mRNA_C-linearis_contig10.512.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig10.512.1 vs. uniprot
Match: A0A6H5KRK8_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRK8_9PHAE) HSP 1 Score: 309 bits (791), Expect = 2.680e-90 Identity = 171/288 (59.38%), Postives = 197/288 (68.40%), Query Frame = 2 Query: 320 MPANLGDTTAEAAGLALKIGSAAADAMSFVADLGEELPLVQPALKTLRDIGEKVQTTKSNPEKLAALHQRCAHIAACFIVKCRQGSSELDVAPLEDCVKAVEKLVSRCSRRSTLSRVLKASSDKDEILRPKERIKELEGGLSLAGIAIL---------------------MGKWQAAQQRDTLANQEAVLGHFPKPPAKLASVPKGTPPRKSWHVERRQVTESVFGALAGDGEPRLVGLVGNSGSGKTTAALEIFRSAGVREAFSNGIVWFTFGEGVKGHLPSLMLQL 1120 M A + D T E A +A K+GSAAAD + FVADLGEELPL+QP L+TLR I EKV+T K NPE L LHQRC +I ACFIVKCR G +ELDVAPLEDCV AVEK V R +R +SRVLKA DK +I++ KER+++LEG LSLAGIA L MGK Q + LA E +L PKPPAK+A+VPKGTP KSWHVERR VTE+VF AL DG P LVGLVG+SG+GKTTAA I S VRE FS+GIVW EGV +LP LMLQL Sbjct: 1 MAAYVADATGEVAKIASKMGSAAADVIQFVADLGEELPLLQPVLRTLRIIREKVETVKRNPEDLTVLHQRCTYITACFIVKCRHGYTELDVAPLEDCVNAVEKFVERYRKRGKISRVLKAVGDKGDIVQLKERLRDLEGDLSLAGIASLAKYLIADPKPCSPVAFAFQERMGKKQEGNHEELLAKTETILRQLPKPPAKVANVPKGTPTHKSWHVERRNVTETVFQALDADGGPHLVGLVGDSGAGKTTAASAIVSSIVVRETFSDGIVWLPVNEGVHDNLPCLMLQL 288
BLAST of mRNA_C-linearis_contig10.512.1 vs. uniprot
Match: D7FZY7_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY7_ECTSI) HSP 1 Score: 259 bits (661), Expect = 3.590e-72 Identity = 148/288 (51.39%), Postives = 187/288 (64.93%), Query Frame = 2 Query: 320 MPANLGDTTAEAAGLALKIGSAAADAMSFVADLGEELPL-------VQPALKTLRDIGEKVQTTKSNPEKLAALHQRCAHIAACFIVKCRQGS-SELDVAPLEDCVKAVEKLVSRCSRRSTLSRVLKASSDKDEILRPKERIKELEGGLSLAGIAILMGKW-------------QAAQQRDTLANQEAVLGHFPKPPAKLASVPKGTPPRKSWHVERRQVTESVFGALAGDGEPRLVGLVGNSGSGKTTAALEIFRSAGVREAFSNGIVWFTFGEGVKGHLPSLMLQL 1120 M A AE L LK+GSA D+++F+A+LGE+LP ++P LKTL I E V+ ++N E+L L++RC ++ AC +VK RQ S SE+D+ P+E+C++A +LV RC R ++RVL ASSDK+EI R K I++LE LSLAG+AIL GK QAA Q LAN E+++ K PAKLA +PK TP RKSWHVER V E VF AL G P LVGLVG+SGSGKTTAA EI RS VR+AFS+G+VW T G K LPSLMLQL Sbjct: 1 MAAKSSGAAAEVTKLGLKMGSATVDSITFMAELGEDLPFGEPVLPHLRPVLKTLTAIRETVENVQNNQEELQTLYRRCVYLTACVVVKSRQSSCSEMDLTPVEECLEAAGELVERCGGRGKMTRVLNASSDKEEIARMKANIRDLEADLSLAGVAILEGKTSDLTAMVERMGTNQAATQEMILANTESIIDRLSKTPAKLAKIPKATPIRKSWHVERLYVMERVFEALTAVGGPHLVGLVGDSGSGKTTAASEIVRSNEVRQAFSDGVVWLTVNHGAKDRLPSLMLQL 288
BLAST of mRNA_C-linearis_contig10.512.1 vs. uniprot
Match: D7FZW8_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW8_ECTSI) HSP 1 Score: 254 bits (650), Expect = 1.070e-70 Identity = 144/267 (53.93%), Postives = 174/267 (65.17%), Query Frame = 2 Query: 320 MPANLGDTTAEAAGLALKIGSAAADAMSFVADLGEELPLVQPALKTLRDIGEKVQTTKSNPEKLAALHQRCAHIAACFIVKCRQGSSELDVAPLEDCVKAVEKLVSRCSRRSTLSRVLKASSDKDEILRPKERIKELEGGLSLAGIAILMGKWQAAQQRDTLANQEAVLGHFPKPPAKLASVPKGTPPRKSWHVERRQVTESVFGALAGDGEPRLVGLVGNSGSGKTTAALEIFRSAGVREAFSNGIVWFTFGEGVKGHLPSLMLQL 1120 M A++ D+ AEAA LAL+IGS +DA+S DLGEELP+++P KTL+ I V+T K+N E+LAAL QRC +I ACF+VKCR SE+DVAPL+DCV+A + RCSRR +SRV+KA SDK EI + L L LAGIA+L GK + TL + L P+ KLA+VP G P RKSWHVERR +V AL G +V L G SGSGKTT A EI RS VREAFS+GIVW EG K LPSLMLQL Sbjct: 1 MVADISDSAAEAARLALEIGSTISDAVSCAVDLGEELPVIKPVFKTLKAIRTTVETVKNNREELAALEQRCTYITACFVVKCRLIESEVDVAPLKDCVEAAKNFAERCSRRGKVSRVIKAFSDKSEIAGLNSSVDRLTTDLGLAGIAVLEGK--VDDMKKTLDRIDQRLESLPRSFGKLAAVPMGAPVRKSWHVERRHAMATVLDALNGSDRACVVALAGYSGSGKTTVAAEIVRSTEVREAFSDGIVWLPVNEGAKKRLPSLMLQL 265
BLAST of mRNA_C-linearis_contig10.512.1 vs. uniprot
Match: D7G5K4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5K4_ECTSI) HSP 1 Score: 235 bits (600), Expect = 1.560e-69 Identity = 142/285 (49.82%), Postives = 174/285 (61.05%), Query Frame = 2 Query: 320 MPANLGDTTAEAAGLALKIGSAAADAMSFV-ADLGEELPLVQPALKTLRDIGEKVQTTKSNPEKLAALHQRCAHIAACFIVKCRQ---GSSELDVAPLEDCVKAVEKLVSRCSRRSTLSRVLKASSDKDEILRPKERIKELEGGLSLAGIAILMGKW--------------QAAQQRDTLANQEAVLGHFPKPPAKLASVPKGTPPRKSWHVERRQVTESVFGALAGDGEPRLVGLVGNSGSGKTTAALEIFRSAGVREAFSNGIVWFTFGEGVKGHLPSLMLQL 1120 M L D EAA LALK+GS A D +SFV G ELP+V LKTL + E V+T + N ++LAAL +RC ++ A IVK RQ S LDV PL+DCV EK RC +R ++KA S KDE+ RI L G L LAGIA ++G+ QAA Q++ LANQE V+ PKPP K A +P+GTP RKSWHVERR V ++V AL G+ P LVGLVG+SG+GKTTAA E+ S VRE+FS+GIVW G LPSLMLQL Sbjct: 1 MVTTLSDAAVEAANLALKMGSTAVDMISFVHRGDGGELPVVGTVLKTLTAMRETVETVQQNRDELAALEKRCTYMTASVIVKFRQIPQPGSGLDVTPLKDCVVVAEKFAERCKKRRMRWEIVKAFSVKDELATLNARIDRLVGDLGLAGIATVLGEVADLKGMMLEQMVSDQAAAQKELLANQEIVIDRLPKPPTKKADIPQGTPMRKSWHVERRHVMDTVVEALTGEAGPHLVGLVGDSGAGKTTAASELVGSNVVRESFSDGIVWLAVNYGANKRLPSLMLQL 285
BLAST of mRNA_C-linearis_contig10.512.1 vs. uniprot
Match: A0A6H5KLK9_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLK9_9PHAE) HSP 1 Score: 231 bits (589), Expect = 7.680e-63 Identity = 129/261 (49.43%), Postives = 163/261 (62.45%), Query Frame = 2 Query: 377 GSAAADAMSFVADLGEELPLVQPALKTLRDIGEKVQTTKSNPEKLAALHQRCAHIAACFIVKCRQGSSELDVAPLEDCVKAVEKLVSRCSRRSTLSRVLKASSDKDEILRPKERIKELEGGLSLAGIAILMGKW-------------QAAQQRDTLANQEAVLGHFPKPPAKLASVPKGTPPRKSWHVERRQVTESVFGALAGDGEPRLVGLVGNSGSGKTTAALEIFRSAGVREAFSNGIVWFTFGEGVKGHLPSLMLQL 1120 G+ A+D ++F+ + + LPL++P LKTL+ + AAL+QRC +I C IV+CR+GSS L PL +CV AV V RCSRR LSRVLKA+ DK+EI K+R+++LEG L LAGIA + GK QA TLAN + + P LA+VP GTP RKSWHVERR V +V AL G+G PRLVGLVG+SGSGKTTAA EI RS VREAFS+GIVW + +G L +LM+ L Sbjct: 6 GTMASDVLAFLTEASDGLPLIEPVLKTLKAVXXXXXXXXXXXXXXAALYQRCTYITGCVIVRCRKGSSGLKATPLMECVNAVGAFVERCSRRGMLSRVLKATDDKEEIAGLKQRLEDLEGDLRLAGIATVGGKVEDLKALLEHVDTKQALSHSQTLANHDIMFARVGISPETLATVPAGTPARKSWHVERRHVMRAVCDALPGEGGPRLVGLVGDSGSGKTTAAAEIVRSTEVREAFSDGIVWLSVNDGATERLRALMMHL 266
BLAST of mRNA_C-linearis_contig10.512.1 vs. uniprot
Match: A0A6H5KJ30_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ30_9PHAE) HSP 1 Score: 198 bits (504), Expect = 5.020e-51 Identity = 130/281 (46.26%), Postives = 156/281 (55.52%), Query Frame = 2 Query: 320 MPANLGDTTAEAAGLALKIGSAAADAMSFVADLGEELPLVQPALKTLRDIGEKVQTTKSNPEKLAALHQRCAHIAACFIVKCRQGS-SELDVAPLEDCVKAVEKLVSRCSRRSTLSRVLKASSDKDEILRPKERIKELEGGLSLAGIAILMGKW-------------QAAQQRDTLANQEAVLGHFPKPPAKLASVPKGTPPRKSWHVERRQVTESVFGALAGDGEPRLVGLVGNSGSGKTTAALEIFRSAGVREAFSNGIVWFTFGEGVKGHLPSLMLQL 1120 M A AE LALK+GSA D+++FVADL E+LP N E+L L++RC + C IVK RQ S SE+DV+P+E+C++A +LV RC R ++RVL ASSDKD+I R K I++LE LSLAG+AIL GK QAA Q LAN E + K PAK A +PK TP KSWHVER V E VF L DG P LVGLVG+SGSGKTTAA EI RS + LPSLMLQL Sbjct: 1 MAAESSGAAAEVTKLALKMGSATVDSITFVADLCEDLPF-------------------ENQEELQTLYRRCVFLTTCVIVKSRQSSFSEMDVSPVEECLEAAGELVERCGGRGKMTRVLNASSDKDQIARMKANIRDLEANLSLAGVAILEGKTSDLRATVERMAKIQAATQEVILANTEIITDRLSKTPAKPAKIPKSTPIWKSWHVERFDVVERVFEPLTADGGPPLVGLVGDSGSGKTTAASEIVRSN-------------------EDRLPSLMLQL 243
BLAST of mRNA_C-linearis_contig10.512.1 vs. uniprot
Match: D8LFN6_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFN6_ECTSI) HSP 1 Score: 182 bits (461), Expect = 2.200e-45 Identity = 121/279 (43.37%), Postives = 156/279 (55.91%), Query Frame = 2 Query: 350 EAAGLALKIGSAAADAMSFVADLGEELPLVQPALKTLRDIGEKVQTTKSNPEKLAALHQRCAHIAACFIVKCRQ-GSSELDVAPLEDCVKAVEKLVSRCSRRSTLSRVLKASSDKDEILRPKERIKELEGGLSLAGIAILMGKWQAAQQRDTLANQEAVLGHFPKPPA-KLASVPKGTPPRKSWHVERRQVTESVFGALAGDGEPRLVGLVGNSGSGKTTAALEIF-RSAG-----------------VREAFSNGIVWFTFGEGVKG--HLPSLMLQL 1120 EAA + LK+GS AAD + F +LG E+P+V LKTL+ I + + +SN E+L AL +RC ++ AC IVK RQ SSE++VAPLE CV A E ++RCSRR R KASSD DE+L R+ L G L LAGIA L K D A V+ P + +A+VP G P SWHV R +V ++V+ L+ P++VGLVG SGSGKTT A I S G VRE F +G+VW G G +P+LM QL Sbjct: 54 EAARVFLKMGSTAADIVMFTEELGGEVPVVGAVLKTLKAIRLRFEAVQSNTERLKALEERCTYVTACVIVKWRQTSSSEMNVAPLESCVNAAEDFIARCSRRGLCGRCTKASSDNDELLTLNSRVDSLTGDLGLAGIASLDAKVD-----DLKAMLAEVIAQNTMPASVPVAAVPNGKPVEHSWHVARDRVVDAVYEHLSCGQTPQVVGLVGRSGSGKTTCAASIVGESTGRRHQNETGDQMLRRLNRVREHFRDGVVWLRVGRGGGSAERVPALMSQL 327
BLAST of mRNA_C-linearis_contig10.512.1 vs. uniprot
Match: A0A6H5J759_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J759_9PHAE) HSP 1 Score: 164 bits (414), Expect = 4.450e-40 Identity = 100/218 (45.87%), Postives = 127/218 (58.26%), Query Frame = 2 Query: 473 EKVQTTKSNPEKLAALHQRCAHIAACFIVKCRQG--SSELDVAPLEDCVKAVEKLVSRCSRRSTLSRVLKASSDKDEILRPKERIKELEGGLSLAGIAILMGKWQAAQQRDTLANQEAVLGHFPKPPAKLASVPKGTPPRKSWHVERRQVTESVFGALAGDGEPRLVGLVGNSGSGKTTAALEIFRSAGVREAFSNGIVWFTFGEGVKGHLPSLMLQL 1120 E V+T ++LAAL +RC ++ AC I K R S +V+PLEDCV EK V R +R T+ ++++ QAA +++ LANQE ++ PKPP K A VP+GTP RKSWHVER VTE+V AL G+ PRLVGLVG+SG+GKTTAA E+ RS VRE+FS+GIVW T G LPSLMLQL Sbjct: 3 ETVETVYQTRDELAALEKRCTYMTACIIAKFRHAHPGSAPNVSPLEDCVMEAEKFVERRKKR-TMEQMVQN---------------------------------QAAARKELLANQEIIIDRLPKPPIKKAYVPQGTPTRKSWHVERH-VTETVVEALTGEAGPRLVGLVGDSGAGKTTAAAELVRSNVVRESFSDGIVWLTVNYGANKRLPSLMLQL 185
BLAST of mRNA_C-linearis_contig10.512.1 vs. uniprot
Match: A0A6H5KMQ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ3_9PHAE) HSP 1 Score: 148 bits (373), Expect = 1.660e-36 Identity = 81/134 (60.45%), Postives = 96/134 (71.64%), Query Frame = 2 Query: 365 ALKIGSAAADAMSFVADLGEELPLVQPALKTLRDIGEKVQTTKSNPEKLAALHQRCAHIAACFIVKCRQGSSELDVAPLEDCVKAVEKLVSRCSRRSTLSRVLKASSDKDEILRPKERIKELEGGLSLAGIAIL 766 A ++GSA DA+SFVA+LGE LPL QP LKTL I EKV+T SN E LAAL +RC +I AC IVK R+GSSELDVAPLEDC++A LV C RR L RVLKASSD+ EI RI+ LE + LAGI ++ Sbjct: 114 AREVGSAVVDAVSFVAELGEGLPLFQPVLKTLTAIREKVKTVISNREDLAALGERCVYITACVIVKFRKGSSELDVAPLEDCIRAAGVLVEHCGRRGKLLRVLKASSDRGEIAALNTRIRALESDMGLAGITVV 247
BLAST of mRNA_C-linearis_contig10.512.1 vs. uniprot
Match: A0A6H5KYW3_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYW3_9PHAE) HSP 1 Score: 126 bits (317), Expect = 6.910e-27 Identity = 70/121 (57.85%), Postives = 79/121 (65.29%), Query Frame = 2 Query: 767 MGKWQAAQQRDTLANQEAVLGHFP---KPPAKLASVPKGTPPRKSWHVERRQVTESVFGALAGDGEPRLVGLVGNSGSGKTTAALEIFRSAGVREAFSNGIVWFTFGEGVKGHLPSLMLQL 1120 M QAA Q L NQ +L H K AKL VPKGTP RKSW+V+RR V ++VF LA DG PRLVGLVG SGSGKTT A E RS V+EAFS+GI W + +G K L SLMLQL Sbjct: 1 MANKQAASQERILENQSKILDHMDQLSKTQAKLTKVPKGTPARKSWYVKRRHVMDTVFEGLASDGGPRLVGLVGGSGSGKTTVASESVRSTEVQEAFSDGIAWLSVNDGAKERLSSLMLQL 121 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.512.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.512.1 >prot_C-linearis_contig10.512.1 ID=prot_C-linearis_contig10.512.1|Name=mRNA_C-linearis_contig10.512.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=269bp MPANLGDTTAEAAGLALKIGSAAADAMSFVADLGEELPLVQPALKTLRDIback to top mRNA from alignment at C-linearis_contig10:1632585..1635100- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.512.1 ID=mRNA_C-linearis_contig10.512.1|Name=mRNA_C-linearis_contig10.512.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2516bp|location=Sequence derived from alignment at C-linearis_contig10:1632585..1635100- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:1632585..1635100- >mRNA_C-linearis_contig10.512.1 ID=mRNA_C-linearis_contig10.512.1|Name=mRNA_C-linearis_contig10.512.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1614bp|location=Sequence derived from alignment at C-linearis_contig10:1632585..1635100- (Chordaria linearis ClinC8C monoicous)back to top |