVRXXXXXXXXXXXXXXVILQYGIGFFGSVIAMGLAVARI 694
FDT V+ L+ G DQ+ ++ + A++++ Q ++ATK + + L++E++E+VF+STL++D+AQRH +EL++RD + +K D+R EK DF K+ EI ELEK+ + Q++ DE +LQY +GF G+++A+G A+ R+
Sbjct: 79 FDTHNVVKSLQDKGFSPDQSEAILQVMKDAMADSLEAQSRILATKSEHVELKAELSERVFNSTLKFDIAQRHSRELLERDFNTLKQDIRMLEKIDFDKIRMEIAELEKKFLLQKQAEDETLNELRLSMEKVEKR--MLQYAVGFAGTIMAVGAALLRL 234
BLAST of mRNA_C-linearis_contig10.514.1 vs. uniprot
Match: A0A8J5ITH5_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5ITH5_9STRA) HSP 1 Score: 98.2 bits (243), Expect = 6.680e-20 Identity = 57/158 (36.08%), Postives = 100/158 (63.29%), Query Frame = 2 Query: 224 FDTFRFVEELEGAGVPRDQAITMMNQVLLAISEANTRQITLVATKEDLLSLQSEINEKVFSSTLRYDLAQRHLKELMQRDLSQVKADVRSEEKFDFAKLHDEITELEKR-VFQRRETDEVRXXXXXXXXXXXXXXVILQYGIGFFGSVIAMGLAVARI 694
FDT V+ L+G +DQ+ ++ + A++++ Q ++ATK + + L++E++E+VF+STL++D+AQRH +EL++RD + +K D+R EK DF K+ EI ELEK+ + Q++ DE +LQY +GF G+++A+G A+ R+
Sbjct: 27 FDTHNVVKSLQG----KDQSEAILQVMKDAMADSLEAQARILATKSEHVELKAELSERVFNSTLKFDIAQRHSRELLERDFNTLKQDIRMLEKIDFDKIRMEIAELEKKFLLQKQAEDETLNELRLSMEKVEKR--MLQYAVGFAGTIMAVGAALMRL 178
BLAST of mRNA_C-linearis_contig10.514.1 vs. uniprot
Match: A0A0P1ADT0_PLAHL (Uncharacterized membrane protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ADT0_PLAHL) HSP 1 Score: 99.0 bits (245), Expect = 7.860e-20 Identity = 56/158 (35.44%), Postives = 99/158 (62.66%), Query Frame = 2 Query: 224 FDTFRFVEELEGAGVPRDQAITMMNQVLLAISEANTRQITLVATKEDLLSLQSEINEKVFSSTLRYDLAQRHLKELMQRDLSQVKADVRSEEKFDFAKLHDEITELEKR-VFQRRETDEVRXXXXXXXXXXXXXXVILQYGIGFFGSVIAMGLAVARI 694
FDT V+ L+ G Q+ +++ + A++++ Q ++ATK + + L++E++E+VF+STL++D+AQRH +EL++RD + +K D+R EK DF K+ EI ELEK+ + Q++ DE +LQY +GF G+++A+G A+ R+
Sbjct: 54 FDTHHVVQSLQEKGFSIQQSEAILDVMKDAMADSLVAQARILATKSEHVELKAELSERVFNSTLKFDIAQRHSRELLERDFNTLKQDIRMLEKIDFDKIRMEIAELEKKFLLQKQAEDETLNELRLSMEKVEKR--MLQYAVGFAGTIMAVGAALLRL 209 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.514.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.514.1 >prot_C-linearis_contig10.514.1 ID=prot_C-linearis_contig10.514.1|Name=mRNA_C-linearis_contig10.514.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=210bp MQGRALVVGTRLASRTRLPVEPIARTVSGDTQLATPAPEANIPRQGHGAFback to top mRNA from alignment at C-linearis_contig10:1657257..1661706+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.514.1 ID=mRNA_C-linearis_contig10.514.1|Name=mRNA_C-linearis_contig10.514.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4450bp|location=Sequence derived from alignment at C-linearis_contig10:1657257..1661706+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:1657257..1661706+ >mRNA_C-linearis_contig10.514.1 ID=mRNA_C-linearis_contig10.514.1|Name=mRNA_C-linearis_contig10.514.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1260bp|location=Sequence derived from alignment at C-linearis_contig10:1657257..1661706+ (Chordaria linearis ClinC8C monoicous)back to top |