mRNA_C-linearis_contig10.500.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig10.500.1 vs. uniprot
Match: A0A6H5KYW3_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYW3_9PHAE) HSP 1 Score: 227 bits (578), Expect = 7.680e-65 Identity = 120/202 (59.41%), Postives = 149/202 (73.76%), Query Frame = 1 Query: 1 RKAILRAGFEDLAVGSEDKRVPRLYLALSVIPDGHEPTVKDAAVLPFDRELSIEDEASVGKVVDILESWTILRPKKGTCQMLDAHSILAREKLLDHGYVRKPAMERLVKHISSLDSLRFHESHVLKGLWRVVERVGGDDWGWDKRRRYSKEFAKVDKSDPS-CMESLQAVADFQEVQEDWKGASTTGQRRLEVEKTELGADH 603 RKAILRAGFEDLA+GS+D+RV RLYL+L+V PDGH TV+DAAVL +DRE EDEASV VVD LE WT+LR ++G +M DAHSI ARE L+DHGYVR+PA++R V IS L+ LR + +VLKGLW VE VGGD GW K R YS +D+ + +++ A+A QE EDW+GASTT +R LE+EK +LGADH Sbjct: 296 RKAILRAGFEDLAIGSDDERVQRLYLSLAVFPDGHAFTVRDAAVLLYDREPCAEDEASVAVVVDTLERWTVLRSEQGAYRMHDAHSIFARETLMDHGYVRRPAVKRWVSSISCLEVLRSSDPYVLKGLWLAVEGVGGD--GWLKSRAYSAALVGMDRLHSALARQNIIALARLQEAHEDWEGASTTWRRLLEIEKKQLGADH 495
BLAST of mRNA_C-linearis_contig10.500.1 vs. uniprot
Match: D7FZW8_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW8_ECTSI) HSP 1 Score: 226 bits (575), Expect = 3.750e-64 Identity = 117/204 (57.35%), Postives = 151/204 (74.02%), Query Frame = 1 Query: 1 RKAILRAGFEDLAVGSEDKRVPRLYLALSVIPDGHEPTVKDAAVLPFDRELSIEDEASVGKVVDILESWTILRPKKGTCQMLDAHSILAREKLLDHGYVRKPAMERLVKHISSLDSLRFHESHVLKGLWRVVERVGGDDWGWDKRRRYSKEFAKVDKSDPSCMESLQAVADFQEVQEDWKGASTTGQRRLEVEKTELGADHPMV 612 RKAIL+ GFEDLA+GS+D+RV RLYL+L+V+PDGH ++KDAAVL +DR S EDEAS G VVD+LE W+I+R +GT +M DAH+ ARE LLD G+VR+PA++R +++SSLD LR + +VLKGLW +ER+GGD WG K R Y K + +SD + +AV FQE QED +GAS + +R LEVEK ELGADHP V Sbjct: 440 RKAILQGGFEDLAIGSDDERVQRLYLSLAVMPDGHAFSLKDAAVLLYDRSPSTEDEASAGGVVDVLERWSIIRSAQGTYRMHDAHTDFARECLLDRGHVRRPALKRWTRYLSSLDILRSTDRYVLKGLWLAIERLGGDGWG--KTRPYEKALGMMLESDALLRTTAEAVGWFQEAQEDLEGASASWRRLLEVEKRELGADHPFV 641
BLAST of mRNA_C-linearis_contig10.500.1 vs. uniprot
Match: A0A6H5KRK8_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRK8_9PHAE) HSP 1 Score: 224 bits (571), Expect = 1.650e-63 Identity = 120/205 (58.54%), Postives = 152/205 (74.15%), Query Frame = 1 Query: 1 RKAILRAGFEDLAVGSEDKRVPRLYLALSVIPDGHEPTVKDAAVLPFDRELSIEDEASVGKVVDILESWTILRPKKGTCQMLDAHSILAREKLLDHGYVRKPAMERLVKHISSLDSLRFHESHVLKGLWRVVERVGGDDWGWDKRRRYSKEFAKVDKSD-PSCMESLQAVADFQEVQEDWKGASTTGQRRLEVEKTELGADHPMV 612 R+AIL+AGFEDLA+GS+D+RV RLYL+L+V+PDGH TVKDAAVL +DRE EDEASVG VV+ LE WTI+R + T +M DAHS ARE L+D G VR+PA++RLV+ ISSL++LR + LK LW V+RVGGD GW R Y K +D+S+ P E+++AVA FQE QEDW GA+ T +R L VE+ +LGADHP V Sbjct: 463 RRAILQAGFEDLAIGSDDERVQRLYLSLAVLPDGHAFTVKDAAVLLYDREPGTEDEASVGGVVEALERWTIIRSVEATYRMHDAHSNFARESLMDRGDVRRPAIKRLVRSISSLEALRSINRYTLKHLWAGVQRVGGD--GWATTRPYEKALEALDESNSPLFRETIEAVAWFQEAQEDWTGANRTWRRLLAVEEVQLGADHPYV 665
BLAST of mRNA_C-linearis_contig10.500.1 vs. uniprot
Match: A0A6H5KLK9_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLK9_9PHAE) HSP 1 Score: 197 bits (502), Expect = 2.170e-54 Identity = 102/203 (50.25%), Postives = 143/203 (70.44%), Query Frame = 1 Query: 1 RKAILRAGFEDLAVGSEDKRVPRLYLALSVIPDGHEPTVKDAAVLPFDRELSIEDEASVGKVVDILESWTILRPKKGTCQMLDAHSILAREKLLDHGYVRKPAMERLVKHISSLDSLR-FHESHVLKGLWRVVERVGGDDWGWDKRRRYSKEFAKVDKSDPSCMESLQAVADFQEVQEDWKGASTTGQRRLEVEKTELGADHP 606 RKA+L+AGFEDLA+GS+D+R+PRLYL+L+V+PDGH T KDA L +DR EDE S +++ LE W+ LR + G +M DAHS AR+ ++D GYVRKPA++R +SSLD LR F + VLKGLW V R+GG+ W R Y+ +++D+S+P ++SLQ++ FQ+ Q DW+ AS T +R L V++ +LGADHP Sbjct: 439 RKAVLQAGFEDLAIGSDDERIPRLYLSLAVLPDGHAFTAKDATALLYDRAPCPEDEVSTEELIRTLERWSALRTEGGAYRMHDAHSGFARDCVMDRGYVRKPAVKRWTLRLSSLDVLRSFDDPFVLKGLWLAVGRLGGESWR--NVRPYAAALSEMDESNPLLLKSLQSLGWFQDAQGDWQSASDTCRRILAVKRRQLGADHP 639
BLAST of mRNA_C-linearis_contig10.500.1 vs. uniprot
Match: D7FZY7_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY7_ECTSI) HSP 1 Score: 187 bits (475), Expect = 1.840e-50 Identity = 106/207 (51.21%), Postives = 139/207 (67.15%), Query Frame = 1 Query: 1 RKAILRAGFEDLAVGSEDKRVPRLYLALSVIPDGHEPTVKDAAVLPFDRELSIEDEASVGKVVDILESWTILRPKKGTCQML---------DAHSILAREKLLDHGYVRKPAMERLVKHISSLDSLRFHESHVLKGLWRVVERVGGDDWGWDKRRRYSKEFAKVDKSDPSCMESLQAVADFQEVQEDWKGASTTGQRRLEVEKTELG 594 RKA+L+AGFEDLA GS+D+RV RLYL+L+V+PDG TVKDAAVL +DR+ S EDEAS VV+ILE W++LR +G +M DAHS AREKL+D G VR+PA+ R ++ISSLD+LR H ++ LW VE+VGGD GW R Y A ++ SDP S+ AVA FQ +EDW+ A T +R L++ T++G Sbjct: 460 RKAVLQAGFEDLASGSDDERVQRLYLSLAVLPDGRGFTVKDAAVLLYDRKPSAEDEASAAGVVEILERWSVLRSIRGCYRMAWRGGHYVLHDAHSDFAREKLMDRGDVRRPALVRWTRNISSLDTLRSVRWHDVRDLWLGVEQVGGD--GWKSTRPYEAALAGMEDSDPLLPTSVVAVAKFQRHEEDWEEAIATCRRLLDMPVTKVG 664
BLAST of mRNA_C-linearis_contig10.500.1 vs. uniprot
Match: A0A6H5J759_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J759_9PHAE) HSP 1 Score: 161 bits (408), Expect = 3.110e-42 Identity = 91/193 (47.15%), Postives = 123/193 (63.73%), Query Frame = 1 Query: 1 RKAILRAGFEDLAVGSEDKRVPRLYLALSVIPDGHEPTVKDAAVLPFDRELSIEDEASVGKVVDILESWTILRPKKG-TCQMLDAHSILAREKLLDHGYVRKPAMERLVKHISSLDSLRFHESHVLKGLWRVVERVGGDDWGWDKRRRYSKEFAKVDKSDPSCMESLQAVADFQEVQEDWKGASTTGQRRLEV 576 RKAIL+AG EDLA+GS+D+RV RLYL+L+V+PD V DAA+L +DR+ + EDE SV +V+D+LE W++LR M D S AR L+D G VR+ A+ R V +ISSLD++R + + LK W VE+VGG+ GWD+ A++D +P ES+ AVA E EDW+ AST R L V Sbjct: 358 RKAILQAGLEDLAIGSDDERVQRLYLSLAVLPDDQGIQVHDAALLLYDRDPTAEDEESVARVLDVLERWSVLRSTWAYKYYMHDVQSEFARASLMDRGDVRRHALRRWVGYISSLDTVRSYNADYLKHQWLDVEKVGGE--GWDETHPCETALAEMDDPEPLLQESIAAVAKAHEAHEDWEKASTIWHRSLGV 548
BLAST of mRNA_C-linearis_contig10.500.1 vs. uniprot
Match: A0A6H5KQ93_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ93_9PHAE) HSP 1 Score: 143 bits (360), Expect = 5.020e-39 Identity = 72/118 (61.02%), Postives = 93/118 (78.81%), Query Frame = 1 Query: 1 RKAILRAGFEDLAVGSEDKRVPRLYLALSVIPDGHEPTVKDAAVLPFDRELSIEDEASVGKVVDILESWTILRPKKGTCQMLDAHSILAREKLLDHGYVRKPAMERLVKHISSLDSLR 354 RKAIL+ GFED A+ S+D+RV R YL+L+V+PDGH ++KDAAVL DR S EDEAS G VVD+LE W+I+RP +GT +M DAH+ ARE LLD G+VR+PA++R ++ISSLD LR Sbjct: 52 RKAILQGGFEDRAIESDDERVQRFYLSLAVMPDGHAFSLKDAAVLLDDRPPSTEDEASAGGVVDVLERWSIIRPAQGTYRMHDAHTYFARECLLDRGHVRRPALKRWTRYISSLDVLR 169
BLAST of mRNA_C-linearis_contig10.500.1 vs. uniprot
Match: A0A6H5KJ30_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ30_9PHAE) HSP 1 Score: 151 bits (382), Expect = 5.340e-38 Identity = 85/169 (50.30%), Postives = 111/169 (65.68%), Query Frame = 1 Query: 1 RKAILRAGFEDLAVGSEDKRVPRLYLALSVIPDGHEPTVKDAAVLPFDRELSIEDEASVGKVVDILESWTILRPKKGTCQML---------DAHSILAREKLLDHGYVRKPAMERLVKHISSLDSLRFHESHVLKGLWRVVERVGGDDWGWDKRRRYSKEFAKVDKSDP 480 RKA+++AGF DLA+GS+D+RV RLYL+L+V+PDG TVKDAAVL +DR S EDEAS VV+ILE W+ L +G +M DAHS AREKL+D G V +PA+ R ++ISS+D+LR H ++ LW E+VGGD GW R Y A ++ SDP Sbjct: 415 RKAVVQAGFGDLAIGSDDERVQRLYLSLAVLPDGRRFTVKDAAVLIYDRMPSAEDEASAAGVVEILERWSALCSIRGCYRMAWRGSHYVLHDAHSDFAREKLMDRGDVCRPALVRWTRNISSVDTLRAVRWHEVRDLWLGAEQVGGD--GWKITRPYEAALAGLEDSDP 581
BLAST of mRNA_C-linearis_contig10.500.1 vs. uniprot
Match: A0A6H5L0N2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0N2_9PHAE) HSP 1 Score: 113 bits (283), Expect = 8.760e-25 Identity = 90/226 (39.82%), Postives = 113/226 (50.00%), Query Frame = 1 Query: 1 RKAILRAGFEDLA--VGSEDKRVPRLYLALSVIPDGHEPTVKDAAVLPF-DRELSIEDE--ASVG----------------KVVDILESWTILRPKKG------------TCQMLDAHSILAREKLLDHGYVRKPAMERLVKHISSLDSLRFHESHVLKGLWRVVERVGGDDWGWDKRRRYSKEFAKVDKSDPSCMESLQAVADFQEVQEDWKGASTTGQRRLEVE 579 RKAILRAGF DL G +D R+ LYL+L+V+PDGHE TVKDAAVL D D A+ G +V+ +LE+ IL G + +M +AHS ARE LLD + A+ R V +SSLD++ F + L LW VE VGG GW R Y +D DP C L AVA F+ + DW GAS +R L VE Sbjct: 686 RKAILRAGFRDLVSVAGDDDSRL--LYLSLAVLPDGHEFTVKDAAVLLHGDGSARCGDGIVAAAGGRGXXXXXXXXXXXXRRVLRVLEARGILTASGGRGGRRRSASSPSSFRMHEAHSAFAREILLDCPKILGWAVGRWVGFLSSLDAVLFFDPFALARLWSAVEDVGGK--GWRDGRPYETALEAIDNYDPLCRVCLVAVAKFRGAEGDWDGASLMWRRLLTVE 907
BLAST of mRNA_C-linearis_contig10.500.1 vs. uniprot
Match: D8LJY3_ECTSI (Tetratricopeptide TPR_2 repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJY3_ECTSI) HSP 1 Score: 112 bits (280), Expect = 1.780e-24 Identity = 88/228 (38.60%), Postives = 111/228 (48.68%), Query Frame = 1 Query: 1 RKAILRAGFEDLA--VGSEDKRVPRLYLALSVIPDGHEPTVKDAAVLPF-DRELSIEDEASVG--------------------KVVDILESWTILRPKKG------------TCQMLDAHSILAREKLLDHGYVRKPAMERLVKHISSLDSLRFHESHVLKGLWRVVERVGGDDWGWDKRRRYSKEFAKVDKSDPSCMESLQAVADFQEVQEDWKGASTTGQRRLEVE 579 RKAILRAGF DL G +D R+ LYL+L+V+PDGHE TVKDAAVL D D + +V+ +LE+ IL G + +M +AHS ARE LLD + A+ R V +SSLD++ F + L LW VE VGG GW R Y +D DP C L AVA F+ + DW GAS +R L VE Sbjct: 102 RKAILRAGFRDLVGVAGDDDSRL--LYLSLAVLPDGHEFTVKDAAVLLHGDGSARCGDGMAAASAXXXXXXXXXXXXXXXXXRRVLRVLEARGILTASGGRGGRRKSTSSPSSFRMHEAHSGFAREILLDCPKILGWAVGRWVGFLSSLDAVLFFDPSALARLWSAVEDVGGK--GWRDGRPYETALEAIDNYDPLCRVCLVAVAKFRSAEGDWDGASLMWRRLLTVE 325 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.500.1 >prot_C-linearis_contig10.500.1 ID=prot_C-linearis_contig10.500.1|Name=mRNA_C-linearis_contig10.500.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=125bp MLDAHSILAREKLLDHGYVRKPAMERLVKHISSLDSLRFHESHVLKGLWRback to top mRNA from alignment at C-linearis_contig10:1505408..1506190+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.500.1 ID=mRNA_C-linearis_contig10.500.1|Name=mRNA_C-linearis_contig10.500.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=783bp|location=Sequence derived from alignment at C-linearis_contig10:1505408..1506190+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:1505408..1506190+ >mRNA_C-linearis_contig10.500.1 ID=mRNA_C-linearis_contig10.500.1|Name=mRNA_C-linearis_contig10.500.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at C-linearis_contig10:1505408..1506190+ (Chordaria linearis ClinC8C monoicous)back to top |