mRNA_C-linearis_contig10.489.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig10.489.1 vs. uniprot
Match: D7FZY6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZY6_ECTSI) HSP 1 Score: 341 bits (874), Expect = 1.820e-116 Identity = 157/183 (85.79%), Postives = 164/183 (89.62%), Query Frame = 3 Query: 153 MPNIAAFDGKLVEYVEVHDEPIHRRQFSNDNVYIYIAGFRPGETSLWHRHSENTLYMCVGHAAAALNRPTDKEPFVHHASPGDLWWAMSKSAPYVHQVCSLPENTHTSHFFAMEILRPPPVLASRLLEHRCYNLRREDSRPGLARVYDFKLEPGESTGIHKWEFCGVVLCLSDGGGCLEGDRG 701
MP IA FDG+ VEYVEVHDEPIHRRQFSND VYIYIAGFRPGETSLWHRHSENTLY+CVGH AAALNRPTDKEPFVHHASPGDLWWAMSKSAPYVHQVC LPENTH SHFFAMEILRPPP +SR L+HRCY+LR EDSRPGLARVYDF+L+PGESTG H F GVVLCLSDGGG LE D G
Sbjct: 1 MPKIAVFDGREVEYVEVHDEPIHRRQFSNDYVYIYIAGFRPGETSLWHRHSENTLYVCVGHGAAALNRPTDKEPFVHHASPGDLWWAMSKSAPYVHQVCLLPENTHNSHFFAMEILRPPPTCSSRALDHRCYSLRGEDSRPGLARVYDFRLKPGESTGPHTLGFSGVVLCLSDGGGSLEADGG 183
BLAST of mRNA_C-linearis_contig10.489.1 vs. uniprot
Match: A0A836CD60_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD60_9STRA) HSP 1 Score: 168 bits (425), Expect = 1.920e-48 Identity = 84/187 (44.92%), Postives = 113/187 (60.43%), Query Frame = 3 Query: 153 MPNIAAFDGKLVEYVEVHDEPIHRRQFSNDNVYIYIAGFRPGETSLWHRHSENTLYMCVGHAAAALNRPTDKEPFVHHASPGDLWWAMSKSAPYVHQ------VCSLPENTHTSHFFAMEILRPPPVLASRLLEHRCYNLRREDSRPGLARVYDFKLEPGESTGIHKWEFCGVVLCLSDGGGCLEGD 695
M + DG+ ++YV VH+EP+H+ QF N+ V+ Y G PG+ WHRHSE++ Y+ + A LNRP D+ +VH D WW+M+K++P +HQ VC L E + FFA+EIL+ PPV + L Y + E S+ ARVY LEPG+STG+HKW F GVVL LSDG EGD
Sbjct: 1 MTRMVTHDGEEIDYVSVHEEPMHKHQFDNEYVWCYRVGLEPGKMCKWHRHSEDSFYVALTDGKA-LNRPCDRPEYVHPIKQFDQWWSMAKTSPIIHQARYLPQVCLLAECPIAADFFALEILKSPPVTSDAPLNCPGYTVESEYSKD-KARVYQLSLEPGQSTGMHKWNFYGVVLSLSDGELSSEGD 185
BLAST of mRNA_C-linearis_contig10.489.1 vs. uniprot
Match: A0A836C8W9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8W9_9STRA) HSP 1 Score: 167 bits (423), Expect = 3.120e-48 Identity = 81/180 (45.00%), Postives = 110/180 (61.11%), Query Frame = 3 Query: 153 MPNIAAFDGKLVEYVEVHDEPIHRRQFSNDNVYIYIAGFRPGETSLWHRHSENTLYMCVGHAAAALNRPTDKEPFVHHASPGDLWWAMSKSAPYVHQVCSLPENTHTSHFFAMEILRPPPVLASRLLEHRCYNLRREDSRPGLARVYDFKLEPGESTGIHKWEFCGVVLCLSDGGGCLEG 692
MP I+ +G+ VEYVEV+DEPIH+ QFSN+ Y YIA PGE+ +WHRHS+++ Y+ + + A+NRPTDK + GD WW++ K+ VHQVC + FF +E+L+ PPV + L Y L + AR+YD L+PG+STG+H W F VLCLSDG EG
Sbjct: 1 MPTISILNGEEVEYVEVYDEPIHKCQFSNEYAYCYIATINPGESCMWHRHSQDSFYVALA-SCEAINRPTDKPEGELNLKAGDKWWSLYKAKDMVHQVCLPGTCAAPAKFFGVEVLKSPPVYSESPLGGNAYTLL-DQFTIDRARIYDMTLQPGQSTGMHTWNFFATVLCLSDGELSTEG 178
BLAST of mRNA_C-linearis_contig10.489.1 vs. uniprot
Match: A0A835ZHZ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHZ6_9STRA) HSP 1 Score: 131 bits (330), Expect = 3.570e-34 Identity = 69/167 (41.32%), Postives = 89/167 (53.29%), Query Frame = 3 Query: 201 VHDEPIHRRQFSNDNVYIYIAGFRPGETSLWHRHSENTLYMCVGHAAAALNRPTDKEPFVHHASPGDLWWAMSKS-APYVHQVCSLPENTHTSHFFAMEILRPPPVLASRLLEHRCYNLRREDSRPGLARVYDFKLEPGESTGIHKWEFCGVVLCLSDGGGCLEGDR 698
VH EP+H +QFSN VY Y PG H+H+E+T Y + KE F G WW ++K+ P VHQV H S FFA+E L+ PP+ L+H Y L + SR G ARVY ++ PGESTGIH+W+F VVL +SDG EG+
Sbjct: 24 VHAEPMHVKQFSNSWVYSYRVKLVPGRPCEMHKHTEDTFYRALTDGPCKAKTAEGKE-FDQDIKKGSQWWNLNKTEGPMVHQVTLAESFPHRSDFFALEFLKSPPIDGGEPLKHPAYTLDTKYSREGTARVYHLEIGPGESTGIHRWQFFAVVLSVSDGKLTTEGEN 189
BLAST of mRNA_C-linearis_contig10.489.1 vs. uniprot
Match: UPI00166F5ED3 (hypothetical protein n=1 Tax=Marinobacterium nitratireducens TaxID=518897 RepID=UPI00166F5ED3) HSP 1 Score: 94.0 bits (232), Expect = 9.400e-20 Identity = 59/169 (34.91%), Postives = 83/169 (49.11%), Query Frame = 3 Query: 165 AAFDGKLVEYVEVHDEPIHRRQFSNDNVYIYIAGFRPGETSLWHRHSENTLYMCVGHAAAALNRPTDKEPFVHHASPGDLWWAMSKSAPYVHQVCSLPENTHTSHFFAMEILRPPPVLASRLLEHRCYNLRREDSRPGLARVYDFKLEPGESTGIHKWEFCGVVLCLSD 671
A+ DG YV V DEP H +F ND V +Y F PGE+SL+HRH E+TLY+ V A E VH G K P +H+V + + T E+ + P ++A+ L+ + L S R+Y KLEPGE+TG + F G+ + +SD
Sbjct: 19 ASSDG----YVGVADEPQHYHRFENDFVRVYDVRFAPGESSLYHRHDEDTLYVTVRDATIHDQTYQSDECQVHRIPAGLSLCRPHKGEPLIHRVRN--DGTGPMQMIGAEVKKLPEIVAAEPLQAPFHTLLENLSGARRLRLYMIKLEPGETTGPVTYGFSGLTVSISD 181
BLAST of mRNA_C-linearis_contig10.489.1 vs. uniprot
Match: UPI00037123EA (hypothetical protein n=1 Tax=Marinobacterium rhizophilum TaxID=420402 RepID=UPI00037123EA) HSP 1 Score: 90.5 bits (223), Expect = 1.830e-18 Identity = 55/161 (34.16%), Postives = 80/161 (49.69%), Query Frame = 3 Query: 192 YVEVHDEPIHRRQFSNDNVYIYIAGFRPGETSLWHRHSENTLYMCVGHAAAALNRPTDKEPFVHHASPGDLWWAMSKSA-PYVHQVCSLPENTHTSHFFAMEILRPPPVLASRLLEHRCYNLRREDSRPGLARVYDFKLEPGESTGIHKWEFCGVVLCLSD 671
YV+V DEP H +F ND +Y F+PGE SL+HRHS +TLY+ V + ++ + V H P L P +H+V + E E R PPV+A R LE + + + R Y L+PGESTG+ ++ F G+++ SD
Sbjct: 23 YVDVKDEPRHVPRFENDYARVYDVRFKPGEHSLYHRHSVDTLYVAV-YDTRVFDQTYGADHGVTHELPAGLCGCRPHGREPLIHRVRN--EGAGLMQMIGAEHKRSPPVVAERPLEAPLHTPVADPFKGESIRCYQIDLQPGESTGLVEYPFSGLLVSFSD 180
BLAST of mRNA_C-linearis_contig10.489.1 vs. uniprot
Match: UPI0015902AFA (hypothetical protein n=1 Tax=Martelella sp. HB161492 TaxID=2720726 RepID=UPI0015902AFA) HSP 1 Score: 88.2 bits (217), Expect = 1.510e-17 Identity = 54/165 (32.73%), Postives = 80/165 (48.48%), Query Frame = 3 Query: 192 YVEVHDEPIHRRQFSNDNVYIYIAGFRPGETSLWHRHSENTLYMCVGHAAA-----ALNRPTDKEPFVHHASPGDLWWAMSKSAPYVHQVCSLPENTHTSHFFAMEILRPPPVLASRLLEHRCYNLRREDSRPGLARVYDFKLEPGESTGIHKWEFCGVVLCLSD 671
+VEV DEP H +F ND V +Y F PGETSL+HRH+ +T+Y+ V A + T K HH + G P +H+V + + H E+L+ P +++ + L C+ S R Y LEPGE+TG + F G+ + +SD
Sbjct: 26 FVEVFDEPRHYHRFQNDYVRVYDVRFGPGETSLYHRHNIDTMYVTVNDAEVYDHTFQSDASTGK---THHLTAGLSMCRPHGGDPLIHKVRN--DGDGLMHMIGAEVLKLPELVSDKPLSAPCHTQLDNLSGAERLRFYRIALEPGETTGEITYGFSGLTVSISD 185
BLAST of mRNA_C-linearis_contig10.489.1 vs. uniprot
Match: A0A506UAT6_9HYPH (Uncharacterized protein n=1 Tax=Martelella alba TaxID=2590451 RepID=A0A506UAT6_9HYPH) HSP 1 Score: 86.3 bits (212), Expect = 7.940e-17 Identity = 52/162 (32.10%), Postives = 80/162 (49.38%), Query Frame = 3 Query: 192 YVEVHDEPIHRRQFSNDNVYIYIAGFRPGETSLWHRHSENTLYMCVGHAAAALNRPTDKEPFV--HHASPGDLWWAMSKSAPYVHQVCSLPENTHTSHFFAMEILRPPPVLASRLLEHRCYNLRREDSRPGLARVYDFKLEPGESTGIHKWEFCGVVLCLSD 671
+VEV +EP H +F ND V +Y F PGETSL+HRH+ +T+Y+ V A + E HH + G S P +H+V + + H E+L+ P +++ + L C+ S R Y L+PGE+TG + F G+ + +SD
Sbjct: 26 FVEVLNEPRHFHRFQNDYVRVYDVRFGPGETSLYHRHNIDTMYVTVNDAEVYDHTFQSDETTAKTHHLTAGLSMCRPHGSDPLIHKVRN--DGDGLMHMIGAEVLKLPDLVSEKPLSAPCHTQLDNLSGAERLRFYRIALQPGETTGEITYGFSGLTVSISD 185
BLAST of mRNA_C-linearis_contig10.489.1 vs. uniprot
Match: A0A2E4UR35_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E4UR35_9GAMM) HSP 1 Score: 84.7 bits (208), Expect = 1.770e-16 Identity = 54/173 (31.21%), Postives = 88/173 (50.87%), Query Frame = 3 Query: 192 YVEVHDEPIHRRQFSNDNVYIYIAGFRPGETSLWHRHSENTLYMCVGHAAAALNRPT--DKEPFVHHASPGDLWWAMSKSAPYVHQVCSLPENTHTSHFFAMEILRPPPVLASRLLEHRCYNLRREDSRPGLARVYDFKLEPGESTGIHKWEFCGVVLCLSDGGGCLEGDRGD 704
YV V +EP HR +F N +Y G+ +L+HRH+E+TLY+ + AAA+L T +++ G ++ P +H+VC++ + +E+ PP A+ L ++R E+ R R YD KLE G+STG+ + F GV + L+ CL+ G+
Sbjct: 9 YVPVRNEPRHRHRFENQWARVYDVLIPVGDATLYHRHTEDTLYVAI--AAASLRDQTWGEEDARTAEVEAGICICRPHRTRPLIHRVCNVGKGD--MRMIGVEVKDSPPETAANPLAADHVSMRWENER---LRAYDVKLEAGDSTGVLDFSFSGVAIMLTP--ACLKIGEGE 172
BLAST of mRNA_C-linearis_contig10.489.1 vs. uniprot
Match: A0A7S4KS54_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4KS54_9EUKA) HSP 1 Score: 83.2 bits (204), Expect = 1.080e-15 Identity = 56/172 (32.56%), Postives = 85/172 (49.42%), Query Frame = 3 Query: 174 DGKLVEYVEVHDEPIHRRQFSNDNVYIYIAGFRPGETSLWHRHSENTLYMCVGHAAAALNRPTDKEPFVHHASPGDLW-----WAMSKSAPYVHQVCSLPENTHTSHFFAMEIL-----RPPPVLASRLLEHRCYNLRREDSRPGLARVYDFKLEPGESTGIHKWEFCGVVL 659
D + +VEV DEP H+ F N+ ++ A PG+TSL+HRHSENTLY+ + A A + E H A G+++ + P +H VC+L ++F +E+ + PPVL E R Y +RRED V++ K+E G+ H G+V+
Sbjct: 23 DQTIEHFVEVKDEPYHQEFFENEYTRVFYAKIPPGQTSLFHRHSENTLYIVLDDAKACDRIAGEHEINFHDAIRGEMFARTHVHPSGEHTPLIHAVCNL--GGEATNFLGIEVKTQQASQTPPVLE----ESRGY-MRREDLVSPSFSVFELKVEGGKELPEHPLPNRGLVV 187 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.489.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 19 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.489.1 >prot_C-linearis_contig10.489.1 ID=prot_C-linearis_contig10.489.1|Name=mRNA_C-linearis_contig10.489.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=186bp MPNIAAFDGKLVEYVEVHDEPIHRRQFSNDNVYIYIAGFRPGETSLWHRHback to top mRNA from alignment at C-linearis_contig10:1333795..1341696- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.489.1 ID=mRNA_C-linearis_contig10.489.1|Name=mRNA_C-linearis_contig10.489.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=7902bp|location=Sequence derived from alignment at C-linearis_contig10:1333795..1341696- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:1333795..1341696- >mRNA_C-linearis_contig10.489.1 ID=mRNA_C-linearis_contig10.489.1|Name=mRNA_C-linearis_contig10.489.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1116bp|location=Sequence derived from alignment at C-linearis_contig10:1333795..1341696- (Chordaria linearis ClinC8C monoicous)back to top |