mRNA_C-linearis_contig10.487.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig10.487.1 vs. uniprot
Match: A0A6H5L446_9PHAE (UDENN domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L446_9PHAE) HSP 1 Score: 497 bits (1279), Expect = 2.130e-148 Identity = 388/786 (49.36%), Postives = 447/786 (56.87%), Query Frame = 1 Query: 688 PGPTIASPGGPS------AEVSPRNGPGGAWEGLTLTHPLSGDEKDLAFMEFAVIGAGPSTLAGSHPLQPWGQHAEVLSRFPSAEGKGPAGARGKGDGSFVQGLGEFCFPSGARISLVRGG-AAGTLESVPEDRMHLVQFTDCENASTYGCCVTVTHVLQDPSPRLVKRLQEREKMHAAARTLQSFMRSTRSSASG-------GGSSGHLCSTPTPT-GFVGGXXXXXSRFGFQTPPPGSGSAGGPV---DPSNGQGSELSPTSFSGMINRFFSSNPGAEIDTPPFADNDGEVGRSGLPAAAAAAMASGRAY--------SPPRSASAGGERGSPVRGSGTA------VAAAAAAEKTRSPSGVSSXXXXXXXXXXXXXRRRAPSSPCPKTQISADY---PLGAGSQRARSAGYSGGXXXXSMRNGMMREKGNQGTSAGGESVPKNVPGMFSDDESESDAGRSSDTDRDDSFGRGLDNPAAAAASGHISTSSSAVETEVGGRSSGRLGAAGRFEGRDGLDGRKQYPSGRSPI-----RGSDGAGAPSTPPGVTLTSWVAGPHDAVAGAAAGEIVGGTEDGEVTTAAAAAEAEGPSWVVLVERCYVMVSCHRNHPLMFKALRAIADADRSARPGASSSPSPPHSHTVGGATSTTFGGRAGHGASLSPPRMRLGSGIXXXXXXXXXXXXXXXXX---VAXXAAEEAKDRHRRMLRDKFLHQVRTDNSCTEEGKKVSLHCPAYLRAPLEVASTALEQWSTAVLFCCVSEQATLQALDVLLLEKTLVVCG 2916
PGP AS G E+SPR+ WEGLTLT PL+GDEK+L FMEFAV+G PSTL+G+ PL+PWGQ EVLS FP EG +G RGK DGSFVQGLGEFCFP GA ISLVRG GT E+VPEDRMHL+QFTDC+NASTYGCC+TVTHVL DPSPRLV+RLQERE+MH AARTLQ F + + S G S+G+ C+TPT T G GG SRFGFQTPP ++ QG+ + +SFSGMINRFFS NPG D G SG+ AA AA+A G SPPRS VRG T+ VAA A + SP + XXX R+RAPSSPCP+T S +Y P G S R+RSAG+ GXXXX G R G +V KNVPGMFSDDESESDAG SS TD DS G G +S S S V R G +G G Y G P R S P TPPGVTL + P A AA ++GG G A+A SW V VE+ YVMVS HRNHPLMFK L+AIADA+RSARPGA+ S S S + ASLSPPR+ G + VA AAE+AK+RHRRM+RDKFL QVRTD C EEGKKVSL+CPA+LRAPLE+ +LE WSTAVLF CVSE+ L+ALD+LLLEKTLVVCG
Sbjct: 3 PGPANASIDGTKNDPENGPEISPRH----RWEGLTLTPPLTGDEKNLTFMEFAVVGVSPSTLSGTQPLEPWGQAPEVLSGFPVTEGDDASG-RGKRDGSFVQGLGEFCFPCGANISLVRGREGTGTREAVPEDRMHLLQFTDCDNASTYGCCLTVTHVLHDPSPRLVQRLQERERMHQAARTLQRFFTLSAACLSTDEGHHWRGDSTGYGCATPTRTPGEEGGSF---SRFGFQTPPXXXXXXXXXXXXXSAASEQGNSPA-SSFSGMINRFFS-NPGVVAD-----------GGSGV-AAVGAAVADGGGTGPGDDSDKSPPRS----------VRGERTSLRKKRPVAAVAVSPSRPSPP---ASPXXXAALSSSRLRQRAPSSPCPRTSPSGEYCHHPTGM-SGRSRSAGH--GXXXXGNVAGRERSDG---------TVKKNVPGMFSDDESESDAGYSS-TDGGDSLGGGSFEA--------VSFSGSQVANGT------RRGQSGGVRG---------YAKGSCPEMPGAERSSGTPMTPRTPPGVTLRNRTVNPRTVAAAAA---VIGGATKGR----RASAGRGRLSWSVQVEKGYVMVSSHRNHPLMFKVLKAIADAERSARPGANPSSS---SLSPXXXXXXXXXXXXXVIASLSPPRLPSGGVVGVNKSGGGKEKSPSASRFRSVAAAAAEQAKERHRRMVRDKFLQQVRTDKRCIEEGKKVSLYCPAFLRAPLELTPPSLELWSTAVLFGCVSERTILRALDLLLLEKTLVVCG 707
BLAST of mRNA_C-linearis_contig10.487.1 vs. uniprot
Match: A0A4D9CNF6_9STRA (UDENN domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CNF6_9STRA) HSP 1 Score: 132 bits (332), Expect = 2.540e-27 Identity = 88/268 (32.84%), Postives = 125/268 (46.64%), Query Frame = 2 Query: 2915 VSMAATALLSLLDPFKWEGVFVPVVPLTLMDVLDSPVPALVGVQAPFDPLSYALDGVNVLDLDARQSSGQLFMAGMGEKLPVAEDVVSELKKANTLRGSRGRGAGTSAGRSPASRKWDSAGGDSRSPGALNASSTSSWRVGGRGRRGRTGGASLSSSSSTGPRSHFAFQASTFMAGLTPEERGTVVRLRSLVKGHVSSLCGDLGVSEMWRKYGAFNSTTKNFDFHPDWFTEPLEARLRFQVGVARTQMFVSFVERCRQRDSKMTEENQ 3718
VS +TA +SLL PFKW+GVF+P++P L D+L SPVP ++GVQ PFDP + L + L + + KLP+ ++ LK+A+ L R S W A+L H A T+MAGLT +ER + LR + + +V LCGDL WRKYG F+ST++ F+F P WF EP+ L +Q TQMF S+V++ R D + + + Q
Sbjct: 547 VSAISTAFVSLLQPFKWDGVFIPLLPTALSDILQSPVPFVLGVQPPFDPTRST---PHAAALHIGRCKEHLRLPDLTVKLPLCYQLLQALKQASELFSCR----------------------------------RSRW-------------ANL----------HLA----TYMAGLTGDERQALASLRGIFREYVQGLCGDLAYPGAWRKYGTFDSTSETFEFFPSWFLEPMRMMLEYQSAFVHTQMFSSYVDKRRTEDMQKSRQRQ 750
BLAST of mRNA_C-linearis_contig10.487.1 vs. uniprot
Match: A0A7S4QET6_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QET6_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 9.790e-12 Identity = 74/272 (27.21%), Postives = 126/272 (46.32%), Query Frame = 2 Query: 2903 SSCAVSMAATALLSLLDPFKWEGVFVPVVPLTLMDVLDSPVPALVGVQAPFDPLSYALD---------GVNVLDLDARQSSGQLFMAGMGEKLPVAEDVVSELKKAN-TLRGSRGRGAGTSAGRSPASRKWDSAGGDSRSPGALNASSTSSWRVGGRGRRGRTGGASLSSSSSTGPRSHFAFQASTFMAGLTPEERGTVVRLRSLVKGHVSSLCGDLG-VSEMWRKYGAFNSTTKNFDFHPDWFTEPLEARLRFQVGVARTQMFVSFVERCR 3685
+S V+ + ALL LL PFKW GVF+P++P++++D ++SPVP + GV A DP D G++V++L+ +G+L ++ G E ++++ K+ TL R + RS S+ SS+ + G +P+E + ++ H+ + G +G + WR YG FN+ + NF+F+P F EPL A+L+FQ +A+TQ+FV +V++ R
Sbjct: 635 NSAEVTACSCALLELLQPFKWAGVFMPLLPISMLDFVNSPVPFVAGVVAK-DPCHIEKDHRALEAIEEGLSVVNLN----NGKLCISTEGN----LEMLLNQCKEPTFTLLFHEQRLRRLAKDRS---------------------SALSSFHM-------------------------------FIQQGFSPQESVIIHSACVSIERHLRGMSGLVGRCRDGWRHYGKFNANSNNFEFYPSLFVEPLRAKLQFQEMMAQTQLFVGYVDKRR 845
BLAST of mRNA_C-linearis_contig10.487.1 vs. uniprot
Match: A0A7S2KN64_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KN64_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 7.580e-7 Identity = 66/260 (25.38%), Postives = 101/260 (38.85%), Query Frame = 2 Query: 2912 AVSMAATALLSLLDPFKWEGVFVPVVPLTLMDVLDSPVPALVGV--------------QAPFDPLSYALDGVNVLDLDARQSSGQLFMA---GMGEKLPVAEDVVSELKKANTLRGSRGRGAGTSAGRSPASRKWDSAGGDSRSPGALNASSTSSWRVGGRGRRGRTGGASLSSSSSTGPRSHFAFQASTFMAGLTPEERGTVVRLRSLVKGHVSSLCGDLGVS-EMWRKYGAFNSTTKNFDFHPDWFTEPLEARLRFQV 3637
AV+ ATALL LLDP+KW F+P++P ++D + SPVP + G+ D + + L VN++ SG+L + G + L + + EL AL S+ P S+ S F G T E T+ ++++L+K H+S L + W++YG FN T FDF PD F +PL+ R+ FQ+
Sbjct: 206 AVTACATALLELLDPYKWASAFMPLLPREMLDFVSSPVPFIAGMLVDGKQDLHSIIHDHGVKDAMLHGLSIVNLV-------SGKLIVTREQGTSDMLRRSFQTIPEL--------------------------------------ALYQKRLDSYY--------------------RDPSSNLRCFKSFFRHGATLRESLTLKKVKALIKKHLSQFTMGLNDKPDAWQQYGEFNKHTGAFDFSPDKFIQPLKDRMIFQI 400
BLAST of mRNA_C-linearis_contig10.487.1 vs. uniprot
Match: K0TPB2_THAOC (cGMP-dependent protein kinase (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TPB2_THAOC) HSP 1 Score: 62.8 bits (151), Expect = 8.610e-6 Identity = 66/261 (25.29%), Postives = 106/261 (40.61%), Query Frame = 2 Query: 2915 VSMAATALLSLLDPFKWEGVFVPVVPLTLMDVLDSPVPALVGV--------------QAPFDPLSYALDGVNVLDLDARQSSGQLFMA---GMGEKLPVAEDVVSELKKANTLRGSRGRGAGTSAGRSPASRKWDSAGGDSRSPGALNASSTSSWRVGGRGRRGRTGGASLSSSSSTGPRSHFAFQASTFMAGLTPEERGTVVRLRSLVKGHVSSLCGDLGVSEM---WRKYGAFNSTTKNFDFHPDWFTEPLEARLRFQV 3637
V+ TALL LLDP+KW F+P++P ++D + SPVP + G+ D + + L VN++ SG+L + G + L + + EL S R+ SS ++ RS AF F G + +E T++R++ ++K H+S LG+++ WR+YG FN + FDF PD F +PL+ R+ FQ+
Sbjct: 1025 VTACTTALLELLDPYKWASAFMPLLPRDMLDFVSSPVPFIAGMIVENKQHLNSIIQDHGVKDAMLHGLSVVNLV-------SGKLIVTREQGTSDMLRRSFQTIPEL-------------------------------------------SLYQKRL-----------EEYCSSPTSNLRSFDAF----FKHGASRKESLTILRIKRVIKKHMSQFT--LGLTDKPDAWRQYGEFNEASGAFDFCPDKFIQPLKDRMIFQI 1218
BLAST of mRNA_C-linearis_contig10.487.1 vs. uniprot
Match: A0A6A5ZDV0_9PLEO (DDENN domain-containing protein n=1 Tax=Lophiotrema nucula TaxID=690887 RepID=A0A6A5ZDV0_9PLEO) HSP 1 Score: 62.4 bits (150), Expect = 1.100e-5 Identity = 26/66 (39.39%), Postives = 46/66 (69.70%), Query Frame = 2 Query: 2921 MAATALLSLLDPFKWEGVFVPVVPLTLMDVLDSPVPALVGVQAPFDPLSYALDGVNVLDLDARQSS 3118
+A+ A+++LL PFKW GVF+PV+P L+ +++P P +VG++ ++P+ Y D ++DLD+ S
Sbjct: 556 LASAAIVNLLYPFKWAGVFIPVLPSRLIQTIEAPCPYIVGIERRYEPVDYPEDDYVLVDLDSNTIS 621
BLAST of mRNA_C-linearis_contig10.487.1 vs. uniprot
Match: A0A7S3GQI8_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GQI8_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 1.850e-5 Identity = 77/273 (28.21%), Postives = 124/273 (45.42%), Query Frame = 2 Query: 2915 VSMAATALLSLLDPFKWEGVFVPVVPLTLMDVLDSPVPALVGVQAPFDPLSYALDGVNVLDLDARQSSGQLFMAGMGEKLPVAEDVVSELKKANTLRGSRGRG-----AGTSAGRSPASRKW-------DSAGGDSRSPGALNASSTSSWR--VGGRGRRGRTGGASLSSSSSTGPRSHFAFQAS----TFMAGLTPEERGTVVRLRSLVKGHVSSLCGD-LGVSEMWRKYGAFNSTTKNFDFHPDWFTEPLEARLRFQVGVARTQMFVSFVE 3676
V+ +A LL PF WEG+ VP++P+ + LD+PVP ++GV A P VL L+ + ++ ++ + + S +K LR +R R S G K+ DS G + + S + + R ASL + + PR+ AF ++ + M L+ E ++ + + V + +S+CG+ L WR++G NS T F+F PD F PL+A LR Q V TQ+FVSF++
Sbjct: 747 VTAVVSAFTLLLQPFSWEGIHVPLLPMAAYEALDAPVPFVIGVVASSRPAVPISSSAGVLSLNDFIHHPEQYVPSCFDETTMRHTMASRDEK--HLRDTRFRRNFIYPEDGSNGEVDLGLKFFEAPCPEDSQQGIAPLLDPMQCSQLKELHQFIAYHAVKIR---ASLKFAQT--PRAA-AFNSTCAIKSVMNDLSDEALRSLSHVLNRVLAYNTSICGEVLTQPGGWRQFGVLNSRTNQFEFLPDLFMAPLKAHLRLQECVINTQLFVSFMD 1011
BLAST of mRNA_C-linearis_contig10.487.1 vs. uniprot
Match: A0A6A6V855_9PLEO (DENN-domain-containing protein n=1 Tax=Sporormia fimetaria CBS 119925 TaxID=1340428 RepID=A0A6A6V855_9PLEO) HSP 1 Score: 60.8 bits (146), Expect = 3.220e-5 Identity = 26/61 (42.62%), Postives = 42/61 (68.85%), Query Frame = 2 Query: 2921 MAATALLSLLDPFKWEGVFVPVVPLTLMDVLDSPVPALVGVQAPFDPLSYALDGVNVLDLD 3103
+A+ A+ LL PFKW GVF+PV+P L+ +++P P +VG++ ++PL Y D ++DLD
Sbjct: 559 LASLAIAHLLYPFKWAGVFIPVLPARLVQTIEAPCPYIVGIERRYEPLEYPEDEYVLVDLD 619
BLAST of mRNA_C-linearis_contig10.487.1 vs. uniprot
Match: A0A6A6J252_9PLEO (DENN-domain-containing protein n=1 Tax=Trematosphaeria pertusa TaxID=390896 RepID=A0A6A6J252_9PLEO) HSP 1 Score: 60.8 bits (146), Expect = 3.230e-5 Identity = 25/61 (40.98%), Postives = 43/61 (70.49%), Query Frame = 2 Query: 2921 MAATALLSLLDPFKWEGVFVPVVPLTLMDVLDSPVPALVGVQAPFDPLSYALDGVNVLDLD 3103
+A+ A+++LL PFKW GVF+PV+P L+ +++P P +VG++ ++P Y D ++DLD
Sbjct: 556 LASMAIVNLLYPFKWAGVFIPVLPARLIQTIEAPCPYIVGIERQYEPTEYPEDEYVLVDLD 616
BLAST of mRNA_C-linearis_contig10.487.1 vs. uniprot
Match: Q0US70_PHANO (UDENN domain-containing protein n=1 Tax=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) TaxID=321614 RepID=Q0US70_PHANO) HSP 1 Score: 60.5 bits (145), Expect = 3.890e-5 Identity = 24/62 (38.71%), Postives = 44/62 (70.97%), Query Frame = 2 Query: 2921 MAATALLSLLDPFKWEGVFVPVVPLTLMDVLDSPVPALVGVQAPFDPLSYALDGVNVLDLDA 3106
+A+ A+++LL PF+W GVF+P++P L+ +++P P +VG++ ++P Y D ++DLDA
Sbjct: 530 LASMAIVNLLYPFQWAGVFIPILPARLVQTIEAPCPYIVGIERRYEPTDYPEDEYVLIDLDA 591 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.487.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.487.1 >prot_C-linearis_contig10.487.1 ID=prot_C-linearis_contig10.487.1|Name=mRNA_C-linearis_contig10.487.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1297bp MALSSDPATLEDQYGLPEDLSSEEAGMYINGLTQTCAALRCRIAELENDNback to top mRNA from alignment at C-linearis_contig10:1225850..1241227- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.487.1 ID=mRNA_C-linearis_contig10.487.1|Name=mRNA_C-linearis_contig10.487.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=15378bp|location=Sequence derived from alignment at C-linearis_contig10:1225850..1241227- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:1225850..1241227- >mRNA_C-linearis_contig10.487.1 ID=mRNA_C-linearis_contig10.487.1|Name=mRNA_C-linearis_contig10.487.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=7782bp|location=Sequence derived from alignment at C-linearis_contig10:1225850..1241227- (Chordaria linearis ClinC8C monoicous)back to top |