mRNA_C-linearis_contig10.457.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig10.457.1 vs. uniprot
Match: A0A6H5JU73_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU73_9PHAE) HSP 1 Score: 380 bits (977), Expect = 8.580e-123 Identity = 192/266 (72.18%), Postives = 221/266 (83.08%), Query Frame = 3 Query: 84 PLSTCRMPQLAHFMQNFENEEGGLFRAMVRRWLKWMDMHQHLPYSMARLACSSFYEGKWAGSEGAFEHAVGQEFARALLLVLWPDLYENAEWTGWEKEHTFLEILRDDLSEAATTEGKDKLTFGMFSKLNASDSEFREEVERFALSAKEKKEVVSDVDVENSTPRVPGFDMIWTFPLLYEWACHAVCFAPIHHQLVESVLSTYDTYVRAP*NIIDSREIDLVRLGQFRSRESRRVQRLDASSEEIRDAGDKAIAVARALKMSASHA 881 P+ C M QLAHFM+NF+NE+ GLFR M+ RW KWMDMHQHLPYSMARLACSSF+EGKWAGSE A EHAVGQE+ARA LL LWP+L E AEW GW++EH +LEILRDDLSEA TTE KD+LTFGMFSKLNAS +EFR EVER++LSA+EKKE+V D D E+ PRV GFDMIW+FPLLYEWA HA+ FAPIH QLV+SV STYDT + DSREI +VRLGQFRS +SRRVQRL A+++EIR+AGDK IAVAR LK SA+ A Sbjct: 470 PVPYCPMLQLAHFMRNFQNEKSGLFREMIARWTKWMDMHQHLPYSMARLACSSFFEGKWAGSEKAIEHAVGQEYARASLLALWPELNEGAEWVGWDEEHEYLEILRDDLSEAETTEEKDELTFGMFSKLNAS-AEFRGEVERYSLSAREKKEIVVDDDAESQAPRVSGFDMIWSFPLLYEWARHAILFAPIHQQLVKSVCSTYDTCTQKH----DSREIGIVRLGQFRSSQSRRVQRLHATNKEIREAGDKVIAVARELKKSAAQA 730
BLAST of mRNA_C-linearis_contig10.457.1 vs. uniprot
Match: A0A6H5JSZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSZ3_9PHAE) HSP 1 Score: 358 bits (919), Expect = 7.760e-121 Identity = 181/239 (75.73%), Postives = 202/239 (84.52%), Query Frame = 3 Query: 165 MVRRWLKWMDMHQHLPYSMARLACSSFYEGKWAGSEGAFEHAVGQEFARALLLVLWPDLYENAEWTGWEKEHTFLEILRDDLSEAATTEGKDKLTFGMFSKLNASDSEFREEVERFALSAKEKKEVVSDVDVENSTPRVPGFDMIWTFPLLYEWACHAVCFAPIHHQLVESVLSTYDTYVRAP*NIIDSREIDLVRLGQFRSRESRRVQRLDASSEEIRDAGDKAIAVARALKMSASHA 881 M+ RW WMDMHQHLPYSMARLACSSF+EGKWAGSE AFEHAVGQE+ARA LL LWP+LYE AEW GW++EH +LEILRDDLSEA TTE KD+LTFGMFSKLNAS +EFR EVER+ALSA+EKKE+V D D EN PRV GFDMIW+FPLLYEWACHA+ FAPIH QLVES ST+DT + DSREID+VRLGQFRS SRRVQRL A+++EIR AGDKAIAVAR LK SA+HA Sbjct: 1 MIARWTIWMDMHQHLPYSMARLACSSFFEGKWAGSEKAFEHAVGQEYARASLLALWPELYEGAEWVGWDEEHEYLEILRDDLSEAETTEEKDELTFGMFSKLNAS-AEFRGEVERYALSAREKKEIVVDDDAENQAPRVSGFDMIWSFPLLYEWACHAILFAPIHQQLVESDFSTFDTCTQKH----DSREIDIVRLGQFRSSHSRRVQRLYATNKEIRQAGDKAIAVARELKKSAAHA 234
BLAST of mRNA_C-linearis_contig10.457.1 vs. uniprot
Match: A0A6H5JN38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN38_9PHAE) HSP 1 Score: 285 bits (730), Expect = 7.240e-90 Identity = 154/222 (69.37%), Postives = 171/222 (77.03%), Query Frame = 3 Query: 216 SMARLACSSFYEGKWAGSEGAFEHAVGQEFARALLLVLWPDLYENAEWTGWEKEHTFLEILRDDLSEAATTEGKDKLTFGMFSKLNASDSEFREEVERFALSAKEKKEVVSDVDVENSTPRVPGFDMIWTFPLLYEWACHAVCFAPIHHQLVESVLSTYDTYVRAP*NIIDSREIDLVRLGQFRSRESRRVQRLDASSEEIRDAGDKAIAVARALKMSASHA 881 SM RLACSSFYEGKWAGSE FEHAVGQE ARALLL WP+ YE+ EW GWE+++TF E +KLT GMFSKL AS +EFREE+ER+A SA EKK+VVSDVDVEN TPRV GFDMIWTFP LYEWACHAV FAPIH QLVES STYDT + DSRE+D+VRLGQF SR SRRV+RLD+S++EIRD GDKAIAVA LK SASHA Sbjct: 164 SMTRLACSSFYEGKWAGSEEGFEHAVGQEVARALLLAFWPNRYESTEWKGWEEQNTFRE---------------NKLTLGMFSKLAAS-AEFREELERYAASAHEKKKVVSDVDVENQTPRVSGFDMIWTFPQLYEWACHAVFFAPIHQQLVESSSSTYDTGTQKH----DSRELDIVRLGQFSSRGSRRVERLDSSNQEIRDEGDKAIAVATVLKKSASHA 365
BLAST of mRNA_C-linearis_contig10.457.1 vs. uniprot
Match: D7FXZ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXZ1_ECTSI) HSP 1 Score: 250 bits (639), Expect = 3.810e-78 Identity = 139/233 (59.66%), Postives = 170/233 (72.96%), Query Frame = 3 Query: 189 MDMHQHLP-YSMARLACSSFYEGKWAGSEGAFEHAVGQEFARALLLVLWPDLYENAEWTGWEKEHTFLEILRDDLSEAATTEGKDKLTFGMFSKLNASDSEFREEVERFALSAKEKKEVVSD-VDVENSTPRVPGFDMIWTFPLLYEWACHAVCFAPIHHQLVESVLSTYDTYVRAP*NIIDSREIDLVRLGQFRSRESRRVQRLDASSEEIRDAGDKAIAVARALKMSASHA 881 MD H P +++ YEGKWAG++ A EHAVG+EFARALL+ LWP+ E+AEW W++EH L IL DLSEA T KDKLTFGM+++LN S +EFR+EVE +A SA EKKEVVSD +DV+N PRV F MIW FPLLYEWA HA+ A IH QLV SV S YDT + DSREID+VRLGQFRS +SRR+++L AS+ EIR+AG+KAIA ARAL+ +AS A Sbjct: 1 MDRHASAPPLQHGQVSLQLLYEGKWAGADKANEHAVGKEFARALLVALWPEKNESAEWREWQEEHDILGILEGDLSEATTPGEKDKLTFGMYTELNES-AEFRKEVEVYAASAHEKKEVVSDDLDVDNPPPRVSAFGMIWNFPLLYEWARHAIFLAVIHEQLVGSVFSKYDTCTQQH----DSREIDIVRLGQFRSAQSRRIRKLHASNHEIREAGNKAIAEARALRKAASEA 228
BLAST of mRNA_C-linearis_contig10.457.1 vs. uniprot
Match: D7FIQ1_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIQ1_ECTSI) HSP 1 Score: 167 bits (423), Expect = 7.950e-44 Identity = 105/255 (41.18%), Postives = 143/255 (56.08%), Query Frame = 3 Query: 120 FMQNFENEEGGLFRAMVRRWLKWMDMHQHLPYSMARLACSSFYEGKWAGSEGAFEHAVGQEFARALLLVLWPDLYENAEWTGWEKEHTFLEILRDDLSEAATTEGKDKLTFGMFSKLNASDSEFREEVERFALSAKEKKEVVSDVDVENSTPR-VPGFDMIWTFPLLYEWACHAVCFAPIHHQLVESVLSTYDTYVRAP*NIIDSREIDLVRLGQFRSRESRRVQRLDASSEEIRDAGDKAIAVARALKMSASHA 881 FM NF +E+ G F +RW+KWM+ HQ LP SMAR+ C SF+ EGA E AVG EFARA L V W LYE T E+E + L DL KD+LTFG+FS+++ SD R E+E++A S D +V+ P+ ++ FPLLY+ CH F PIH QL+E+ S +D+ + D E+D+VR+G ++S ESR + DA+ E+IR AG K + AR K + SHA Sbjct: 212 FMTNF-SEDKGFFAEFKQRWIKWMERHQQLPLSMARIGCPSFFARTGIMGEGAVEQAVGPEFARAFLHVAWSALYEGEPRT--EREREYRTQLVKDLGGTTDARRKDELTFGLFSRID-SDRSVRNELEQYANSG------WGDKEVDQGAPKGTSALARLFDFPLLYKLVCHRFYFVPIHQQLIEAFFSKFDSCAQKT----DMAEMDIVRVGGWKSAESRDIVCADATGEKIRAAGKKVLEKAREAK-AVSHA 451
BLAST of mRNA_C-linearis_contig10.457.1 vs. uniprot
Match: A0A6H5JI13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI13_9PHAE) HSP 1 Score: 143 bits (361), Expect = 3.320e-35 Identity = 97/251 (38.65%), Postives = 131/251 (52.19%), Query Frame = 3 Query: 135 ENEEGGLFRA-MVRRWLKWMDMHQHLPYSMARLACSSFYEGKWAGSEGAFEHAVGQEFARALLLVLWPDLYENAEWTGWEKEHTFLEILRDDLSEAATTEGKDKLTFGMFSKLNASDSEFREEVERFALSAKEKKEVVSDVDVENSTPR-VPGFDMIWTFPLLYEWACHAVCFAPIHHQLVESVLSTYDTYVRAP*NIIDSREIDLVRLGQFRSRESRRVQRLDASSEEIRDAGDKAIAVARALKMSASHA 881 E + G F A +RW+K M HQ LP SMAR+ C SFY GA E AVG EFARA V WP LYE T E+E + L DL KD+LT G+FS ++ D R E+E++A S D +++ S P+ ++ PLLY CH F PIH QL+E+ S YD+ + D E+D+VR+G ++S ESR + +DA ++IR AG K + A K + SHA Sbjct: 216 ELQRGQFFIAEFKKRWIKSMQRHQELPLSMARIGCPSFYARTGIMGGGAVEQAVGPEFARAFPHVAWPGLYEGEPRT--ERERQYRTQLAKDLGGTTEARRKDELTLGLFSCIDG-DLSVRSELEQYANSG------WGDKEIDESAPKGTSALARLFDLPLLYRLVCHRFYFVPIHQQLIEAFFSKYDSCAKKT----DMAEMDVVRVGGWKSAESRDIVCVDAIDDQIRGAGKKVLKEATEAK-AISHA 452
BLAST of mRNA_C-linearis_contig10.457.1 vs. uniprot
Match: A0A6H5KR45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR45_9PHAE) HSP 1 Score: 133 bits (334), Expect = 4.790e-32 Identity = 87/218 (39.91%), Postives = 117/218 (53.67%), Query Frame = 3 Query: 117 HFMQNFENEEGGLFRAMVRRWLKWMDMHQHLPYSMARLACSSFYEGKWAGSEGAFEHAVGQEFARALLLVLWPDLYENAEWTGWEKEHTFLEILRDDLSEAATTEGKDKLTFGMFSKLNASDSEFREEVERFALSAKEKKEVVSDVDVENSTPRVPGFDMIWTFPLLYEWACHAVCFAPIHHQLVESVLSTYDTYVRAP*NIIDSREIDLVRLGQFRS 770 HFM NF +E+ F RW KWM HQ LP SMAR+ C SFY +GA E AVG E+ARA L V WP+ YE + E+E + L +D KD+LTFG+FS + D+E R EVE +A S KEV + + + +T V F+ FP LY++ C F PIH QL+E+ S YDT + D +D VR+G +++ Sbjct: 162 HFMVNF-SEDSFFFAEFNMRWKKWMQRHQELPLSMARIGCPSFYARMGIMGKGAVEQAVGPEYARAFLHVGWPERYEGEPRS--EREREYRVQLGEDFGGVIDARRKDELTFGLFSIVE-EDAEMRCEVEGYAESGFGDKEVDEEAE-KGTTALVRLFEK---FPRLYKFVCVRFYFVPIHQQLIEAFFSKYDTCAKKT----DVAVMDSVRVGSWQT 367
BLAST of mRNA_C-linearis_contig10.457.1 vs. uniprot
Match: A0A6H5JMW8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMW8_9PHAE) HSP 1 Score: 130 bits (327), Expect = 9.230e-31 Identity = 82/199 (41.21%), Postives = 104/199 (52.26%), Query Frame = 3 Query: 90 STCRMPQLAHFMQNFENEEGGLFRAMVRRWLKWMDMHQHLPYSMARLACSSFYEGKWAGSEGAFEHAVGQEFARALLLVLWPDLYENAEWTGWEKEHTFLEILRDDLSEAATTEGKDKLTFGMFSKLNASDSEFREEVERFALSAKEKKEVVSDVDVENSTPRVPGFDMIWTFPLLYEWACHAVCFAPIHHQLVESVLS 686 +T P + FM F +E+ F +RW+KWM HQ LP SMAR+ C SFY GA E AVG EFARA L V WP LYE T E+E + L DL KD+LTFG+FS ++ D R E+E++A S KE+ D ST + + FPLLY+ CH F PIH QL+E+ S Sbjct: 128 ATLSDPMVKFFMLAF-SEDRVFFAEFKKRWIKWMQRHQELPLSMARIGCPSFYARTGIMGGGAVEQAVGPEFARAFLHVAWPGLYEGEPRT--EREREYRTQLVKDLGGTTEARRKDELTFGLFSCIDG-DLSVRSELEQYANSGWGNKEI--DESAPKSTSELAR---LLDFPLLYQLVCHRFYFVPIHQQLIEAFFS 317
BLAST of mRNA_C-linearis_contig10.457.1 vs. uniprot
Match: A0A6H5JQF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQF6_9PHAE) HSP 1 Score: 125 bits (315), Expect = 1.940e-29 Identity = 73/177 (41.24%), Postives = 97/177 (54.80%), Query Frame = 3 Query: 138 NEEGGLFRAMVRRWLKWMDMHQHLPYSMARLACSSFYEGKWAGSEGAFEHAVGQEFARALLLVLWPDLYENAEWTGWEKEHTFLEILRDDLSEAATTEGKDKLTFGMFSKLNASDSEFREEVERFALSAKEKKEVVSDVDVENSTPR-VPGFDMIWTFPLLYEWACHAVCFAPIHHQ 665 +E+ G F +RW+KWM+ HQ LP SMAR+ C SFY +EGA E AVG +FARA L V WP LY+ T E+E F L E KD+LTFG+FS ++ SD R E+E++A S SD +V+ P+ ++ +PLLY+ CH F PIH Q Sbjct: 131 SEDKGFFALFKKRWIKWMERHQQLPLSMARIGCPSFYARTGIMAEGAVEQAVGPKFARAFLHVAWPGLYDGEPRT--EREREFRTQLVKYSGEITEARRKDELTFGLFSCID-SDLSVRNELEQYANSG------WSDKEVDQGAPKGTSALACLFDYPLLYKLVCHRFYFVPIHQQ 298
BLAST of mRNA_C-linearis_contig10.457.1 vs. uniprot
Match: A0A6H5L8G1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8G1_9PHAE) HSP 1 Score: 78.6 bits (192), Expect = 6.200e-13 Identity = 42/87 (48.28%), Postives = 51/87 (58.62%), Query Frame = 3 Query: 90 STCRMPQLAHFMQNFENEEGGLFRAMVRRWLKWMDMHQHLPYSMARLACSSFYEGKWAGSEGAFEHAVGQEFARALLLVLWPDLYEN 350 +T P FM NF +E+ F +RW+KWM+ HQ LP SMAR+AC SFY ++GA E G EFARA L V WP LYE Sbjct: 162 TTLSEPMEKLFMTNF-SEDKVFFAEFKKRWIKWMERHQQLPLSMARIACPSFYARTGIMADGAVE---GPEFARAFLHVAWPGLYEG 244 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.457.1 >prot_C-linearis_contig10.457.1 ID=prot_C-linearis_contig10.457.1|Name=mRNA_C-linearis_contig10.457.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=205bp MPQLAHFMQNFENEEGGLFRAMVRRWLKWMDMHQHLPYSMARLACSSFYEback to top mRNA from alignment at C-linearis_contig10:844152..845233+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.457.1 ID=mRNA_C-linearis_contig10.457.1|Name=mRNA_C-linearis_contig10.457.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1082bp|location=Sequence derived from alignment at C-linearis_contig10:844152..845233+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:844152..845233+ >mRNA_C-linearis_contig10.457.1 ID=mRNA_C-linearis_contig10.457.1|Name=mRNA_C-linearis_contig10.457.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1230bp|location=Sequence derived from alignment at C-linearis_contig10:844152..845233+ (Chordaria linearis ClinC8C monoicous)back to top |