mRNA_C-linearis_contig10.492.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig10.492.1 vs. uniprot
Match: A0A6H5JCU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCU6_9PHAE) HSP 1 Score: 446 bits (1147), Expect = 1.850e-151 Identity = 234/391 (59.85%), Postives = 255/391 (65.22%), Query Frame = 3 Query: 3 IEWEDSDE-DEPPVKRPRRVKQRKDWSTSAWWIQLQDGDLLDHTTDAAKVFRTRFRVPHPFFLELVKLAKGKKWFSEGGKDAVGRSGIPTELK--------------------------------------------------------------------------------------------------------------VLTALQILGRGNCFDDILQLSLMSKSMAAATFHK*CKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHEVNAVGRPSRKRE 842 EWEDS E D PPVKR R+VK+R+DWSTSAWW+QLQ+ DLLDHTT+AAKVFRTRFRVPH FFLELVK+A+GKKWFS KDAVGR GIP ELK +LTALQILGRGNCFDDI QLSLMSK MAAATFHK CKHFAQE+FEEHIYLPTG+YQ +VM MYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGR IA+T+GFTG+TNDKTIIRYDAGV+ IKT+ QY TYKLR+ADGTFRERKGCY IVDNGYHEVN++G P+R RE Sbjct: 48 FEWEDSGEQDGPPVKRSRQVKERRDWSTSAWWLQLQNADLLDHTTEAAKVFRTRFRVPHAFFLELVKMARGKKWFSVREKDAVGRRGIPIELKLSSYRSGLLLLVVNCSDVPSIEPMRWIVVHNFTRWYRRVHSSTAVVAEHGSMGNVPCTVTRTSHRWHRKYCCRRPTAREKRRTLWFRLHTFQTRGHLRGHATTFDAASTKILTALQILGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRAIAITSGFTGATNDKTIIRYDAGVHTIKTDAQYTKRTYKLRRADGTFRERKGCYYIVDNGYHEVNSLGHPNRMRE 438
BLAST of mRNA_C-linearis_contig10.492.1 vs. uniprot
Match: A0A6H5KSI7_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI7_9PHAE) HSP 1 Score: 382 bits (981), Expect = 1.560e-127 Identity = 188/283 (66.43%), Postives = 220/283 (77.74%), Query Frame = 3 Query: 12 EDSDEDE----PPVKRPRRVKQRKDWSTSAWWIQLQDGDLLDHTTDAAKVFRTRFRVPHPFFLELVKLAKGKKWFSEGGKDAVGRSGIPTELKVLTALQILGRGNCFDDILQLSLMSKSMAAATFHK*CKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHEVNAVGRPSRKREAI 848 EDS+++E P VKR RRV QR+DW TSAWW +LQD DL DHTT AAKVFR RFRVP+PFF ELVKL++ K+WFS G KDA R GIP ELKVL G+GNCFDD+ QLS MS+S+A A FHK C+H A EMF+EHIYLPTGTY +VM ++ +LG TGA GSTDVTHIG MCPFTLGRS+TGKEGFPTIAY+VTVDHAGR +A+T GF G TNDKT IRYD+GVN I+TE QY + YKLRK +GT R R+GC+LIVDNGY+E N SR E++ Sbjct: 46 EDSEDEEEVVGPKVKRTRRVTQRRDWRTSAWWEKLQDVDLADHTTAAAKVFRERFRVPYPFFQELVKLSRAKRWFSPGEKDAANREGIPLELKVL------GKGNCFDDVEQLSKMSESIAQALFHKFCRHSAAEMFDEHIYLPTGTYLDEVMGIFHQLGCTGACGSTDVTHIGRNMCPFTLGRSFTGKEGFPTIAYEVTVDHAGRALAVTNGFAGGTNDKTTIRYDSGVNKIRTESQYTEREYKLRKVNGTERTRRGCFLIVDNGYYESNEDTAFSRHLESV 322
BLAST of mRNA_C-linearis_contig10.492.1 vs. uniprot
Match: A0A6H5KH50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH50_9PHAE) HSP 1 Score: 322 bits (824), Expect = 3.790e-105 Identity = 161/235 (68.51%), Postives = 176/235 (74.89%), Query Frame = 3 Query: 276 KVLTALQILGRGNCFDDILQLSLMSKSMAAATFHK*CKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKG----------------------------------------------CYLIVDNGYHEVNAVGRPSRKRE 842 +VLTALQILGRGNCFDDI QLSLMSK MAAATFHK CKHFAQE+FEEHIYLPTG+YQ +VM MYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGR IA+T+GFTG+TNDKTI+RYDAGV+ IKT+ QY TYKLR+ADGT+RERKG CYLIVDNGYHEVN++G P+R RE Sbjct: 3 QVLTALQILGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRAIAITSGFTGATNDKTIMRYDAGVHTIKTDAQYTKRTYKLRRADGTYRERKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCYLIVDNGYHEVNSLGHPNRMRE 237
BLAST of mRNA_C-linearis_contig10.492.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE) HSP 1 Score: 317 bits (813), Expect = 1.210e-100 Identity = 156/280 (55.71%), Postives = 199/280 (71.07%), Query Frame = 3 Query: 12 EDSDEDEPPVKRPRRVKQRKDWSTSAWWIQLQD------GDLLDHTTDAAKVFRTRFRVPHPFFLELVKLAKGKKWFSEGGKDAVGRSGIPTELKVLTALQILGRGNCFDDILQLSLMSKSMAAATFHK*CKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHEVNAVGRPSR 833 E+ +ED +KR RRV RKD++ S W IQLQ+ ++D T+ A+ FR FR+P+PFF+ELV L K + WF G +DA GR GIP +LKVL LQIL RGNCF DI +S +S AAATFH+ ++FA+EM+ EHI+LPTG YQ VM YD+LG +GA GSTDVTHI WGMCP+ RSYTGKEG+PT+AYQVTVDH RV+A+T GFTGSTNDK+IIRYD V I+ + Y + + + +ADGT + KGCYL+VDNGYH+ + PS+ Sbjct: 65 EEEEEDNREIKR-RRVYPRKDYNISGWAIQLQELKDLEVDGIVDPTSRPARRFRESFRLPYPFFVELVALVKQRDWFPTGKQDASGRRGIPVQLKVLACLQILARGNCFADIYHMSFISMQTAAATFHRFTRYFAREMYAEHIFLPTGDYQKKVMTQYDRLGFSGATGSTDVTHIPWGMCPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSK 343
BLAST of mRNA_C-linearis_contig10.492.1 vs. uniprot
Match: A0A6H5K6N4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6N4_9PHAE) HSP 1 Score: 299 bits (766), Expect = 1.040e-97 Identity = 146/189 (77.25%), Postives = 157/189 (83.07%), Query Frame = 3 Query: 276 KVLTALQILGRGNCFDDILQLSLMSKSMAAATFHK*CKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHEVNAVGRPSRKRE 842 +VLT LQ LGRGNCFDDI QLSLMSK MAAATFHK CKHFAQE+FEEHIYLPTG+YQ +VM MYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGR IA+T+G V+ IKT+ QY TYKLR ADGTFRERKGCYLIVDNGYHEVN++G P+R RE Sbjct: 3 QVLTTLQTLGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRAIAITSG----------------VHTIKTDAQYTKRTYKLRGADGTFRERKGCYLIVDNGYHEVNSLGHPNRMRE 175
BLAST of mRNA_C-linearis_contig10.492.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE) HSP 1 Score: 308 bits (790), Expect = 5.230e-97 Identity = 149/276 (53.99%), Postives = 190/276 (68.84%), Query Frame = 3 Query: 15 DSDEDEPPVKRPRRVKQRKDWSTSAWW---IQLQDGDLLDHTTDAAKVFRTRFRVPHPFFLELVKLAKGKKWFSEGGKDAVGRSGIPTELKVLTALQILGRGNCFDDILQLSLMSKSMAAATFHK*CKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHEVNAVGRPSR 833 + DE VKR RRV RKD++ S WW ++L++ DHTT A+ FR FRVP+PFF+ LV+L + + WF G D GR +P ELKVL LQIL RGN F DI +S +S A+TFH+ CK+FA E+++E++YLPTG VM YD++G GA+GSTDVTHI WGMCP+ R YTGKEG PT+A+QVTVDH+GRV+A+T GFTG+TNDKTIIRYD V I+T+ Y + YKL DG E KGCYL+VDNGYH+ + PS+ Sbjct: 85 EDDEASREVKR-RRVYVRKDYTKSGWWQELMELRETGETDHTTREARRFRNNFRVPYPFFVHLVELVRDRDWFPTGESDVTGRQAVPVELKVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSK 359
BLAST of mRNA_C-linearis_contig10.492.1 vs. uniprot
Match: A0A6H5KEB6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEB6_9PHAE) HSP 1 Score: 310 bits (793), Expect = 7.790e-96 Identity = 178/368 (48.37%), Postives = 214/368 (58.15%), Query Frame = 3 Query: 12 EDSDEDE----PPVKRPRRVKQRKDWSTSAWWIQLQDGDLLDHTTDAAKVFRTRFRVPHPFFLELVKLAKGKKWFSEGGKDAVGRSGIPTELKVLTAL-----QILGRGN----------CFDDILQL---------------------------SLMSKSMAAATF---------------------------------HK*CKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGY---------HEVNAVGR-PSRKREAI 848 EDS+++E P KR RRV QR+DW TSAWW QLQ DL DHTT AA VFR RFRVP+PFF LVKL++ K+WFS G KD R GIP ELK+ T+ Q+ G N FD+ + L + + +M T HK C+HFA EMF+EHIYL TGTY +VM ++ +LG TGA GST+VTHIGW MCPFTLGRS+TGKEGFPTIA +VTVDHAGR +A+T GFTG+TNDKTIIRYD+GVN I+TE QY + YKLRKA+GT R R+GC+LIVDNG H N V + PS +R I Sbjct: 46 EDSEDEEEVVGPKAKRTRRVTQRRDWRTSAWWEQLQHVDLADHTTAAATVFRGRFRVPYPFFQNLVKLSRAKRWFSPGEKDTANREGIPLELKLRTSTPVEDEQVDGTSNHKFCRHFAAEMFDEHIYLLTGTYLDEVMGIFHQLGCTGACGSTNVTHIGWNMCPFTLGRSFTGKEGFPTIACEVTVDHAGRALAVTNGFTHKFCRHFAAEMFDEHIYLLTGTYLDEVMGIFHQLGCTGACGSTNVTHIGWNMCPFTLGRSFTGKEGFPTIACEVTVDHAGRALAVTNGFTGATNDKTIIRYDSGVNKIRTESQYTEREYKLRKANGTERTRRGCFLIVDNGMSVPKDLCVVHHKNIVAKLPSSERVLI 413
BLAST of mRNA_C-linearis_contig10.492.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE) HSP 1 Score: 286 bits (733), Expect = 5.260e-89 Identity = 146/258 (56.59%), Postives = 176/258 (68.22%), Query Frame = 3 Query: 66 RKDWSTSAWWIQLQDGDLLDHTTDAAKVFRTRFRVPHPFFLELVKLAKGKKWFSEGGKDAVGRSGIPTELKVLTALQILGRGNCFDDILQLSLMSKSMAAATFHK*CKHFAQEMFEEHIYLPTGTY-QAD-VMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHEVNAVGRPSR 833 + D ST AW L+D DL D T+ AAK FR FRVP+PFFL LV+L K K WF+ +DA GR P E KVL L ILGRGN F I LS MS FH+ C+HFA EM++EHI+LP+ + D VM Y+KLG GA+GSTDVTHIGW CP+ GRSYTGKEG PT+ YQVTV+HAGRV+A+T GFTGSTNDKTII D V+ I+T+ QY + + + K DGT KGCYLIVDNGYH+ + PS+ Sbjct: 57 KNDTSTCAWAQVLEDEDLKDPTSIAAKKFREDFRVPYPFFLRLVELVKKKDWFATTQRDAYGRRCHPVEHKVLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSK 314
BLAST of mRNA_C-linearis_contig10.492.1 vs. uniprot
Match: D7FPI7_ECTSI (Transposon protein, putative, Pong sub-class n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI7_ECTSI) HSP 1 Score: 281 bits (720), Expect = 1.100e-87 Identity = 145/263 (55.13%), Postives = 174/263 (66.16%), Query Frame = 3 Query: 33 PPVKRPR---RVKQRKDWSTSAWWIQLQDGDLLDHTTDAAKVFRTRFRVPHPFFLELVKLAKGKKWFSEGGKDAVGRSGIPTELKVLTALQILGRGNCFDDILQLSLMSKSMAAATFHK*CKHFAQEMFEEHIYLPTGTY-QAD-VMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHE 806 P + RPR +QRK AW L+D DL + + +K FR FRVP FFL LV L K K WF+ G DA GR P E KVL L ILGRGNCF I Q+S MS + A FH CKHFA+EM++EHIYLP+ + D VM YD+LG +GA+GS DVTHI W CP+ L RSYTGKEG PTI YQVTV+HAGR A+T GFTGSTNDKTI+ +DA V I+T+ QY + T+ + DGT KGCYL+VDNGYH+ Sbjct: 41 PDLTRPRLSRTQRQRKYVERCAWARMLEDKDLEESNSRTSKQFRLDFRVPCAFFLRLVALVKSKNWFATAGCDAAGRQSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHMFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIVWNKCPYNLPRSYTGKEGVPTIGYQVTVNHAGRASAVTEGFTGSTNDKTIVCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHK 303
BLAST of mRNA_C-linearis_contig10.492.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE) HSP 1 Score: 281 bits (718), Expect = 1.350e-87 Identity = 140/260 (53.85%), Postives = 173/260 (66.54%), Query Frame = 3 Query: 60 KQRKDWSTSAWWIQLQDGDLLDHTTDAAKVFRTRFRVPHPFFLELVKLAKGKKWFSEGGKDAVGRSGIPTELKVLTALQILGRGNCFDDILQLSLMSKSMAAATFHK*CKHFAQEMFEEHIYLPTGTY-QAD-VMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHEVNAVGRPSR 833 ++RK+ AW L+D DL D + ++K FR FRVP FFL LV L K K WF+ G DA R P E KVL L ILGRGNCF I Q+S MS FHK CKHFA+EM++EHIYLP+ + D VM YD+LG +GA+GS DVTHIGW CP+ L RSYTGKEG PT+ YQVTV+HAGR IA+T GFT STNDKT + +DA V I+T+ QY + T+ + DGT KGCYL+VDNGYH+ + P++ Sbjct: 26 RKRKEVEKCAWAQMLEDKDLEDSNSISSKQFRLDFRVPDSFFLRLVALVKSKDWFTTSGCDAARRQSHPVEHKVLAWLTILGRGNCFASIYQVSWMSAKTVQTMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRAIAVTEGFTDSTNDKTTVCWDAVVEKIRTDNQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWKILMEPTK 285 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.492.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.492.1 >prot_C-linearis_contig10.492.1 ID=prot_C-linearis_contig10.492.1|Name=mRNA_C-linearis_contig10.492.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=155bp MFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSback to top mRNA from alignment at C-linearis_contig10:1364937..1367095+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.492.1 ID=mRNA_C-linearis_contig10.492.1|Name=mRNA_C-linearis_contig10.492.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2159bp|location=Sequence derived from alignment at C-linearis_contig10:1364937..1367095+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:1364937..1367095+ >mRNA_C-linearis_contig10.492.1 ID=mRNA_C-linearis_contig10.492.1|Name=mRNA_C-linearis_contig10.492.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=930bp|location=Sequence derived from alignment at C-linearis_contig10:1364937..1367095+ (Chordaria linearis ClinC8C monoicous)back to top |