Homology
BLAST of mRNA_C-linearis_contig10.463.1 vs. uniprot
Match:
A0A6H5JBH3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBH3_9PHAE)
HSP 1 Score: 94.4 bits (233), Expect = 1.790e-16
Identity = 53/160 (33.12%), Postives = 86/160 (53.75%), Query Frame = 1
Query: 832 AGGIACLDALAITLNAAVERGLWYSSTSTKELQMVCLDLCVACRSSWNISTMHVVVTATTSRHLWLHGGQDDDGKKRHDA-LRVPRLPVRAVTVSKWPKRVLPCPPNRERPLSHIRR------VLRRGSNRLGWGPRWWPETLEEVRFGDEFNRPVNDLV 1290
+G CL+ALA+ + ++G+W++ST T L+ VCLD+ ++CR+ HV VT T R LWL G +D + R+P VR V++ ++P +VL P ERP + + V + + WWP+++EE+RFG FN P++ +
Sbjct: 3 SGQRRCLEALAVAIRNTSDKGVWFASTRT--LKTVCLDIYLSCRNRATARACHVEVTVDTPRRLWLRGEEDALSLNSNGPPSRIPPPAVRVVSLEEYPAQVLARAPKEERPTTTLDASGLPADVGQVALDEPKQSREWWPDSVEELRFGSRFNHPLDSSI 160
BLAST of mRNA_C-linearis_contig10.463.1 vs. uniprot
Match:
A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE)
HSP 1 Score: 62.4 bits (150), Expect = 4.290e-6
Identity = 53/178 (29.78%), Postives = 71/178 (39.89%), Query Frame = 1
Query: 844 ACLDALAITLNAAVERGLWYSSTSTKELQMVCLDLCVACRSSWNISTMHVVVTATTSRHLWLHGGQDDDGKKRHDALRVPRLPVRAVTVSK---------------------------------WPKRVLPCPPNRERPLSHIRRVLRRGSNRLGWGPRWWPETLEEVRFGDEFNRPV 1278
+CL L + LN + WY TSTKELQ+ L+LC+ACR + T+H+ V A T R L KR RVPRL R T + WP+R+ + PL NRL G W P +L +V G +FN+P+
Sbjct: 135 SCLKTLTVALNETCDGKSWY--TSTKELQLASLELCMACR---HYQTLHLTVDAHTPRRLLAAADAPSPHPKRLCGTRVPRLRARRATWNVPTASGMRTSIFATMDVDYLEFGQAFHGSLDAIVWPRRLKTIEFRQSSPL-----------NRLLDGVSW-PASLRKVCLGHDFNQPI 295
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.463.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 1.79e-16 / Id = 33.13 Expect = 4.29e-6 / Id = 29.78 Sequence A0A6H5JBH3_9PHAE A0A6H5KPY7_9PHAE back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Exons 2 Model size 3463 Cds size 807 Stop 1 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927330.278526-UTR-C-linearis_contig10:922111..923957 1622927330.278526-UTR-C-linearis_contig10:922111..923957 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig10 922112..923957 - 1690879629.9616246-UTR-C-linearis_contig10:922111..923957 1690879629.9616246-UTR-C-linearis_contig10:922111..923957 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig10 922112..923957 - 1622927330.3401163-UTR-C-linearis_contig10:925007..925817 1622927330.3401163-UTR-C-linearis_contig10:925007..925817 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig10 925008..925817 - 1690879629.9879425-UTR-C-linearis_contig10:925007..925817 1690879629.9879425-UTR-C-linearis_contig10:925007..925817 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig10 925008..925817 -
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927330.287398-CDS-C-linearis_contig10:923957..924739 1622927330.287398-CDS-C-linearis_contig10:923957..924739 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig10 923958..924739 - 1690879629.9719136-CDS-C-linearis_contig10:923957..924739 1690879629.9719136-CDS-C-linearis_contig10:923957..924739 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig10 923958..924739 - 1622927330.3310215-CDS-C-linearis_contig10:924982..925007 1622927330.3310215-CDS-C-linearis_contig10:924982..925007 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig10 924983..925007 - 1690879629.9795978-CDS-C-linearis_contig10:924982..925007 1690879629.9795978-CDS-C-linearis_contig10:924982..925007 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig10 924983..925007 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.463.1
>prot_C-linearis_contig10.463.1 ID=prot_C-linearis_contig10.463.1|Name=mRNA_C-linearis_contig10.463.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=269bp
MVQTTKRAGGIACLDALAITLNAAVERGLWYSSTSTKELQMVCLDLCVAC back to top mRNA from alignment at C-linearis_contig10:922112..925817-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.463.1 ID=mRNA_C-linearis_contig10.463.1|Name=mRNA_C-linearis_contig10.463.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3706bp|location=Sequence derived from alignment at C-linearis_contig10:922112..925817- (Chordaria linearis ClinC8C monoicous)CGACTCGTCCTTGGGTAGAAGTCGACGCTTGGCAAGACAGATCCAGGCAG
CTGAAAAAGGTATGTCACCGGGCTGTCGGCATTATTTCTACATGACGCAG
CGGGTTTGCATTGAAGATGTCTTGAGCGAGTTTGTTTGCCTCTGTAAATA
CGGAGAAAATTGAAGAGGAGGCAGGTCCCGCCCAAGCGCAATGCGGGTGC
TTGCAGTTAACGGGATGAAATCGTATGCGCAGATCAACAGAGTGCTTCAT
TTTCTCAAGAAGACATGCTTATTCAGTCGTCACATCTCGAAGGGTACGAG
TACCGAGTATCTGTCTCTGGTTCCAACTCCAGCGCCGTTGTTGCCAGATA
TACCGGCTGACACAACGAGCATGCTCTCGAGTTTTTGGTGTCATCATGAG
TGTTGCAGCTTATTGGTGCCGCACAACACGGCAGCCTTTTTAGCCGAATT
GGCGTTGCGTCCCCCCTGTTGTCGGCCACGGCTAGACTAATCTAGACTAG
ACTATACCGTATATTTCGAGTTGGATATATAACAGCGTCTTCCTCTCTCC
CCCCCTCTCAAGCGTCTGGCTTTGCGTGTATCTGTACACAAACCGCCCCA
CCAGGAACCTACTTGCAAACAGGGAGGCAGCCATCGCTTGAAACGTGCTG
TACGATTGCCAGCGAGGTTTCATCTCCGGAAGCTAGCGTTCTTGACTGCC
GCTCTCTTCCACATTACTACTTTGAGGAGGAGGAGCCAGTTGGGTCTCTG
GACTAGAATGCTTGTGGAGGCGGCTCAATTCCCCCCGTGAAGACACTGCA
CGGAGGAGAG ATGGTGCAGACAACAAAACGTGCAG GTTGGTGGTCGGCTT
GATCGGATGTGGTTGGTAGCGTTAGACGCCGGTCCTACTTGCGCGCGGAG
CGAACAGCCTAAGGGCTTCTTTGCGGTGGCTTGGGCTGGGTTGAAGAAAA
AAACGGTGTACTGCTGGATATAAATGACTACTTCGAAGTATACCTTTCGG
CCGGCCTGTGAAATGATGTGCTGCTTCTGCCGCTGCTGCTGCCGTACTAT
GTTGTCGTTTACCCGACAACGTTGATAGGTGGGATCGCATGCCTCGACGC
CCTGGCCATCACCTTGAACGCTGCCGTCGAGCGGGGGCTGTGGTATTCTT
CGACTTCGACGAAGGAGCTGCAGATGGTATGCCTTGACCTGTGCGTGGCT
TGTCGGTCCTCATGGAACATCTCGACCATGCACGTCGTGGTCACAGCCAC
AACATCTCGCCACCTGTGGCTCCATGGTGGGCAAGATGACGACGGAAAGA
AGAGACATGACGCACTGAGGGTGCCGCGCTTGCCCGTACGCGCCGTGACG
GTGTCGAAATGGCCAAAGCGTGTTCTACCGTGCCCTCCAAACAGGGAACG
CCCATTGAGTCACATTCGGCGGGTGCTTCGGCGTGGGTCAAATCGGCTTG
GGTGGGGCCCACGGTGGTGGCCCGAGACCCTGGAGGAAGTTAGATTCGGG
GACGAGTTCAACAGACCTGTCAACGATTTGGTGTGGCCGGCCTCACTGCA
GCAGCTGTCGTTCGGGTATCTGTTCAACCAGCCCATTGCCGGAGTTGTGT
GGCCGGCCTCGCTGCAGCAGCTATCCTTCGGACACAGCTTCAACCAGTAC
TTTACCGGCGTGAAGTGGCCGGCTTCGCTGCAGCCGCTGTCCTTTGGACG
TGGCTTCAACCAGCACATCGCCAGGGTTGCGTGGCCGGCCTCTCTGCAAC
TGCTCTCGTTTGATAACAGCTTCAATCAGCCGGTCAACGATGTGATGTGG
CTGACTTCTCTGCAGACACTATCGCTCAGGCATCGATTCAACCGCCCCCT
GCAGGAGTAG CGTGGCCGCCCTCCCTGCAGAGGCTATCGCTCGGGCATCG
GTTCAACCAACCCCTGACCGGAGTTGAGTGGCCGGCTTCACTGCGACAGC
TATTGCTGGGGGAGCATTTTAAGGAGCCCGTCGTCGGAGTTGTGTGGCCG
GCGTCTCTACAGGACCTATCGTTCGGAAGTGGGTTCAACCACCCTATTTC
CAGGGTTGAGTGGCCGGCTTCGCTGCGACAGCTACGTTTTGGCTGTTTTT
TCAACCAGCCCATCGCCGAAGTTGTGTGGCCGTCGTCTCTACAAGGATCT
ATCGTCTGGGCGATGCTTCAACCAGCCCATCGCCAGAGTCGTGAGGCCAG
CCTCCCTGCAACAGCTGTCGTTCGGGAATACGCTGTATCAATCCTTTGTG
GGGGTTGTGTGGCCGGCCTCTCTGCAGCAGTTGTCGCTCGGAAATGAGTT
CCAACAGCCCATCACTCGAGTTTCATGGCCAGCCTCGCTTCCGTGGCTGG
TTGTAAGGGGCCAGCGAAGGGGCATCCGACGGGAAACAGTGCGCCAGCCC
ATCGCTGAAGGAGTGGTATGGACGGCCTCCGCCCGACGACTGTCGTTCGG
GCCTTGTTTTAACGAGCCCGTGCTCGCGGTTGTCTAGCGCACGTCTTTGC
GAGAGCTGTCATTCGGGCGAGATTTCAACCAGCCCATCGCTGAAGTTGTG
TGGCCGCCGCCTCTACAACGGCTGACGTTCGGATTTGGGTTCAACCAGCC
CGTCCGTCGTGTGGCCGTCTTCCCTCCAAGATATTTATTTCGGGGCTCGC
TTCAACCAGTGTCTGTTCGGAGTTGGATGGCCGAGTTCCTTGCAGAGGTT
GTCGTTTGGGGGGTGCTTCGACCGGCCCCTCGCACGGGTTGAGTGGGCAG
CGTCGCTGCGGCGGCTTTCCTTTGGGAAAATGTTCAATCACCCTACCGCC
GGAGTCTTGTGGCCATGCTCTCTCGAGCAGCTGCCGTTCGGGATGCGCTT
TAACTAGCCCATCCTCGGGGTCACATGGCTGGCTTCCCGAGAGTTGAGGT
TTGGGTTATGCTTCAACCAGCCCATCGCCAAAGTGGTTTGGCCAGAGTCC
CTGCTGCAGCTGTCGTTTGGGGATTGGTTCAATCAGCCCATCACGTGGCC
GGGCGCTCTCCAGGATATGGCATTCGGGCAAAGTTTCAGCGCCCTCTTGT
CGGCGTTGTATGGCCGCGAGTCCTCGAGCGGCTGACGGTCGGGTGCGACT
TCAACGATCCAATCGCAGGAGTGTTGTGGCCGTGCGGTCTCGAGCAGCTC
TCCTTCGGGAGACACTTTTGATCAGTGCATCACTGGGGTTGTTTGGCCAG
CGTCGCTGCGGTTGTTGACGATCGGGGGTGAGGCACGCATTTGGCGCATC
ACGTAGGGCTGCCCGAGCGCCGACCATGAATAGTACCTGGCGGCCACACC
GGAGATCCGCTAAGAATATTGCGCGCCGGGCAGGAGCTGAATAAAGAGGC
TCGTGCTTTTAATTTGCTTAAAGGGCGAATACCGATTTCCCTAGGATAGT
TTTGGTTGATTGGACTGCAAACATAAGTGTATGACCGATGTTGATCTCTA
GAGGAGTGTTTTGGCGGGACGGGAGGCAGGCATCATCGGAACTGACTGCT
GCCGGCCGCTTCGCTGCCTGCCGTGGCATGAAAACTGGCATAGTAGTTGT
GCGCGTGAAGCGTGGATGGTGACGATGATTACATCAAAATACCGAAATGT
GCATATGGATGATGATGACGGTGATGGTTATGATGGTGATTGTATCAAAA
TACCGAAACATGGATTCGGATGACGATGATGGCGATGATGATGATATAAA
CCCCCG back to top Coding sequence (CDS) from alignment at C-linearis_contig10:922112..925817-
>mRNA_C-linearis_contig10.463.1 ID=mRNA_C-linearis_contig10.463.1|Name=mRNA_C-linearis_contig10.463.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1614bp|location=Sequence derived from alignment at C-linearis_contig10:922112..925817- (Chordaria linearis ClinC8C monoicous) back to top