mRNA_C-linearis_contig10.452.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig10.452.1 vs. uniprot
Match: D7FH76_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH76_ECTSI) HSP 1 Score: 283 bits (723), Expect = 2.910e-78 Identity = 184/317 (58.04%), Postives = 232/317 (73.19%), Query Frame = 3 Query: 9 TRPLTTAENEVQSAALRHALLLEERGLQLERAVVQLRQKEEEENLLKSELRRLGEASVADREAWKRLAEAEGEVSLLRQRSEGLEDLAKRCQASLEAERQGRRQDHEKHVSELQRAAGEAASAAQAASREGLAATSSRDLCEQMSGVCRQMRQAAEEAGARRAEAEETARSLQARLALADVATKDAERELEGLGGQLHTAEQQQRREENLLRDKLEAVNRESRQISQALKDENEANFALRGLLKDQEGRLEKAERHAAASSQGSDRSKEVSEKLRRELERSQREAEQLRSRLQVSGGLAADEAGRAKEALEAERSVR 959
T ++ AENEVQ+ ALRHALLLEERGLQLERA LR+KEEEE LLK EL RLGEASVADR+AW+RLA+AEGE+S L +RSE LEDLAK CQA+LE E++ RR+D ++H SEL RA G+AA+AA+AASRE AA +SR+LCEQMS VC QMR+AAEEAGAR A AEET RSL+ ++L +VA K+AERE+ L G+ ++Q++QALKDE + +LRG L D+E L++AER AA+ + S+R +EVSE LR L+RSQ EAE+LR+RL+ + LAADEAG+AKE+ AE R
Sbjct: 309 TGRMSAAENEVQNTALRHALLLEERGLQLERAEALLRRKEEEEGLLKRELNRLGEASVADRDAWRRLAKAEGEISSLLERSEALEDLAKDCQAALEKEQRARREDQDRHASELSRATGDAATAAEAASREEAAAEASRNLCEQMSAVCGQMRKAAEEAGARSASAEETVRSLRDDVSLMEVAAKEAEREMALLRGKXXXXXXXXXXXXXXXXXXXXXXXXXAKQMAQALKDEKDTTNSLRGFLADREASLDRAERELAAARETSERGEEVSEGLRSALQRSQGEAERLRARLETAVELAADEAGKAKESSRAEELSR 625
BLAST of mRNA_C-linearis_contig10.452.1 vs. uniprot
Match: D7G2T2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T2_ECTSI) HSP 1 Score: 235 bits (599), Expect = 3.940e-61 Identity = 219/538 (40.71%), Postives = 277/538 (51.49%), Query Frame = 3 Query: 1788 RRIDGARELRSWVEREVERARDAATEGLHDLRGRWDSELTRLQSAERKLLHLQEQAKYGGRRAALDAREECYAKIERVEKEKWGLRDCLAAEKRQSELLEGTAARLGEQLSVLS-----------GQLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVTRVSALAKALDAEREEREKER-ADRQQEEERVSRDQEAAVLRVSELLEDERVARDEGTSRLTAXXXXXXXXXXXXXXXXXXXXXXVRETQGLLGEMSPGSDRVAGG---LGTPEPRTSRRTGREQRPAPGGASALELQSSRLERLVADAAALVKHTGRFYDRYSKTHKKEN--PSGEREIPRPIPGN---VLGKGEGGGFCRNCGTAAGSSNP--------RPSAKPAFPQGYQQSLGVTASSPTYHGSGSFAPTATATTSPYSQTWRGEEERSGKFLARTVEHGATAAAAVGKNGGTALRELDRQCYSLLESNAQLCLKLQGLGLEYAGLTRVLLATGG-EH 3314
RR+DGAR LR+WV +VE A A EGL ++RGRW++EL RLQ+AERKL+ LQEQAKYGGRRAALDAREECYAKIERVE+EKW LRD L +E+R+ E+L RL + + +LE XXXXXXXXX +V V + + +E + R +R+ EE+R S EAA R++ LLE+ER AR E + A VRETQGLLGEMSP AG G+ R S G + +SAL LQ+S+LER+VA+A+ L++ TG FYDRYS+THK +G+ E +PG+ + G G +N G A G+ SA+ A ++S G SP G F+P + Q WRG E+ S FL RT+EH G ALRELDR CYSLLESNAQLCL++QGLGLEYAGLTR L+A+GG EH
Sbjct: 189 RRVDGARGLRAWVTGKVENAGGDAMEGLREIRGRWEAELGRLQAAERKLVRLQEQAKYGGRRAALDAREECYAKIERVEQEKWALRDSLVSEEREVEVLRAHLKRLKDATDKAAVSAESDYRAACHELEAERGHRQRLQDKTELLEGKASXXXXXXXXXSEQIDRYKTEALQQQQDKDRLLRSQETLQSQLKEEVQSVEKARREFLSNSQEISRGRDKERELEEQRDSAAAEAA--RLTCLLEEERRARREENAMGEAVLRE------------------VRETQGLLGEMSPHRGDPAGTGPFRGSVLERGSSSDGDDP------SSALGLQASKLERIVAEASDLIRRTGHFYDRYSETHKNAGGEKNGDDEASEKLPGSNSGLPGNDATAGRYQNRGAATGAGQSDRYEGRHRAASAEAAI----ERSFGANGRSPGDPPPGVFSPQQPPAGGGH-QPWRGRED-SWNFLDRTLEHRHWV------ETGPALRELDRACYSLLESNAQLCLRIQGLGLEYAGLTRELMASGGGEH 688
BLAST of mRNA_C-linearis_contig10.452.1 vs. uniprot
Match: A0A6H5K0W7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0W7_9PHAE) HSP 1 Score: 155 bits (393), Expect = 7.080e-36 Identity = 152/405 (37.53%), Postives = 205/405 (50.62%), Query Frame = 3 Query: 291 LEAERQGRRQDHEKHVSELQRAAGEAASAAQAASREGLAATSSRDLCEQMSGVCRQMRQAAEEAGARRAEAEETARSLQARLALADVATKDAERELEGLGGQLHTAEQQQRREENLLRDKLEAVNRESRQISQAL--------------------KDENEANF-------------------ALRGLLKDQEGRLEKAERHA-------AASSQGSDRSK---------EVSEKLRRELERSQREAEQLRSRLQVSGGLAADEAGRAKEALEAERSVRSDLASAAXXXXXXXXXXXXXXXXXXXXXXXXXXXSTDLSETTKLSQDRLVDSEVYCRAAAAAGRRSESLERRSAEATRAAEAAQSVTVRSEAAHAQVERSLAGFQASVARALGAVEDALVDTLSGVG 1340
+ E++ RR+D ++H SEL RA G+AA+AA+ ASRE AA +SRDLCEQMS VC QMR+AAEEAGAR A AEET RSLQ L+L +VA K+AERE+ L G+ +E++Q++QA K ++A+F L + +EG + +E + +S +G S+ EVSE LR L+RSQ E E+LR+RL+ + GLAADEAG+AKE+ AE RS LA + S +L ++KLSQDRL+ EV RAAA A RRS++L+ + R+EAA + ER+L FQ S+ RAL VEDAL D L G+G
Sbjct: 1 MHQEQRARREDQDRHASELSRATGDAAAAAEVASREECAAKASRDLCEQMSAVCGQMRKAAEEAGARSASAEETVRSLQGDLSLMEVAAKEAEREMALLRGKXXXXXXXXXXXXXXXXXXXXXXGQEAKQMAQASFLMILLLLLFLEKSSQKAHKKKIDDAHFFGHVPRLFQTKLLCSFSSVTLSTGSQRREGHDQFSEGFSRGQGGQPGSSGEGVGGSEGKLCTGMGEEVSEGLRAALQRSQGETERLRARLETAVGLAADEAGKAKESSRAEELSRSQLAVSGEREENLQSENASLRNENEGLRRTLASLSAELEASSKLSQDRLIKCEVSARAAAEAERRSDALKXXXXXXXXXXXXXXXLXXRAEAARDERERALGEFQGSMTRALQDVEDALADALQGIG 405
BLAST of mRNA_C-linearis_contig10.452.1 vs. uniprot
Match: A0A6H5K601_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K601_9PHAE) HSP 1 Score: 131 bits (330), Expect = 8.940e-30 Identity = 94/198 (47.47%), Postives = 119/198 (60.10%), Query Frame = 3 Query: 2739 QSSRLERLVADAAALVKHTGRFYDRYSKTHKKE--NPSGEREIPRPIPG---NVLGKGEGGGFCRNCG--TAAGSSNPRPSAKPAFPQG--YQQSLGVTASSPTYHGSGSFAPTATATTSPYSQTWRGEEERSGKFLARTVEHGATAAAAVGKNGGTALRELDRQCYSLLESNAQLCLKLQGLGLEYAGLTRVLLATG 3305
Q+S+LER+VA+A+ L++ TG FYDRYS+THK + +G+ + IPG ++LG G +N G TAAG S+ A G ++S G SSP G F+P + Q WRG E+ SG L RT+EH G G ALRELDR CYSLLESNAQLCL+LQGLGLEYAGL+R LLA+G
Sbjct: 7 QASKLERIVAEASDLIRQTGHFYDRYSETHKNAGGDKNGDDKASEKIPGGNSSLLGNDATAGRHQNRGVATAAGQSDRCEGRHRAASAGAAMERSFGANGSSPGNPPPGVFSPQQLSAGGH--QPWRGRED-SGNCLDRTLEHRH------GVGAGPALRELDRACYSLLESNAQLCLRLQGLGLEYAGLSRQLLASG 195
BLAST of mRNA_C-linearis_contig10.452.1 vs. uniprot
Match: A0A6H5K6B9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6B9_9PHAE) HSP 1 Score: 121 bits (303), Expect = 1.700e-25 Identity = 68/96 (70.83%), Postives = 80/96 (83.33%), Query Frame = 3 Query: 9 TRPLTTAENEVQSAALRHALLLEERGLQLERAVVQLRQKEEEENLLKSELRRLGEASVADREAWKRLAEAEGEVSLLRQRSEGLEDLAKRCQASLE 296
T ++ AENEVQ+ ALRHA LLEERGLQLERA LR+KEEEE LLK EL RLGEASVADR+AW+RLA+AEGE+S L +RSE LEDLAK C+ +L+
Sbjct: 285 TGRMSAAENEVQNTALRHAFLLEERGLQLERAEALLRRKEEEEGLLKRELHRLGEASVADRDAWRRLAKAEGEISSLLKRSEALEDLAKDCRVALD 380 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.452.1 >prot_C-linearis_contig10.452.1 ID=prot_C-linearis_contig10.452.1|Name=mRNA_C-linearis_contig10.452.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1029bp MSGVCRQMRQAAEEAGARRAEAEETARSLQARLALADVATKDAERELEGLback to top mRNA from alignment at C-linearis_contig10:430623..445227+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.452.1 ID=mRNA_C-linearis_contig10.452.1|Name=mRNA_C-linearis_contig10.452.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=14605bp|location=Sequence derived from alignment at C-linearis_contig10:430623..445227+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:430623..445227+ >mRNA_C-linearis_contig10.452.1 ID=mRNA_C-linearis_contig10.452.1|Name=mRNA_C-linearis_contig10.452.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=6174bp|location=Sequence derived from alignment at C-linearis_contig10:430623..445227+ (Chordaria linearis ClinC8C monoicous)back to top |