mRNA_C-linearis_contig10.502.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig10.502.1 vs. uniprot
Match: D7FZW8_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW8_ECTSI) HSP 1 Score: 240 bits (612), Expect = 5.410e-67 Identity = 130/235 (55.32%), Postives = 160/235 (68.09%), Query Frame = -3 Query: 565 HSTFAREKLMDRGDVRKPALARWVKHISSLDSLRSFESYVLKGLWRAVERVGGDGWDEIRPYAKGLAEMDESDPLLRESLEAGAKFQEAQEDWEGASTTWRRRLEVEKTELGADHPIVLGTYANLVHCADRLDDVGAAAEWRKEESEVLPLALARMRLLANAGDLEQETASRGVFALTSKRSWKLGPDDRIAVEKLLRRCLAIFEAKLGSDHEEVAYTLRKLGRWVRDTWRLEEA 1269 H+ FARE L+DRG VR+PAL RW +++SSLD LRS + YVLKGLW A+ER+GGDGW + RPY K L M ESD LLR + EA FQEAQED EGAS +WRR LEVEK ELGADHP VL TY NL A+RL ++ AA+W ++E E LPLALARM L +G LE + + + + + P DR E LLRR L + EA LG +H +VA TLR+LG R+ RL+EA Sbjct: 524 HTDFARECLLDRGHVRRPALKRWTRYLSSLDILRSTDRYVLKGLWLAIERLGGDGWGKTRPYEKALGMMLESDALLRTTAEAVGWFQEAQEDLEGASASWRRLLEVEKRELGADHPFVLNTYGNLAIWAERLGNIEEAAKWHEKEVEGLPLALARMNALVRSG-LEADLDDADSLSSVAATALEFRPGDRALAETLLRRSLDVKEAILGPEHLQVADTLRQLGVSAREAGRLDEA 757
BLAST of mRNA_C-linearis_contig10.502.1 vs. uniprot
Match: A0A6H5KYW3_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYW3_9PHAE) HSP 1 Score: 218 bits (556), Expect = 1.570e-59 Identity = 124/236 (52.54%), Postives = 156/236 (66.10%), Query Frame = -3 Query: 568 HSTFAREKLMDRGDVRKPALARWVKHISSLDSLRSFESYVLKGLWRAVERVGGDGWDEIRPYAKGLAEMDE-SDPLLRESLEAGAKFQEAQEDWEGASTTWRRRLEVEKTELGADHPIVLGTYANLVHCADRLDDVGAAAEWRKEESEVLPLALARMRLLANAGDLEQETASRGVFALTSKR-SWKLGPDDRIAVEKLLRRCLAIFEAKLGSDHEEVAYTLRKLGRWVRDTWRLEE 1269 HS FARE LMD G VR+PA+ RWV IS L+ LRS + YVLKGLW AVE VGGDGW + R Y+ L MD L R+++ A A+ QEA EDWEGASTTWRR LE+EK +LGADH VL +Y +L CA++L VG AA+WR +E E LPLALAR++ ++G +E + G+ ++ S +K G DR E LLRR L I EA LG + VA TL +LG +R+ RLEE Sbjct: 380 HSIFARETLMDHGYVRRPAVKRWVSSISCLEVLRSSDPYVLKGLWLAVEGVGGDGWLKSRAYSAALVGMDRLHSALARQNIIALARLQEAHEDWEGASTTWRRLLEIEKKQLGADHYHVLKSYRSLASCAEQLGQVGEAADWRGKEVEALPLALARVQSQTDSGKVEGLDGANGLASVASTMLKFKPGSIDRAQAEVLLRRSLEIQEAALGHEDIAVADTLYQLGICLREAGRLEE 615
BLAST of mRNA_C-linearis_contig10.502.1 vs. uniprot
Match: A0A6H5KRK8_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRK8_9PHAE) HSP 1 Score: 211 bits (536), Expect = 1.640e-56 Identity = 117/234 (50.00%), Postives = 146/234 (62.39%), Query Frame = -3 Query: 571 HSTFAREKLMDRGDVRKPALARWVKHISSLDSLRSFESYVLKGLWRAVERVGGDGWDEIRPYAKGLAEMDESD-PLLRESLEAGAKFQEAQEDWEGASTTWRRRLEVEKTELGADHPIVLGTYANLVHCADRLDDVGAAAEWRKEESEVLPLALARMRLLANAGDLEQETASRGVFALTSKRSWKLGPDDRIAVEKLLRRCLAIFEAKLGSDHEEVAYTLRKLGRWVRDTWRLE 1269 HS FARE LMDRGDVR+PA+ R V+ ISSL++LRS Y LK LW V+RVGGDGW RPY K L +DES+ PL RE++EA A FQEAQEDW GA+ TWRR L VE+ +LGADHP VL TY L CA+ D+V A EW +++ + LPLA+AR + + G G A + L P +R E LLRR L I A+L D +VA LG +R+ RL+ Sbjct: 547 HSNFARESLMDRGDVRRPAIKRLVRSISSLEALRSINRYTLKHLWAGVQRVGGDGWATTRPYEKALEALDESNSPLFRETIEAVAWFQEAQEDWTGANRTWRRLLAVEEVQLGADHPYVLNTYHCLARCAEHQDNVEEAKEWHRKQHQALPLAMARAQS-KHVGSEAAGLDDAGSLASLAATVITLHPGERGEAEMLLRRSLEIKMAELDQDDVQVAVVQHDLGVCIREAGRLD 779
BLAST of mRNA_C-linearis_contig10.502.1 vs. uniprot
Match: A0A6H5KLK9_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLK9_9PHAE) HSP 1 Score: 209 bits (531), Expect = 3.020e-56 Identity = 117/236 (49.58%), Postives = 153/236 (64.83%), Query Frame = -3 Query: 565 HSTFAREKLMDRGDVRKPALARWVKHISSLDSLRSFES-YVLKGLWRAVERVGGDGWDEIRPYAKGLAEMDESDPLLRESLEAGAKFQEAQEDWEGASTTWRRRLEVEKTELGADHPIVLGTYANLVHCADRLDDVGAAAEWRKEESEVLPLALARMRLLANAGDLEQETASRGVFALTSKRSWKLGPDDRIAVEKLLRRCLAIFEAKLGSDHEEVAYTLRKLGRWVRDTWRLEEA 1269 HS FAR+ +MDRG VRKPA+ RW +SSLD LRSF+ +VLKGLW AV R+GG+ W +RPYA L+EMDES+PLL +SL++ FQ+AQ DW+ AS T RR L V++ +LGADHP + T LV+CA+RL + EW+ E VLPLA+ RM+L +AG+++ + + ++ S L PDDR E L+R L I E KLG D VAY L LG V RL+EA Sbjct: 523 HSGFARDCVMDRGYVRKPAVKRWTLRLSSLDVLRSFDDPFVLKGLWLAVGRLGGESWRNVRPYAAALSEMDESNPLLLKSLQSLGWFQDAQGDWQSASDTCRRILAVKRRQLGADHPHTILTLRALVYCAERLGNAEEMTEWQAELRRVLPLAVVRMQLRLDAGEVDGVDDANALNSIASTML-NLAPDDRGNAEALMRHSLEIQEVKLGRDDVYVAYNLHHLGVSVHLAGRLDEA 757
BLAST of mRNA_C-linearis_contig10.502.1 vs. uniprot
Match: D7FZY7_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY7_ECTSI) HSP 1 Score: 134 bits (338), Expect = 2.170e-30 Identity = 66/112 (58.93%), Postives = 82/112 (73.21%), Query Frame = -3 Query: 934 HSTFAREKLMDRGDVRKPALARWVKHISSLDSLRSFESYVLKGLWRAVERVGGDGWDEIRPYAKGLAEMDESDPLLRESLEAGAKFQEAQEDWEGASTTWRRRLEVEKTELG 1269 HS FAREKLMDRGDVR+PAL RW ++ISSLD+LRS + ++ LW VE+VGGDGW RPY LA M++SDPLL S+ A AKFQ +EDWE A T RR L++ T++G Sbjct: 553 HSDFAREKLMDRGDVRRPALVRWTRNISSLDTLRSVRWHDVRDLWLGVEQVGGDGWKSTRPYEAALAGMEDSDPLLPTSVVAVAKFQRHEEDWEEAIATCRRLLDMPVTKVG 664
BLAST of mRNA_C-linearis_contig10.502.1 vs. uniprot
Match: A0A6H5J759_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J759_9PHAE) HSP 1 Score: 126 bits (316), Expect = 7.860e-28 Identity = 63/105 (60.00%), Postives = 75/105 (71.43%), Query Frame = -3 Query: 952 STFAREKLMDRGDVRKPALARWVKHISSLDSLRSFESYVLKGLWRAVERVGGDGWDEIRPYAKGLAEMDESDPLLRESLEAGAKFQEAQEDWEGASTTWRRRLEV 1266 S FAR LMDRGDVR+ AL RWV +ISSLD++RS+ + LK W VE+VGG+GWDE P LAEMD+ +PLL+ES+ A AK EA EDWE AST W R L V Sbjct: 444 SEFARASLMDRGDVRRHALRRWVGYISSLDTVRSYNADYLKHQWLDVEKVGGEGWDETHPCETALAEMDDPEPLLQESIAAVAKAHEAHEDWEKASTIWHRSLGV 548
BLAST of mRNA_C-linearis_contig10.502.1 vs. uniprot
Match: A0A6H5KJ30_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ30_9PHAE) HSP 1 Score: 118 bits (295), Expect = 7.420e-25 Identity = 91/259 (35.14%), Postives = 120/259 (46.33%), Query Frame = -3 Query: 550 HSTFAREKLMDRGDVRKPALARWVKHISSLDSLRSFESYVLKGLWRAVERVGGDGWDEIRPYAKGLAEMDESDP-------------------LLRESLEAGAKFQEAQEDWEGASTTWRRRLEVEKTELGADHPIVLGTYANLVHCADRLDDVGAAAEWRKEESEVLPLALARMRLLANAGDLEQETASRGVFALTSKRSWKLGPDDRIAVEKLLRRCLAIFEAKLGSDHEEVAYTLRKLGRWVRDTWRLEEAEELLR 1269 HS FAREKLMDRGDV +PAL RW ++ISS+D+LR+ + ++ LW E+VGGDGW RPY LA +++SDP ++R E G ++ A E A R L + T LG H V T +L C V AA ++ + A + R KLGP + E+LL R L I EA DHE VA L LGR +R R+++AE LLR Sbjct: 508 HSDFAREKLMDRGDVCRPALVRWTRNISSVDTLRAVRWHEVRDLWLGAEQVGGDGWKITRPYEAALAGLEDSDPHRPTLLDMPVTKVRPYSLSVIRSLHELGLGYKHAG-CLEEAEEVLRGCLVIGGTLLGFTHVTVAKTL-DLSGC------VRAAGQFAQ--------------------------AXXXXXRCLATREAKLGPRGLVETEELLARRLEIVEASTALDHEHVADVLFDLGRCMRQAGRMDKAEGLLR 732
BLAST of mRNA_C-linearis_contig10.502.1 vs. uniprot
Match: A0A6H5JSI2_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI2_9PHAE) HSP 1 Score: 93.6 bits (231), Expect = 1.230e-16 Identity = 54/139 (38.85%), Postives = 72/139 (51.80%), Query Frame = -3 Query: 886 HSTFAREKLMDRGDVRKPALARWVKHISSLDSLRSFESYVLKGLWRAVERVGGDGWDEIRPYAKGLAEMDESDP-----------LLRESLEAGAKFQEAQEDWEGASTTWRRRLEVEKTELGADHPIVLGTYANLVHC 1269 H+ FAR+KLMDR D+R+PA+ RW +HIS LD E +VL +WRA+E VGG GW +RPY L +M S+P ++ K E E + +RR LE+E+ LG D V T L C Sbjct: 509 HADFARKKLMDRNDLREPAVERWTEHISRLDFAVGVEIFVLLPMWRALEEVGGKGWWALRPYDDQLIQMVTSNPATSYATSGAVGVVMNLYRGARKLGELAEIMKRVEPLFRRALEIEEATLGPDDIQVAVTLQELGLC 647
BLAST of mRNA_C-linearis_contig10.502.1 vs. uniprot
Match: A0A6H5KE50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE50_9PHAE) HSP 1 Score: 92.0 bits (227), Expect = 3.460e-16 Identity = 59/158 (37.34%), Postives = 79/158 (50.00%), Query Frame = -3 Query: 811 HSTFAREKLMDRGDVRKPALARWVKHISSLDSLRSFESYVLKGLWRAVERVGGDGWDEIRPYAKGLAEMDESDPLLRESLEAGAKFQEAQEDWEGASTTWRRRLEVEKTELGAD---HPIVLGTYANLVHCADRLDDVGAAAEWRKE--ESEVLPLAL 1269 H FAR+K+ D+GDVRKP + RW IS LD + Y L +WRAVE VGGDGW ++RPY K L M SD +L+ A+ E ++ T R LE + GAD + L + RL + G A+ E ++ V P AL Sbjct: 616 HMDFARDKIRDQGDVRKPVVRRWTSRISRLDFAVGRDVYALSDIWRAVEWVGGDGWFDLRPYDKELVSMG-SDCSKSHALDVVAELYEQEQKLAEMETLTREVLEHADDDAGADSCVRMVALWYLGRSLSIQGRLQEQGEASRQLGELFDASVKPSAL 772 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.502.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.502.1 >prot_C-linearis_contig10.502.1 ID=prot_C-linearis_contig10.502.1|Name=mRNA_C-linearis_contig10.502.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=230bp MYHGPIYQACAAYRPPPRDLSQAWLRKSPNSASAASPRQSYRRVLTSNFVback to top mRNA from alignment at C-linearis_contig10:1523258..1524528+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.502.1 ID=mRNA_C-linearis_contig10.502.1|Name=mRNA_C-linearis_contig10.502.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1271bp|location=Sequence derived from alignment at C-linearis_contig10:1523258..1524528+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:1523258..1524528+ >mRNA_C-linearis_contig10.502.1 ID=mRNA_C-linearis_contig10.502.1|Name=mRNA_C-linearis_contig10.502.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1380bp|location=Sequence derived from alignment at C-linearis_contig10:1523258..1524528+ (Chordaria linearis ClinC8C monoicous)back to top |