mRNA_C-linearis_contig10.496.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_C-linearis_contig10.496.1 vs. uniprot
Match: A0A6H5KL36_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL36_9PHAE) HSP 1 Score: 222 bits (565), Expect = 4.650e-57 Identity = 211/465 (45.38%), Postives = 230/465 (49.46%), Query Frame = 2 Query: 809 APALSTRPSSDSMVGIADSPHMLPEGLKTDEEYYGGRRGCGSXXXXXXXXXXXXXXXXXXXXSGGQTELAGTVAGDGEAEADRPPSTCDSSVGGDNTTQVGSFHLPETGSSARGPAGIHPGAEEGAGVGMGNRXXXXXXXXXXXXXXXXXLEAESEAG-VTVVTAAETPAA---ATPALAASAGWGSXXXXXXXXXXXXXXXXXXXXXXCLLDAFREPEGNDWGELEDWQGLPGLQLAGXXXXXXATSPRLQVPALIFRSGTVDEGDVLSLHGQPRSRKPEAISPAKYGGSE---RPHPHPTRRPXXXXXXXXXXXXXXXXXXXXXESERA-RVGPRMMGRPRPIRTTAAXXXXXXXXXXFLGFDGYDDGESGTSPGEDVGGWIGRTGXXXXXXXXXXXXXXXXXXGQPLLLSLADLTTAGLQKLLKAEGGSKMFFDPDSQRWVGEEVDLSGFEDPKSSSMGSAS 2179
AP+L TR SS S VGIADSP MLPEGLKTDEE GR XXXXXXXX G T +G V PP C +VGG T G AG + G+G AE+E G V VV AAE P A A AA G G LLD +REPEGNDWGELEDW GLPGLQLA P L+VP+LIFR GTVDEGDVLSLHG+PRSR PEA SPAKYG +E R P + ER V PRM + IR T DG +G GGW+ R+G XXXXXXXXXX QPLL+SLADLTTAGLQKLL+AEGGSKMFFDPDSQRWVGEEVDLSGFEDP +SSMGS S
Sbjct: 41 APSLVTRRSSGSTVGIADSPQMLPEGLKTDEEERSGRPAATXXXXXXXXXPKGEGV--------GPTGASGPV----------PPDQC-RAVGGAATGAAG--------------AGREALGDNDTPGGLG---------------------AEAEGGLVPVVAAAEPPVPPKFAGRAEAAEQGAGDGRIGGS-----------------LLDTYREPEGNDWGELEDWHGLPGLQLANAGDKV----PTLKVPSLIFRPGTVDEGDVLSLHGRPRSRNPEASSPAKYGSAEERARLRPSTAADRCTAASPEQAQAEWRDMDDADGDGERGLEVEPRM-NQQGVIRATTGGDVADL------------DGPAGGD-----GGWMRRSGSXXXXXXXXXX--------QPLLVSLADLTTAGLQKLLQAEGGSKMFFDPDSQRWVGEEVDLSGFEDPNTSSMGSTS 404
BLAST of mRNA_C-linearis_contig10.496.1 vs. uniprot
Match: D7FZY2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY2_ECTSI) HSP 1 Score: 211 bits (536), Expect = 2.410e-53 Identity = 249/697 (35.72%), Postives = 277/697 (39.74%), Query Frame = 2 Query: 176 LFVQVIDASGHLTAKGKHHRRSHSAPMGPPAMSSSPIPLSQQSSASGRLSPPRRRYIGSGLSFHQTVVQGPPSGHRRTASLTTELLLLPDGAGGRRCGSGGGRVSVLSGRPAESELRELQATEALHRPPLRRRSEQPPNARSQ---------------------TPPSLGVRRGPGVSTGGCTPPQHRSLSRSPQRSLRRTSKTQEAPGETTTTTAHCPQKGQPASSPAPALAPALSTRPSSDSMVGIADSPHMLPEGLKTDEEYYGGRRGCGSXXXXXXXXXXXXXXXXXXXXSGGQTELAGTVAGDGEAEADRPPSTCDSSVGGDNTTQVGSFHLPETGSSARGPAGI-HPGAEEGAGVGMGNRXXXXXXXXXXXXXXXXXLEAESEAG-VTVVTAAETPAA---ATPALAASAGWGSXXXXXXXXXXXXXXXXXXXXXXCLLDAFREPEGNDWGELEDWQGLPGLQLAGXXXXXXATSPRLQVPALIFRSGTVDEGDVLSLHGQPRSRKPEAISPAKYG-GSERPH--PHPTRRPXXXXXXXXXXXXXXXXXXXXXESERARVGPRMMGRPRPIRTTAAXXXXXXXXXXFLGFDGYDDGESGTSPGEDVGGWIGRTGXXXXXXXXXXXXXXXXXXGQPLLLSLADLTTAGLQKLLKAEGGSKMFFDPDSQRWVGEEVDLSGFEDPKSSSMGSAS 2179
+++ IDA G LT KGK HRRS SAP+GPP+ SG S Q LQ EAL RPPLR R+E NAR TPP LG G G GG T RS RSPQ L +R S D+ MLPEGLKTDEE + GRR T +A G+G A P+ V D + VG E G+ +PG E A++E G VTVV E PAA A A AA G G LLDA+REPEGNDWGELEDW GLPGLQLA P L+VP+LIFR GTVDEGDVLSLHG+PRSRKPEA SPAKYG G ER P + ER V M + IR T DG +G S GGW+ XXXXXXXXXXXXX QPLLLSLADLTTAGLQKLL+AEGGSKMFFDPDSQRWVGEEVDLSGFEDP +SS+GS S
Sbjct: 7 VWINTIDAKGRLTMKGKAHRRSQSAPLGPPSXXXXXXXXXXXXXXXXXXXX-XXXXXXSGFSCPQIXXXXXXXXXXXXXXXXXXXXXXX--------------XXXXXXXXXXXXXAGLQDEEALPRPPLRLRAEPRYNARRTVDSRESDSSSSPCSHRGGRPLTPPGLGSGAGDG-GVGG-TGVNFRSPPRSPQTRLH--------------------------------------SRGSRDAK--------MLPEGLKTDEEDHSGRRAA--------------------------TAVAAAPKGEGVA-----PTGASGPVPPDQSRAVGGAATGEAGAGREAVGDYDNPGGSE----------------------------AKAEGGLVTVVAGEEVPAAPKFAGRAEAAEQGAGDGRIGGS-----------------LLDAYREPEGNDWGELEDWHGLPGLQLANAGDEV----PTLKVPSLIFRPGTVDEGDVLSLHGRPRSRKPEASSPAKYGSGEERARLCPSAPADTCTAASPGQTQAERRDMDDEDGDGERGLVVEPRMNQHGVIRATTGGRVADL------------DGPAGGS-----GGWM--------RXXXXXXXXXXXXXXQPLLLSLADLTTAGLQKLLQAEGGSKMFFDPDSQRWVGEEVDLSGFEDPNTSSIGSTS 535
BLAST of mRNA_C-linearis_contig10.496.1 vs. uniprot
Match: A0A836CHZ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHZ5_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 1.300e-5 Identity = 29/50 (58.00%), Postives = 41/50 (82.00%), Query Frame = 2 Query: 2006 QPLLLSLADLTTAGLQKLLKAEGGSKMFFDPDSQRWVG---EEVDLSGFE 2146
+P+L+SLAD+T AGL+KLL+A G ++M+FD +QRWVG + VD+SGFE
Sbjct: 408 EPILVSLADVTAAGLEKLLEAGGDTQMYFDSVAQRWVGGAADRVDMSGFE 457 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.496.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.496.1 >prot_C-linearis_contig10.496.1 ID=prot_C-linearis_contig10.496.1|Name=mRNA_C-linearis_contig10.496.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=672bp MDDALFVQVIDASGHLTAKGKHHRRSHSAPMGPPAMSSSPIPLSQQSSASback to top mRNA from alignment at C-linearis_contig10:1457162..1465761- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.496.1 ID=mRNA_C-linearis_contig10.496.1|Name=mRNA_C-linearis_contig10.496.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=8600bp|location=Sequence derived from alignment at C-linearis_contig10:1457162..1465761- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:1457162..1465761- >mRNA_C-linearis_contig10.496.1 ID=mRNA_C-linearis_contig10.496.1|Name=mRNA_C-linearis_contig10.496.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=4032bp|location=Sequence derived from alignment at C-linearis_contig10:1457162..1465761- (Chordaria linearis ClinC8C monoicous)back to top |