mRNA_C-linearis_contig10.495.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig10.495.1 vs. uniprot
Match: D7FZY2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY2_ECTSI) HSP 1 Score: 496 bits (1278), Expect = 6.810e-150 Identity = 359/651 (55.15%), Postives = 408/651 (62.67%), Query Frame = 1 Query: 127 NAHRRWSSGEGIY--SSRRPSTVLGGSRMASGPXXXXXXXXXXXRLGHSRRHSVSGPTRGVPTGGSGGGVRLEGSGDGGVCRPSSARKXXXXXXXXXXXXXHIKPGSMASSVTSSAGLRSESDTGSVVRLWEDGDRRQVQDGGWGGAGGLSRRVEEALLRASESPGASAADLAAXXXXXXXXXXSGSGRKGLVVGGDQLTKTRLAQVFEGAAYASSDGRLSRASLASSSRQNASPPLGGGSL-------DHRAWVPVRTESSPPLGLE--HSLASGSELGASETSDWDQDIDFECLPDNQPFNLTLEQPTKFGYSPGLALDSGEVEGDGGPANPRAS-VSHPQSDSDWPPPAERPELFRHQTAPATTATAAALGHGEAG-AFMGWPLKTS---ADEREGXXXXXXXAYMPGHQKGG-YKDSRADSLGSAAEWDRTLEGEIDVSLAQRPRTPVAPGQPFGKARFSA--TKGAAPRPTSRLDRKSSPNLMVGKLAAEASGXXXXXXXXXXXXXXXXXXXXPPRSAVGIAWDAFKRNGGGDSLTATVKAAVTTATTIAVEHVRKRTRERLLLEKGAGGVGKRLSGPVQITLEDLQASPSPDRMSLGAAVEEAGGQPAKSP-APAAGGARFNRGKMCWEGFEEPDLTGFATTDSE 2019
NAHRRWSSGEG+Y SSRRPS VL G + H RRHSVS P+R P+ + GG+RLEGSGDGGV RP+S+ +P SM SS G+ SESDTGSVVRL + V+DGG G G +RR + A AS++ S XXXXXXXXXX RK LVVGGD RLAQVFEGAAYASS+GR AS++SSSR+NASPPLG + AW R +SPPLG SLASGSE+ ASETSDWDQD DFE LP++Q FNLTLE+PTKFGYSPGLA+ AS ++ P D DW PPA P+L R QTAPA T +++LGH EAG AF WP K A + +G A GHQ+ G Y D RADSLGSAAEWDRTLEGE+D+SLAQR +TPV G K +A G PRP +R KS P + K AEASG PRSAVGIAW+AFK NGGGDSL AT+ AA+T AT+IAVEHVRKRTRERLLLEKGAG GKRLSGPVQITLEDLQ SPSPDRMSLGA E+AG + SP + AA GARFNR KMCWEGFEEPDLTGF TTDSE
Sbjct: 590 NAHRRWSSGEGLYGPSSRRPSIVLEERGETVGGGGSGSDGVQRRKELHQRRHSVSVPSRIPPS--ASGGLRLEGSGDGGVLRPTSSASENRRAKGRV----RSRPASMVSS-----GISSESDTGSVVRLSDAAAPGHVRDGG--GWGNTARRFDSAFGFASDT---SXXXXXXXXXXXXXXXXXXLRRKDLVVGGDHQ---RLAQVFEGAAYASSEGR---ASMSSSSRRNASPPLGXXXXXXXXXXXEMLAWATPRAGASPPLGGVGGSSLASGSEIEASETSDWDQDADFEGLPEDQAFNLTLEEPTKFGYSPGLAVAGXXXXXXXXXXXXXASNIASPIPDGDWLPPAA-PDLLRRQTAPAMTPPSSSLGHVEAGGAFTRWPPKAPPAHASDGDGAEESGDGAKNRGHQRSGTYTDLRADSLGSAAEWDRTLEGELDLSLAQRNQTPVMVGPSLKKFPVAAGNVSGTVPRPKARRGGKSLPGRVPSK-PAEASGCRGGGGAAGAIKIKS------PRSAVGIAWEAFKANGGGDSLPATLSAAMT-ATSIAVEHVRKRTRERLLLEKGAGA-GKRLSGPVQITLEDLQTSPSPDRMSLGAGGEDAGSAKSISPGSTAAAGARFNRRKMCWEGFEEPDLTGFDTTDSE 1208
BLAST of mRNA_C-linearis_contig10.495.1 vs. uniprot
Match: A0A6H5KL36_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL36_9PHAE) HSP 1 Score: 460 bits (1184), Expect = 2.320e-137 Identity = 338/656 (51.52%), Postives = 390/656 (59.45%), Query Frame = 1 Query: 127 NAHRRWSSGEGIY--SSRRPSTVLGGSRMASGPXXXXXXXXXXXRLGHSRRHSVSGPTRGVPTGGSGGGVRLEGSGDGGVCRPSSARKXXXXXXXXXXXXXHIKPGSMASSVTSSAGLRSESDTGSVVRLWEDGDRRQVQDGG-WGGAGGLSRRVEEALLRASESPGASAADLAAXXXXXXXXXXSGSGRKGLVVGGDQLTKTRLAQVFEGAAYASSDGRLSRASLASSSRQNASPPLGG-------GSLDHRAWVPVRTESSPPLGLE--HSLASGSELGASETSDWDQDIDFECLPDNQPFNLTLEQPTKFGYSPGLALDSGEVEGDGGPANPRAS-VSHPQSDSDWPPPAERPELFRHQTAPATTATAAALGH-GEAGAFMGWPLKTS---ADEREGXXXXXXXAYMPGHQKGG-YKDSRADSLGSAAEWDRTLEGEIDVSLAQRPRTPVAPGQPFGKARFSA--TKGAAPRPTSRLDRKSSPNLMVGKLAAEASGXXXXXXXXXXXXXXXXXXXXPPRSAVGIAWDAFKRNGGGDSLTATVKAAVTTATTIAVEHVRKRTRERLLLEKGAGGVGKRLSGPVQITLEDLQASPSPDRMSLGAAVEEAGGQPAKSP-APAAGGARFNRGKMCWE----GFEEPDLTGFATTDSE 2019
NAHRRWSSGEG+Y SSRRPS VL G A G + H RRHSVS P+R +P SGG +RLEGSGDG V R +S+ +PGSM SS G+ SESDTGSVVRL + ++DGG WG +RR + A AS++ XXX RK LV GG+ RLAQVFEGAAYASS+G +S ++SSSR+NASPPLG GSL+ W R +SPPLG SLASGSE+ ASETSDWDQD DFE LP++Q F LTLE+PTKFGYSPG+A+ G ++ P D +W PPA P L R QTAPA T +++LGH GAF WP K + A + A GHQ+ G Y D RADSLGSAAEWD TLEGE+D+SLAQR +TPV G K SA G PRP +R D KS P + K AEAS P SAV IAW+AFK NGGGDSL AT+ AA+T AT+IAV+HV KRTRERLLLEKGAG GKRLSGPVQITLEDLQ SPSPDR+SLG E+AG + SP A AA GARFNR KMCWE GFEEPDLTGF TTDSE
Sbjct: 458 NAHRRWSSGEGLYRPSSRRPSIVLEGRGEAVGGGGSGSDGVQRRKELHQRRHSVSVPSR-IPLSASGG-LRLEGSGDGEVLRSTSSASENRRANGRG----RSRPGSMVSS-----GISSESDTGSVVRLSDAAAPGHLRDGGRWGST---ARRFDSAFGVASDTSXXXXXXXXXXXXPPLR-------RKDLVFGGNHQ---RLAQVFEGAAYASSEGHIS---MSSSSRRNASPPLGNSSPPPGVGSLEMLTWATPRPGASPPLGGVGGSSLASGSEIEASETSDWDQDADFEGLPEDQAFKLTLEEPTKFGYSPGVAVAGGSXXXXXXXXXXXXXXIASPIPDGNWLPPAA-PALLRRQTAPARTPPSSSLGHMNVGGAFTSWPPKATPAHASDEAVAEESGVGAKNRGHQRSGTYTDLRADSLGSAAEWDWTLEGELDLSLAQRSQTPVMVGPSLKKFTVSAGNVSGTVPRPQARRDGKSLPGRVPSK-PAEASDCRGGGAAAGATKIKS------PHSAVRIAWEAFKANGGGDSLPATLSAAMT-ATSIAVKHVSKRTRERLLLEKGAGA-GKRLSGPVQITLEDLQTSPSPDRVSLGEGGEDAGCAKSISPGATAAAGARFNRQKMCWEASTTGFEEPDLTGFDTTDSE 1076 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.495.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.495.1 >prot_C-linearis_contig10.495.1 ID=prot_C-linearis_contig10.495.1|Name=mRNA_C-linearis_contig10.495.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=807bp GASSASPRRSNSKSPARISFSRSPRFGHGSGAAAAAAAAAPANAHRRWSSback to top mRNA from alignment at C-linearis_contig10:1452221..1457113- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.495.1 ID=mRNA_C-linearis_contig10.495.1|Name=mRNA_C-linearis_contig10.495.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4893bp|location=Sequence derived from alignment at C-linearis_contig10:1452221..1457113- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:1452221..1457113- >mRNA_C-linearis_contig10.495.1 ID=mRNA_C-linearis_contig10.495.1|Name=mRNA_C-linearis_contig10.495.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=4842bp|location=Sequence derived from alignment at C-linearis_contig10:1452221..1457113- (Chordaria linearis ClinC8C monoicous)back to top |