mRNA_C-linearis_contig10.504.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig10.504.1 vs. uniprot
Match: A0A6H5J759_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J759_9PHAE) HSP 1 Score: 183 bits (465), Expect = 1.330e-52 Identity = 92/122 (75.41%), Postives = 104/122 (85.25%), Query Frame = -3 Query: 2 KRFVERGHGGKGSKCLVVADNVWEEEVISKLLETGMSVLVSTRHEELVTGAGGEAVRVDELSEEDAELLLTKAAELPQAARLPDAAVDLVELCGRVAMDLAFVGRWSTVRGREDRDAWSEAA 367 K+ +E GHGGKG KCL VADNVWE+EV+S LL+TGM+VL+STRHEELVTGA G VR+DELS DAE +L AAELP A RLPD AVDL++LCGRVAMDLAFVGRWSTVRGR DR AWS+AA Sbjct: 213 KQRMENGHGGKGLKCLAVADNVWEKEVVSMLLKTGMTVLLSTRHEELVTGARGVPVRLDELSARDAESVLRSAAELPPAVRLPDDAVDLIDLCGRVAMDLAFVGRWSTVRGRHDRVAWSDAA 334
BLAST of mRNA_C-linearis_contig10.504.1 vs. uniprot
Match: D7FZY7_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY7_ECTSI) HSP 1 Score: 180 bits (456), Expect = 4.050e-50 Identity = 91/122 (74.59%), Postives = 103/122 (84.43%), Query Frame = -3 Query: 2 KRFVERGHGGKGSKCLVVADNVWEEEVISKLLETGMSVLVSTRHEELVTGAGGEAVRVDELSEEDAELLLTKAAELPQAARLPDAAVDLVELCGRVAMDLAFVGRWSTVRGREDRDAWSEAA 367 K ++RGHGGKG KCLVVADNVWE+EV+ KLLETGM VL+STR EELV G+ GE V VDE+SE +AE +L KA+ELP RLPD AVDL+ELCGRVAMDLAFVGRWSTVRGR DR AWS+AA Sbjct: 312 KEKMQRGHGGKGLKCLVVADNVWEKEVVWKLLETGMWVLLSTRDEELVVGSEGEVVGVDEMSEVEAESVLRKASELPPETRLPDDAVDLIELCGRVAMDLAFVGRWSTVRGRSDRTAWSDAA 433
BLAST of mRNA_C-linearis_contig10.504.1 vs. uniprot
Match: A0A6H5KRK8_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRK8_9PHAE) HSP 1 Score: 176 bits (447), Expect = 6.820e-49 Identity = 90/122 (73.77%), Postives = 102/122 (83.61%), Query Frame = -3 Query: 2 KRFVERGHGGKGSKCLVVADNVWEEEVISKLLETGMSVLVSTRHEELVTGAGGEAVRVDELSEEDAELLLTKAAELPQAARLPDAAVDLVELCGRVAMDLAFVGRWSTVRGREDRDAWSEAA 367 K+ VE GHGGKG KCLVVADNVWE +V+S+LLETGM +L+STR EELV A GE V VDELSE +AE +L +AAEL ARLPD A DL+ELCGRVAMDLAFVGRWSTVRGR+DR AWS+AA Sbjct: 315 KQQVENGHGGKGLKCLVVADNVWESDVVSQLLETGMWILLSTRDEELVKRANGEVVGVDELSEAEAESVLRRAAELSPEARLPDDAKDLIELCGRVAMDLAFVGRWSTVRGRQDRTAWSDAA 436
BLAST of mRNA_C-linearis_contig10.504.1 vs. uniprot
Match: A0A6H5KLK9_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLK9_9PHAE) HSP 1 Score: 167 bits (422), Expect = 1.360e-45 Identity = 89/123 (72.36%), Postives = 100/123 (81.30%), Query Frame = -3 Query: 2 KRFVERGHGGKGSKCLVVADNVWEEEVISKLLETGMSVLVSTRHEELVTGA-GGEAVRVDELSEEDAELLLTKAAELPQAARLPDAAVDLVELCGRVAMDLAFVGRWSTVRGREDRDAWSEAA 367 ++ ++ GHGGKG KCLVVADNVWEE VISKLLETGM VL+STR E LV A GG V VDELSEEDA +L +A+EL RLPD AV+LVELCGRVAMD+AFVGRWSTVRGR DR AWS+AA Sbjct: 293 RQRMQSGHGGKGLKCLVVADNVWEEAVISKLLETGMWVLLSTRDEALVRSAEGGVVVGVDELSEEDAMSVLRRASELSPELRLPDEAVELVELCGRVAMDVAFVGRWSTVRGRSDRTAWSDAA 415
BLAST of mRNA_C-linearis_contig10.504.1 vs. uniprot
Match: A0A6H5KJ30_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ30_9PHAE) HSP 1 Score: 164 bits (414), Expect = 1.850e-44 Identity = 86/122 (70.49%), Postives = 97/122 (79.51%), Query Frame = -3 Query: 2 KRFVERGHGGKGSKCLVVADNVWEEEVISKLLETGMSVLVSTRHEELVTGAGGEAVRVDELSEEDAELLLTKAAELPQAARLPDAAVDLVELCGRVAMDLAFVGRWSTVRGREDRDAWSEAA 367 K + RGHGG+G KCL V DNVWE+EV+ +LLE GM VL+STR EELVTG GE V V+ELSE +AE +L KAAELP RLPD AVDL+ELCGRVAMDLAF GR STVRGR DR AWS+AA Sbjct: 267 KERMHRGHGGEGLKCLGVVDNVWEKEVVCELLEAGMWVLLSTRDEELVTGWEGEVVEVNELSEVEAESVLRKAAELPPETRLPDDAVDLIELCGRVAMDLAFGGRLSTVRGRSDRTAWSKAA 388
BLAST of mRNA_C-linearis_contig10.504.1 vs. uniprot
Match: A0A6H5KYW3_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYW3_9PHAE) HSP 1 Score: 162 bits (411), Expect = 4.630e-44 Identity = 84/121 (69.42%), Postives = 100/121 (82.64%), Query Frame = -3 Query: 5 KRFVERGHGGKGSKCLVVADNVWEEEVISKLLETGMSVLVSTRHEELVTGAGGEAVRVDELSEEDAELLLTKAAELPQAARLPDAAVDLVELCGRVAMDLAFVGRWSTVRGREDRDAWSEA 367 ++ +++G GGK KCLVVADNVWE+EV+SKLLETGM VL+STR+ LVT A GE V VDELSE DA +L +AAELP ++P AVDL+ELCGRVAMDLAFVGRWSTVRGR+DR AWS+A Sbjct: 148 RQRMKKGTGGKKLKCLVVADNVWEKEVVSKLLETGMWVLLSTRNITLVTEAHGEVVGVDELSEADAMSVLRRAAELPPQGKIPGDAVDLIELCGRVAMDLAFVGRWSTVRGRQDRMAWSDA 268
BLAST of mRNA_C-linearis_contig10.504.1 vs. uniprot
Match: D7FZW8_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW8_ECTSI) HSP 1 Score: 162 bits (411), Expect = 4.880e-44 Identity = 82/122 (67.21%), Postives = 102/122 (83.61%), Query Frame = -3 Query: 2 KRFVERGHGGKGSKCLVVADNVWEEEVISKLLETGMSVLVSTRHEELVTGAGGEAVRVDELSEEDAELLLTKAAELPQAARLPDAAVDLVELCGRVAMDLAFVGRWSTVRGREDRDAWSEAA 367 K+ +E GH G+ KCLVVADNVWEE+V+SKL+ETGM VL+STR E +V + G+AV VDELS+ DAE +L +AAELP+ +RLPD AVDL++LCGRVAMD+AFVGRWSTVRGR D +WS+AA Sbjct: 292 KQRLEEGHKGRRLKCLVVADNVWEEDVVSKLVETGMWVLLSTRDEAVVKRSRGKAVVVDELSQADAESVLKRAAELPRESRLPDDAVDLIKLCGRVAMDVAFVGRWSTVRGRHDPASWSDAA 413
BLAST of mRNA_C-linearis_contig10.504.1 vs. uniprot
Match: D8LT49_ECTSI (NB-ARC and TPR repeat-containig protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT49_ECTSI) HSP 1 Score: 109 bits (272), Expect = 2.720e-25 Identity = 62/117 (52.99%), Postives = 85/117 (72.65%), Query Frame = -3 Query: 11 ERGHGGKGSKCLVVADNVWEEEVISKLLETGMSVLVSTRHEE-LVTGAGGEAV-RVDELSEEDAELLLTKAAELPQAARLPDAAVDLVELCGRVAMDLAFVGRWSTVRGREDRDAWS 355 ER GG G + LVVAD+VWE EV+++L TG S+L +TR EE L+ +GG +V RVDE++E +AE LL +AA L ++LPDAA D++ G VAMD+A+VGRW VRG+ D+ AW+ Sbjct: 402 ERSSGGFG-ELLVVADDVWEAEVLAELRNTGASILYTTRSEEDLLAASGGSSVLRVDEVTEGEAEELLRRAAALLDYSKLPDAAHDIIRRGGSVAMDVAYVGRWDIVRGKNDQAAWA 517
BLAST of mRNA_C-linearis_contig10.504.1 vs. uniprot
Match: D8LFN6_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFN6_ECTSI) HSP 1 Score: 108 bits (270), Expect = 4.960e-25 Identity = 59/124 (47.58%), Postives = 80/124 (64.52%), Query Frame = -3 Query: 5 FVERGHGGKGS-----KCLVVADNVWEEEVISKLLETGMSVLVSTRHEELVTGAGGEAVRVDELSEEDAELLLTKAAELPQAARLPDAAVDLVELCGRVAMDLAFVGRWSTVRGREDRDAWSEA 361 F+ GKGS +CLVVAD+VWE +++ +L TGM VL ++R +LV G V VD+LS+ +AE LL AAEL + LP AA ++E C R+A L FVGRWSTV+G +D + W+EA Sbjct: 354 FISDFVRGKGSAAGRKRCLVVADDVWEVDILEELRHTGMWVLFTSRDPDLVERVEGSVVPVDQLSKAEAECLLRGAAELSTGSSLPSAAAQVIERCDRMANRLEFVGRWSTVKGSDDEEDWAEA 477
BLAST of mRNA_C-linearis_contig10.504.1 vs. uniprot
Match: A0A6H5JI56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI56_9PHAE) HSP 1 Score: 108 bits (269), Expect = 6.920e-25 Identity = 58/117 (49.57%), Postives = 81/117 (69.23%), Query Frame = -3 Query: 11 ERGHGGKGSKCLVVADNVWEEEVISKLLETGMSVLVSTRHEE--LVTGAGGEAVRVDELSEEDAELLLTKAAELPQAARLPDAAVDLVELCGRVAMDLAFVGRWSTVRGREDRDAWS 355 ER GG G + LVVAD++WE EV+++L TG S+L +TR EE L G + +RVDE++E +AE +L +AA+L +LPDAA D++ G VAMD+A+VGRW VRG D+ AW+ Sbjct: 447 ERSSGGFG-ELLVVADDIWEAEVLAELRSTGASILYTTRSEEDLLAASGGSDVLRVDEVTEGEAEEILRRAADLLDHTKLPDAAHDIIRRGGPVAMDVAYVGRWDIVRGNNDQAAWA 562 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.504.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.504.1 >prot_C-linearis_contig10.504.1 ID=prot_C-linearis_contig10.504.1|Name=mRNA_C-linearis_contig10.504.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=123bp PPLRTKHHGLPCRERCSTGPQMPGPSPHGRTTRRGLRPRRASVPPGVAPPback to top mRNA from alignment at C-linearis_contig10:1537660..1538028+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.504.1 ID=mRNA_C-linearis_contig10.504.1|Name=mRNA_C-linearis_contig10.504.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=369bp|location=Sequence derived from alignment at C-linearis_contig10:1537660..1538028+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:1537660..1538028+ >mRNA_C-linearis_contig10.504.1 ID=mRNA_C-linearis_contig10.504.1|Name=mRNA_C-linearis_contig10.504.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=738bp|location=Sequence derived from alignment at C-linearis_contig10:1537660..1538028+ (Chordaria linearis ClinC8C monoicous)back to top |