mRNA_C-linearis_contig10.476.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig10.476.1 vs. uniprot
Match: D7G013_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G013_ECTSI) HSP 1 Score: 244 bits (623), Expect = 5.550e-73 Identity = 162/304 (53.29%), Postives = 188/304 (61.84%), Query Frame = 3 Query: 432 MSSSGDAVRFLLRRDSSTLEAEDRDGRTALHLASGHRLGSDGTLLALLEAGANIEAKTCLVETPLHEACKALRVSAVQQVLRFGADDGAVDRGGRTPSALTSALLQSQCPGMFRDMLKIILQLLAAAPADKVWRRRGWLLMLRSRQLEEVGPGTQSSIVVEQGFDIERGVCAGVFADGGAVSWRHSM--DQEEGNRHSSNGSSRGSSGRPRKVGKAGSTARXXXXXXXXXXXXXDGALVARERSNNCCLERNGER-GTFRPGKVGGGEACHDGGGEGHQQLRAAVERVVGVCEDGVFRNIVAFL 1334
MS SG AVRFLL RD S+LEA D DGRTALHLASGHRLGSD TL AL+E+ NIEA+T L ETPLH+ACKALRVSAV+Q+LRFGA+D AVD GRTP+A+T+ LL SQ PGMFRDML+ IL LL AAP D+VWRRRGWLLMLR VG SS E G E+GV AG A + ++E H + RPRKVGKAG A A RE+ + C + E G + E+C D G G ++LR+ VER V V EDGVFRNIVAFL
Sbjct: 1 MSGSGAAVRFLLDRDISSLEARDHDGRTALHLASGHRLGSDETLRALVESNGNIEARTFLGETPLHKACKALRVSAVEQLLRFGANDAAVDAEGRTPAAMTARLLLSQRPGMFRDMLQNILTLLEAAPGDRVWRRRGWLLMLR-----RVG----SSTATEPGSCHEKGVVAGARATPAGTRAIPGLFGAEKEAYEHKA---------RPRKVGKAGDAA--------VARATRKAAGGKREQHHPWCYQSTTEAAGVWSGVHSAAAESCRDEAG-GDRELRSVVERAVDVDEDGVFRNIVAFL 277
BLAST of mRNA_C-linearis_contig10.476.1 vs. uniprot
Match: D7G014_ECTSI (Ankyrin domain protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G014_ECTSI) HSP 1 Score: 129 bits (324), Expect = 8.340e-30 Identity = 112/141 (79.43%), Postives = 121/141 (85.82%), Query Frame = 3 Query: 3 TPLHLAASGGHLPMVKALVRAGAETDVEDENGDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAHGSLGMVRAILRGSRGNTLLLCHTDHLEMSPLHRAALGGHCDVMEELLSHGSSLHSLAGNARTPLHA 425
TPLH AASGGH+ MV+AL+ AGA+ D D + XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAHGSLGMV+AILRGSR + L C TDHLEM PLHRAALGGHC+VM ELL GSSLH+LAGNART LHA
Sbjct: 150 TPLHFAASGGHVSMVRALIGAGADLDTADGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAHGSLGMVKAILRGSRESNLP-CPTDHLEMPPLHRAALGGHCEVMSELLRQGSSLHTLAGNARTALHA 289
BLAST of mRNA_C-linearis_contig10.476.1 vs. uniprot
Match: D8LQI9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQI9_ECTSI) HSP 1 Score: 115 bits (288), Expect = 4.870e-25 Identity = 83/203 (40.89%), Postives = 111/203 (54.68%), Query Frame = 3 Query: 294 TDHLEMSPLHRAALGGHCDVMEELLSHGSS-LHSLAGNARTPLHAAAM-----SSSGDAVRFLLRRDSSTLEAEDRDGR-TALHLASGHRLGSDGTLLALLEAGANIEAKTCLVETPLHEACKALRVSAVQQVLRFGADDGAVDRGGRTPSALTSALLQSQCPGMFRDMLKI------ILQLLAAAPADKVWRRRGWLLMLRS 863
T+ SPL AA GGH DV++ LL SS L G LH AA+ +GDAVR LL + E + D T LH+A R SDGT+ ALLE G+NI A+ L +TPLH ACK V+ V+ +LR+GAD+ + G+TP+ + Q+ F D + I ++L APAD+ WRRRGWL++ RS
Sbjct: 79 TEGTRCSPLEIAAHGGHADVLKALLDKDSSQLDDTDGEGWAALHYAAVVDGPVRDNGDAVRVLLGAGADVNETNNNDSCFTPLHIAVNGRKVSDGTVRALLEGGSNIHARALLDQTPLHIACKHASVTGVELLLRWGADEKLTNNVGKTPADVIRPRRQND----FDDEEEREADNQRIRRMLEHAPADRSWRRRGWLVLSRS 277
BLAST of mRNA_C-linearis_contig10.476.1 vs. uniprot
Match: D8LQN0_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQN0_ECTSI) HSP 1 Score: 108 bits (271), Expect = 1.820e-21 Identity = 81/198 (40.91%), Postives = 106/198 (53.54%), Query Frame = 3 Query: 294 TDHLEMSPLHRAALGGHCDVMEELLSHGSSLHSLAGNAR-TPLHAAA-----MSSSGDAVRFLLRRDSSTLEAEDRDG-RTALHLASGHRLGSDGTLLALLEAGANIEAKTCLVETPLHEACKALRVSAVQQVLRFGADDGAVDRGGRTPSALTSALLQSQCPGMFRDM-LKIILQLLAAAPADKVWRRRGWLLMLRS 863
T+ SPL AA GH DV++ LL SS A + LH A + GDAVR LL + D T LHLA + S GT+ ALLE GANI A+T +TPLH AC LR S V+ +LR+GAD+ + G TP+ + L Q+ R+ + I ++LA APAD+ WRRRGWL++ RS
Sbjct: 241 TNGSRCSPLEIAAGRGHADVLKALLDKRSSEVDTANDLGWAALHYVASFDETVRDKGDAVRVLLGAGADVNVKGTNDSCATPLHLAVNRWMTSTGTICALLEGGANINARTAGDDTPLHIACTRLRGSVVELLLRWGADEKLPNNDGDTPADVVGVLEQNDLDDEEREADNQRIHRMLARAPADRSWRRRGWLVLSRS 438
BLAST of mRNA_C-linearis_contig10.476.1 vs. uniprot
Match: A0A6H5L812_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L812_9PHAE) HSP 1 Score: 103 bits (256), Expect = 1.110e-19 Identity = 77/193 (39.90%), Postives = 104/193 (53.89%), Query Frame = 3 Query: 312 SPLHRAALGGHCDVMEELLSHGSS-LHSLAGNARTPLHAAA-----MSSSGDAVRFLLRRDSSTLEAEDRDG-RTALHLASGHRLGSDGTLLALLEAGANIEAKTCLVETPLHEACKALRVSAVQQVLRFGADDGAVDRGGRTPSALTSALLQSQCPG--MFRDMLKIILQLLAAAPADKVWRRRGWLLMLRS 863
SPL AA G DV++ LL S + + G LH AA + +GDAVR LLR + +D T+L+LA R+ SDGT+ ALLE GANI A+ +TPLH AC V+ +LR+GADD G+TP+ + AL Q + D +I ++LA PA + WRRRGWL++ RS
Sbjct: 208 SPLEIAANRGQADVVKALLDKDSGEVDATDGGGWAALHYAASIDGPVRDNGDAVRVLLRAGADVSAKGTKDPCDTSLYLAVNRRIASDGTIRALLEGGANINARIGGDQTPLHVACSRSSAVGVELLLRWGADDKLTTNVGQTPAHVVRALQQDDLDDEELEADNQRIR-RMLARDPAARSWRRRGWLVLSRS 399
BLAST of mRNA_C-linearis_contig10.476.1 vs. uniprot
Match: D8LP53_ECTSI (EsV-1-21 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP53_ECTSI) HSP 1 Score: 89.4 bits (220), Expect = 3.390e-15 Identity = 74/223 (33.18%), Postives = 113/223 (50.67%), Query Frame = 3 Query: 228 GSLGMVRAI-LRGSRGNTLLLCHTDHLEMSP-----LHRAALGGHCDVMEELLSHGSSLHSLAGNARTPLHAAAMSSSGDAVRFLLRRDSSTLEAEDRDGRTALHLASGHRLGSDGTLLALLEAGANIEAKTCLV-ETPLHEAC--KALRVSAVQQVLRFGADDGAVDRGGRTPSALTSALLQSQCPGMFRDMLKIILQLLAAAPADKVWRRRGWLLMLRSRQ 869
G+L +V+A+ +G + H H ++ P LH AA GGH DV+ LL + + ++ GN TPL ++S + V L + AED+ G ++L A+ D LL LL GA++ + L + LH AC + + V +LR+GAD+ VD GRTP + L + + + + +LL APAD+ WRRRGWL+ML R+
Sbjct: 205 GNLPVVKALSTKGVDLDGTAEYHPSHSDIIPGQATALHAAAFGGHNDVVNFLLENSVRIDAVDGNMMTPL-ICSVSENHLCVSATLLEAGAAASAEDQTGTSSLSYAAASSSSVDMALL-LLRYGADVNTRCYLFGSSVLHNACTNRDNTEALVDLLLRWGADETVVDSSGRTPM---NHLTEDRFTRHSAETKDKVRKLLVNAPADRTWRRRGWLVMLCERE 422
BLAST of mRNA_C-linearis_contig10.476.1 vs. uniprot
Match: A0A6H5JXF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXF0_9PHAE) HSP 1 Score: 85.1 bits (209), Expect = 1.090e-14 Identity = 57/141 (40.43%), Postives = 79/141 (56.03%), Query Frame = 3 Query: 444 GDAVRFLLRRDSSTLEAEDRDGR-TALHLASGHRLGSDGTLLALLEAGANIEAKTCLVETPLHEACKALRVSAVQQVLRFGADDGAVDRGGRTPSALTSALLQSQCPGMFRDM-LKIILQLLAAAPADKVWRRRGWLLMLR 860
GDAVR LL D T LH+A R+ SDGT+ ALLE GA+++++ +TPLH ACK VS V+ +LR+GAD+ + G P+ + A Q D + I ++L APAD+ WRRRGWL++ R
Sbjct: 60 GDAVRVLLGAGVDVNVNTTTDSCFTPLHVAVDGRIASDGTIRALLE-GADVDSRARHDQTPLHIACKHASVSGVELLLRWGADEQLTNNRGDMPADVIRARQQGDLDDEEHDADNQRICRMLTRAPADRSWRRRGWLVLSR 199
BLAST of mRNA_C-linearis_contig10.476.1 vs. uniprot
Match: A0A6H5K6K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6K9_9PHAE) HSP 1 Score: 84.3 bits (207), Expect = 1.890e-14 Identity = 62/177 (35.03%), Postives = 84/177 (47.46%), Query Frame = 3 Query: 444 GDAVRFLLRRDSSTLEAEDRDGR--TALHLASGHRLGSDGTLLALLEAGANIEAKTCLVETPLHEACKALRVSAVQQVLRFGADDGAVDRGGRTPSALTSALLQSQ---------CPGMFRDMLKII-------LQLLAAAPADKVWRRRGWLLMLRSRQLEEVGPGTQSSIVVEQG 920
GD VR LL + DG T LH A R+ G + ALLE GAN+ A+ +TPLH AC V+ V+ +L +GAD+ D G TP+ A++ S+ PG R + I Q+LA APAD+ W RR WL++ RS + T SS + G
Sbjct: 38 GDTVRVLLEAGADVDAKTTGDGNCATPLHYAVNRRIAPIGAIRALLEGGANVNARDVFDQTPLHVACARSSVNGVEFLLHWGADEKLTDLDGETPAG---AIVDSEEETPPDVTDAPGENRGKDEAIEADQHRIRQMLARAPADRSWHRRRWLVLSRSCPTKVQISNTSSSSNISSG 211
BLAST of mRNA_C-linearis_contig10.476.1 vs. uniprot
Match: A0A6H5JHD6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHD6_9PHAE) HSP 1 Score: 85.9 bits (211), Expect = 2.390e-14 Identity = 70/184 (38.04%), Postives = 94/184 (51.09%), Query Frame = 3 Query: 312 SPLHRAALGGHCDVMEELLSHGSSLHSLAGNARTPLHAAAMSSSGDAVRFLLRRDSST-LEAEDRDGRTALHLASGHRLGSDGTLLALLEAGANIEAKTCLVETPLHEACKALRVSAVQQVLRFGADDGAVDRGGRTPSALTSALLQSQCPGMFRDMLKIILQLLAAAPADKVWRRRGWLLMLR 860
SPL AA GGH +V ++LH A + A+ +GDAVR LL + +EA + T LHLA+ HR+ SDGT+ ALLE GANI A T ETPLHEAC L V+ V+ +L +GAD+ + G TP+ D++ + WRRRGWL++ R
Sbjct: 166 SPLEVAANGGHGNV--------AALHCAA------VFVVAVRDNGDAVRALLGAGADVNVEATNNICFTPLHLAACHRIASDGTIRALLEGGANINACT-EDETPLHEACWHLSVAGVELLLHWGADEKLTNDVGDTPA----------------DVI-----------GTRSWRRRGWLVLSR 307
BLAST of mRNA_C-linearis_contig10.476.1 vs. uniprot
Match: D7FXA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXA8_ECTSI) HSP 1 Score: 82.4 bits (202), Expect = 6.620e-13 Identity = 69/186 (37.10%), Postives = 96/186 (51.61%), Query Frame = 3 Query: 348 DVMEELLSHGSSLHSLAGNARTPLHAAAMSSSGDAVRFLLRRDSST-LEAEDRDGRTALHLASGHRLGSDGTLLALLEAGANIEAKTCLVETPLHEACKA---LRVSAVQQVLRFGADDGAVDRGGRTPSALTSAL---LQSQCPGMFRDM--LKIILQLLAAAPADKVWRRRGWLLMLRSRQLEE 878
DVM+ LL HG ++ + + PLH AA +S + LL + ++ DGRT+LH A+ G++ LLALL GAN+ T T LH + V +LR GA + AVDR G+ P L + QS P + L+ ++LLA APAD+ WRRR WL+MLR R +E
Sbjct: 238 DVMKALLEHGVDVN-VGEDHWNPLHWAAQFNSTGCITVLLDAGADIDVKCSFLDGRTSLHFAA--ETGNNEALLALLRRGANVHQTTDDGSTALHLVSEMEGHAPDDTVDILLRRGASEQAVDRNGKAPVDLFKRVQRRFQSARPMGDSEWPELERAIELLARAPADRTWRRRCWLIMLRERTNKE 420 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.476.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.476.1 >prot_C-linearis_contig10.476.1 ID=prot_C-linearis_contig10.476.1|Name=mRNA_C-linearis_contig10.476.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=432bp MVKALVRAGAETDVEDENGDTPVHLAVFRGFEQVVEELVTAGASVDTIDAback to top mRNA from alignment at C-linearis_contig10:1060808..1063373+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.476.1 ID=mRNA_C-linearis_contig10.476.1|Name=mRNA_C-linearis_contig10.476.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2566bp|location=Sequence derived from alignment at C-linearis_contig10:1060808..1063373+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:1060808..1063373+ >mRNA_C-linearis_contig10.476.1 ID=mRNA_C-linearis_contig10.476.1|Name=mRNA_C-linearis_contig10.476.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2592bp|location=Sequence derived from alignment at C-linearis_contig10:1060808..1063373+ (Chordaria linearis ClinC8C monoicous)back to top |