mRNA_C-linearis_contig10.482.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig10.482.1 vs. uniprot
Match: D7FZZ9_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZZ9_ECTSI) HSP 1 Score: 563 bits (1451), Expect = 2.400e-181 Identity = 311/490 (63.47%), Postives = 358/490 (73.06%), Query Frame = 1 Query: 1 GAGVDYWEEVKLEDGSVCFYNHTSQEYSSELLTMEVTTPIDEDPAYPTDEDEYQPDGAAESNNESQLGVWEGRVWDGNDGEVFIPWPEEESQAMKTSPEADVANVERLETPEEEEEEPFTPDDPVIVREQNLRALLVLLPAKIMKDVVKAAMQGAMLHTKRTATAEAERRRRSLLSSKAQFRHTTARS----PKVEDGGTMGDEMDLPSDADREAVETTNTPGSWRNTTTQERDTIVGDKLQEVLRVLYSTSKEEARLTMRAIYLSSQGIGAAGASQLAPALKSCVVVALHLGNNAMGDKGITALVDGLRHARGLQKLHLNDNEASTITDVGCRRLANALAPLKVLSTLDLCHNPFGDKACLSLATYLSQPGCPLRSLSLAGCLDVPPAAWKTITVRDREGMAWEPPRPGDDGAVSLAAALMCPHGCPLRRLRMANAGMKSIGAKAIAAALCANHTLETIDLSGNNFGCKADDNSWESASELLSFGLQVN 1458
G VDYWEEV LEDG+VCFYNHT QEY S L + T P DE QP E ++++ L EG+VWDG DGEVF+PWP+EE M+ SP+A VA+ + LET E ++EEPFTPDDP +VREQNLRALLVLLPAK+M V+KAAM+GAMLHT+RTATA+AE+RRR LLSS+AQFRHT ++ K +DG DE + A+ E V++ TP S RNTTTQERDTIVG KLQEVLRVLYSTS EEAR+TMRAIYLSSQGIGAAGA QLAPALK CV+VALHLGNNA+GDKG+ +L DGLRHARGLQKL LSLA YLSQ GCPLRSLSLAGCLDV PAAWKTI VR +EGM W+PPRPGDDGAVSLAAAL+ PHGCPLRRLRMANAGMK+IGAKAIA ALCAN TLET+D+SGN+FG D ++WESA++LLSFGLQ +
Sbjct: 24 GTEVDYWEEVALEDGTVCFYNHTRQEYFSLLPANDATN------GCPASVDEAQPTAVGEFSHDNSLEPLEGQVWDGVDGEVFVPWPDEE---MRASPDAVVAHNKALETTEGDDEEPFTPDDPAVVREQNLRALLVLLPAKLMNGVIKAAMEGAMLHTRRTATADAEKRRRLLLSSRAQFRHTAKKNCQGDMKHKDGDGFDDETEEGPTAEGETVDSAETPDSRRNTTTQERDTIVGHKLQEVLRVLYSTSTEEARVTMRAIYLSSQGIGAAGAQQLAPALKDCVIVALHLGNNALGDKGLCSLADGLRHARGLQKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---LSLAIYLSQQGCPLRSLSLAGCLDVDPAAWKTINVRGKEGMRWDPPRPGDDGAVSLAAALISPHGCPLRRLRMANAGMKTIGAKAIATALCANRTLETVDVSGNDFGSTTDASAWESAADLLSFGLQAS 501
BLAST of mRNA_C-linearis_contig10.482.1 vs. uniprot
Match: A0A6H5KJE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJE5_9PHAE) HSP 1 Score: 236 bits (602), Expect = 7.960e-68 Identity = 134/179 (74.86%), Postives = 152/179 (84.92%), Query Frame = 1 Query: 4219 LLRGSGEEDEEGNAILPEIDDRFLTVGQRLRRLRDAREGVQREKQRAYLEYSRQVKRNIRARKRFILAEKRAGRIAQLMDTQQLVEGLKERGYSTEGSEDLDQLRRVFVEGIKPEMRVRLHATSRWTKSRNKLRERTNDAVKIGEIVARRQRLLLSMGAAQPVFAQRGVGHGVRHAATM 4755
+LRGSGEEDEEGN ILPEIDDRFLTVGQRLRRLRDAR+ ++REKQRA+LEYSRQVK N+R RKRF+LAEKRAGRIA+ MDT+QLVE LKERGY+T+GSE LDQLRRVF+EGI+PE+RVRLHATSRWTKSRNK RERT D V++GEIVARRQ+L S P VRHAAT+
Sbjct: 1 MLRGSGEEDEEGNPILPEIDDRFLTVGQRLRRLRDARDNLEREKQRAHLEYSRQVKSNLRERKRFVLAEKRAGRIAKSMDTKQLVEALKERGYATKGSEQLDQLRRVFIEGIQPEIRVRLHATSRWTKSRNKHRERT-DTVEVGEIVARRQQLTSSKRVT-PFSPSPITRLNVRHAATV 177
BLAST of mRNA_C-linearis_contig10.482.1 vs. uniprot
Match: D7FZZ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZZ8_ECTSI) HSP 1 Score: 80.9 bits (198), Expect = 5.730e-13 Identity = 40/48 (83.33%), Postives = 45/48 (93.75%), Query Frame = 1 Query: 4228 GSGEEDEEGNAILPEIDDRFLTVGQRLRRLRDAREGVQREKQRAYLEY 4371
GSGEEDEEGN ILPEIDDRFLTVGQRLRRLRDAR+ +QREK RA+++Y
Sbjct: 190 GSGEEDEEGNRILPEIDDRFLTVGQRLRRLRDARDNLQREKHRAHMKY 237
BLAST of mRNA_C-linearis_contig10.482.1 vs. uniprot
Match: UPI0007A6E2E8 (ribonuclease inhibitor n=1 Tax=Miniopterus natalensis TaxID=291302 RepID=UPI0007A6E2E8) HSP 1 Score: 69.7 bits (169), Expect = 2.650e-8 Identity = 61/181 (33.70%), Postives = 78/181 (43.09%), Query Frame = 1 Query: 856 LHLGNNAMGDKGITALVDGLRHARG-LQKLHLNDNEASTITDVGCRRLANALAPLKVLSTLDLCHNPFGDKACLSLATYLSQPGCPLRSLSLAGC----LDVPPAAWKTITVRDREGMAWEPPRPGDDGAVSLAAALMCPHGCPLRRLRMANAGMKSIGAKAIAAALCANHTLETIDLSGN 1383
L LGNN +GD GIT L GL L+ L L + + IT GCR L L + L L L N G++ L L QP C L SL + C P R + + GD G L L P G LR L + + + G ++AA L ANH+L +DLS N
Sbjct: 236 LELGNNKLGDAGITELCPGLLSPSSRLKTLWLWECD---ITVSGCRDLCRVLRAKESLKELSLAGNAVGNEGIQLLCESLVQPSCQLESLWVKSCSLTAACCPRVGAMLAQNRSLQELQMSSNNLGDVGVEELCQGLRQP-GTTLRALWLGDCEVTDQGCHSLAALLLANHSLRELDLSNN 412
BLAST of mRNA_C-linearis_contig10.482.1 vs. uniprot
Match: UPI0018F73B25 (NACHT, LRR and PYD domains-containing protein 3-like isoform X1 n=4 Tax=Scyliorhinus canicula TaxID=7830 RepID=UPI0018F73B25) HSP 1 Score: 69.7 bits (169), Expect = 5.020e-8 Identity = 63/215 (29.30%), Postives = 98/215 (45.58%), Query Frame = 1 Query: 763 TMRAIYLSSQGIGAAGASQLAPALKSCVVVALHLGNNAMGDKGITALVDGLRHAR-GLQKLHLNDNEASTITDVGCRRLANALAPLKVLSTLDLCHNPFGDKACLSLATYLSQPGCPLRSLSLAGCLDVPPAAWKTITVRDREGMAWE----PPRPGDDGAVSLAAALMCPHGCPLRRLRMANAGMKSIGAKAIAAALCANHTLETIDLSGNNFG 1392
T++ + L + I G +L P L C V L LGNN +GD G+ L LR+ +QKL LN N T+TD + LA L+ ++L LDL +N GD +L+ L C L+ L L + A ++ E + GD G L+ AL P C +++L + + A+ + + L N +L ++L+ N G
Sbjct: 705 TIKELDLENCCIQCEGLQRLGPILHKCQV--LRLGNNKLGDPGVKLLSVALRNPDCKIQKLGLNSN---TLTDSCTQDLALLLSANRLLKDLDLGNNKLGDSGVTALSVALRDLACKLQKLELYENILTDSCAQDLASILSTNQSLMELNLGNNKLGDSGVKLLSVALRTPD-CKIQKLLLYKNHVSHSCAEDLVSVLSTNRSLTVLNLNNNKLG 913
BLAST of mRNA_C-linearis_contig10.482.1 vs. uniprot
Match: H0WCD9_CAVPO (NLR family pyrin domain containing 3 n=1 Tax=Cavia porcellus TaxID=10141 RepID=H0WCD9_CAVPO) HSP 1 Score: 65.5 bits (158), Expect = 9.890e-7 Identity = 49/140 (35.00%), Postives = 68/140 (48.57%), Query Frame = 1 Query: 763 TMRAIYLSSQGIGAAGASQLAPALK-SCVVVALHLGNNAMGDKGITALVDGLRHARG-LQKLHLNDNEASTITDVGCRRLANALAPLKVLSTLDLCHNPFGDKACLSLATYLSQPGCPLRSLSLAGCLDVPPAAWKTITV 1176
T+ ++L S G+ +A LA L SC + L++G NA+GD G++ L + LQKL L + S +T +GC LA+ L + L+ L L N GD L L PGC LR L L C + W TV
Sbjct: 809 TLNKLWLVSCGLTSACCEDLASVLSTSCSLTRLYIGENALGDTGVSTLCGKAQWQESHLQKLGLVN---SGLTFMGCSALASVLRTTRSLTHLYLRGNALGDAGLKLLCEGLLHPGCELRMLELDNCSLTSHSCWDLSTV 945
BLAST of mRNA_C-linearis_contig10.482.1 vs. uniprot
Match: UPI001B34E47E (NACHT, LRR and PYD domains-containing protein 3 n=5 Tax=Ochotona TaxID=9977 RepID=UPI001B34E47E) HSP 1 Score: 64.3 bits (155), Expect = 2.240e-6 Identity = 51/148 (34.46%), Postives = 70/148 (47.30%), Query Frame = 1 Query: 856 LHLGNNAMGDKGITALVDGLRHAR-GLQKLHLNDNEASTITDVGCRRLANALAPLKVLSTLDLCHNPFGDKACLSLATYLSQPGCPLRSLSLAGCLDVPPAAWKTITV----RDREGMAWEPPRPGDDGAVSLAAALMCPHGCPLRRL 1284
L+LG NA+GD G++ L D L+H + L+KL L +S +T V C ++ AL K L+ L L N GD L L P C L+ L L C W + R + ++ GD G + L L P GCPL+RL
Sbjct: 860 LYLGENALGDDGVSLLCDKLKHPQCSLRKLGL---VSSGLTSVCCAAISAALGSSKSLTHLYLRGNALGDNGLKLLCQGLLHPSCRLQMLELDSCSLSSHCCWDLCRLLTSNRSLQKLSLGSNDLGDLGVMMLCEVLRQP-GCPLQRL 1003
BLAST of mRNA_C-linearis_contig10.482.1 vs. uniprot
Match: UPI001CFE1C66 (NACHT, LRR and PYD domains-containing protein 12-like n=1 Tax=Gracilinanus agilis TaxID=191870 RepID=UPI001CFE1C66) HSP 1 Score: 59.7 bits (143), Expect = 5.840e-5 Identity = 70/242 (28.93%), Postives = 102/242 (42.15%), Query Frame = 1 Query: 847 VVALHLGNNAMGDKGITALVDGLRHAR-GLQKLHLN----DNEASTITDVGCRRLANALAPLKVLSTLDLCHNPFGDKACLSLATYLSQPGCPLRSLSLAGCLDVPPAAWKTITVRDREGMAWEPPRP----GDDGAVSLAAALMCPHGCPLRRLRMANAGMKSIGAKAIAAALCANHTLETIDLSGNNFGCKADDNSWESASELLSFGLQ-VNRTVHTIVLRACGLR----REQVFAIQAN 1530
++ L L N +G G+ L +GLRH + LQ L L D EA C+ L+ L+ + L+ LDL N GD L LS C L++L L C P A +V E GD G SL L C L+ LR+ + + +A++ L +N L+ +D+S N+ + LL GLQ N +H + L +C L R+ A+ AN
Sbjct: 784 LIRLDLSRNILGATGVRLLCEGLRHPKCRLQMLQLRRCQVDGEA-------CQELSKVLSTSQHLTELDLTGNALGDLGLQFLCPGLSHSACKLQTLWLKICHLTPAACQNLSSVLSTSQNLTELDLSLNDLGDAGVKSLCEGL-CHSKSQLQTLRLGICRLTFVSCEALSTTLQSNVHLKALDVSFNDLE--------DMGVHLLCEGLQHPNCKLHKLWLDSCCLSGAACRDLASALGAN 1009 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.482.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.482.1 >prot_C-linearis_contig10.482.1 ID=prot_C-linearis_contig10.482.1|Name=mRNA_C-linearis_contig10.482.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1553bp MEVTTPIDEDPAYPTDEDEYQPDGAAESNNESQLGVWEGRVWDGNDGEVFback to top mRNA from alignment at C-linearis_contig10:1128885..1143909+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.482.1 ID=mRNA_C-linearis_contig10.482.1|Name=mRNA_C-linearis_contig10.482.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=15025bp|location=Sequence derived from alignment at C-linearis_contig10:1128885..1143909+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:1128885..1143909+ >mRNA_C-linearis_contig10.482.1 ID=mRNA_C-linearis_contig10.482.1|Name=mRNA_C-linearis_contig10.482.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=9318bp|location=Sequence derived from alignment at C-linearis_contig10:1128885..1143909+ (Chordaria linearis ClinC8C monoicous)back to top |