mRNA_C-linearis_contig10.450.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig10.450.1 vs. uniprot
Match: A0A6H5JA60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA60_9PHAE) HSP 1 Score: 336 bits (862), Expect = 3.130e-99 Identity = 179/379 (47.23%), Postives = 242/379 (63.85%), Query Frame = 3 Query: 2061 DLFVRTT-EECHERWASWPVIQEEGLATGNVLLFRVFNSIGNLFIVMEHIVQLAMMLEVAVVLDCEKFPGFRVAFDPATIKWDVDPTVIMQLLDRAANQDPNARFHQHVLKYRDGLLLLSDSRLLLLATKLNLVGASLSETVTAVRGADFPNLRNLAPVVIEGSL-QPDPCAWNLFLRRSPSMIQSMVAQSPWVAADGVPQDDVHPTKYVAWHIRTSDGETMHSFNPERHRYIFHGQSSESVFPVFLAATKGGEDQCPSAFPGGEHDTPIYISSNSKEMARNCSSGVAEQGVVPGLIDLGLVGNDGHTAYSKNPTAAAVGAFIDYLYLMDADIIVRSGSSFSGTVVKIKGMGCRQAL--PGVGVSASGPGLVVCLPSSC 3185
D FV TT ++CH W SWP +QE +A G VL+F +F S+GNLFI + ++++ A +LEVA+ L +KFPGFR AFD A+IKWD+DPT ++Q + R + LK+ DG L+LS +L LA + + SL+E AV+ + +LR L+ + ++ P+ CAWN+ LRRSPSMI S+ A +PW + P+ P YVAWH+RTSDGE+ HSFNP+ H YI HGQSS +V P+FL+AT E CP F P+YISSNSK MARNC++ AE V G +DLG+ D HT +SKNP A A+ AFIDYLYLMD+ +I+++GSSFS TV ++K + CR+ P + V L VCLP C
Sbjct: 184 DRFVHTTGDDCHPLWTSWPAVQEAAIANGTVLVFDIFPSVGNLFITLGNLIKTARLLEVALFLKWDKFPGFRAAFDTASIKWDLDPTTVVQKAEELTLGAEVDRLYP--LKFSDGNLVLSSQQLEALAIQTGIPDTSLAEMAVAVKER-WSSLRRLSQAIAGSAVVPPETCAWNMLLRRSPSMIASLEAHNPWTPSGFGPR----PKDYVAWHVRTSDGESEHSFNPDVHTYILHGQSSTTVVPIFLSATDAAEKMCPKMFHEDAPKMPVYISSNSKSMARNCTALAAEHDVTAGFVDLGIDDLDAHTTFSKNPNATALNAFIDYLYLMDSSVIIQTGSSFSSTVARVKSLKCREVEHPPELPVKR----LNVCLPHDC 551
BLAST of mRNA_C-linearis_contig10.450.1 vs. uniprot
Match: A0A6H5L1Z7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Z7_9PHAE) HSP 1 Score: 312 bits (799), Expect = 1.130e-92 Identity = 172/378 (45.50%), Postives = 234/378 (61.90%), Query Frame = 3 Query: 2076 TTEECHERWASWPVIQEEGLATGNVLLFRVFNSIGNLFIVMEHIVQLAMMLEVAVVLDCEKFPGFRVAFDPATIKWDVD-PTVIMQLLDRAANQDPNARFHQHVLKYRDGLLLLSDSRLLLLATKLNLVGASLSETVTAVRG--ADFPNLRNLAPVVIEGS-LQPDPCAWNLFLRRSPSMIQSMVAQSPWVAADGVPQDDVHPTKYVAWHIRTSDGETMHSFNPERHRYIFHGQSSESVFPVFLAATKGGEDQCPSAFPGGEHDTPIYISSNSKEMARNCS----SGVAEQGVVPGLIDLGLVGNDGHTAYSKNPTAAAVGAFIDYLYLMDADIIVRSGSSFSGTVVKIKGMGCRQALPGVGVSASGPGLVVCLPSSC 3185
T ++C W+SWP +QE +A G V++F VF S+GN+F+++ +I++ A +LEVA++L+ ++F GFR AFDPA+IKWD+D PT++ Q R+ + + + DG ++LS +L +A K+ L G S+ E A+ + L L+ ++ PCAWN+ LRRSP+M+ S+ A +PW+ + P+ P KYVAWHIRTS GET SF P H YIFH QSS SV P+FL+AT E CP F TP+YISSNSK MARNC+ + AE V PG +DLG+ D HT +SKNP A A+ AFIDYLYLMD+ IIV++GSSFS TV IKGM C G+ L VCLP+ C
Sbjct: 4 TDDDCDSTWSSWPSVQEAAVARGTVVVFNVFPSVGNMFVILHNIIKTARLLEVALLLNWQRFEGFREAFDPASIKWDLDQPTLVQQAAPRSQGAEAERLYP---FTFPDGQMVLSHWQLETIARKVGLPGTSVDEMAAALEEGYSKIGGLGRLSRETVQNERFSVLPCAWNMLLRRSPAMMASLEAHNPWMTHEFNPR----PKKYVAWHIRTSHGETNGSFTPHVHTYIFHRQSSTSVLPIFLSATDAAERMCPRFFDQDVPITPVYISSNSKTMARNCTVLAATLAAEHKVGPGFVDLGIDDVDAHTTFSKNPKATALNAFIDYLYLMDSSIIVQTGSSFSFTVASIKGMSCHGVAKPEGLPVKN--LNVCLPADC 372
BLAST of mRNA_C-linearis_contig10.450.1 vs. uniprot
Match: A0A6H5JS37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS37_9PHAE) HSP 1 Score: 260 bits (665), Expect = 1.570e-71 Identity = 145/376 (38.56%), Postives = 226/376 (60.11%), Query Frame = 3 Query: 2085 ECHERWASWPVIQEEGLATGNVLLFRVFNSIGNLFIVMEHIVQLAMMLEVAVVLDCEKFPGFRVAFDPATIKWDVDPTVIMQLLDRAANQDPNARFHQHVLKYRDGLLLLSDSRLLLLATKLNLVGASLSETVTAVRGADFPNLRNLAPVVIE----GSLQ-----PDPCAWNLFLRRSPSMIQSMVAQSPWVAADGVPQDDVHPTKYVAWHIRTSDGETMHSFNPERHRYIFHGQSSESVFPVFLAATKGGEDQCPSAFPGGEHDTPIYISSNSKEMARNCSSGVAEQGVVPGLIDLGLVGNDGHTAYSKNPTAAAVGAFIDYLYLMDADIIVRSGSSFSGTVVKIKGMGCRQALPGVGVSASGPGLVVCLPSSC 3185
EC E W +WP +QE +A G V++F + + +GN F+ + +I+Q+A LE+ +V++ + F GFR AFD +KWD+D + + + FH + ++ DG ++L D +L +LA+K VG ++ A L+ + PV I G LQ PC WN+F+RRS +M++ + A +PW +G KY+A+ IRT++GET SF+P+ H YIF+ S V + AAT+ + CP+AF E D P++ISSNS MARNCS+ A + ++PGL+D+G+ D HT +S +P AA+ AF+D+L+++DA+++VR+ SSFSGT V++KGM C +A V + SG L VC+P+ C
Sbjct: 222 ECDELWRTWPAMQESAIANGTVVVFDLVSRVGNAFMDLRNIIQVARWLELGLVINWKGFQGFRDAFDTGELKWDIDTEPFRRRAKEISRGVNPSGFH--LFRFYDGFMVLCDHQLTMLASK---VGIAIQHP-----DAMMLQLKKVFPVKIRYWISGGLQNGLPASQPCTWNMFVRRSAAMMRRLEAYNPW-RVEGSSMSRFQ--KYIAFQIRTTEGETAGSFDPKIHTYIFNNLRSTVVCNWYFAATEEAKGACPAAFNADEGDVPLFISSNSMSMARNCSAEAAGRKMLPGLVDVGVPVGDAHTTFSAHPKIAALKAFVDFLFILDAEVVVRTASSFSGTAVEMKGMNCFEAKVSVEMPISG--LYVCVPAGC 582
BLAST of mRNA_C-linearis_contig10.450.1 vs. uniprot
Match: A0A6H5KDJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ4_9PHAE) HSP 1 Score: 239 bits (611), Expect = 1.890e-67 Identity = 139/321 (43.30%), Postives = 196/321 (61.06%), Query Frame = 3 Query: 2223 MLEVAVVLDCEKFPGFRVAFDPATIKWDVDPTVIMQLLDRAANQDPNARFHQHVLKYRDGLLLLSDSRLLLLATKLNLVGASLSETVTAVRGADFPNLRNLAPVVIEGSLQPDPCAWNLFLRRSPSMIQSMVAQSPWVAADGVPQDDVHPTKYVAWHIRTSDGETMHSFNPERHRYIFHGQSSESVFPVFLAATKGGEDQCPSAFPGGEHDTPIYISSNSKEMARNCSSGVAEQGVVPGLIDLGLVGNDGHTAYSKNPTAAAVGAFIDYLYLMDADIIVRSGSSFSGTVVKIKGMGCRQALPGVGVSASGPGLVVCLPSSC 3185
MLEVA++++ ++FP FRVAF+P IKWD+D T +L ++ +A +H L++ DG L++SD +L +++ VG+ + A F N L P PCAWN+ LRRSP+M+ SM A +PWV A P+ H Y AWHIRTS+GET SF+ +R YIF+ +S+S+ P+F++ + E+ CPS F G +D+P+YISSNSK ARNCS+ ++ + +DLG+ D HTA+SKNP V AFID+LYLMDADIIVR+ SSFSG ++ IK C A G + L VC+P+ C
Sbjct: 1 MLEVALIINLDQFPAFRVAFEPEVIKWDLD-TEPFKLRGGEISKGVDAE-DRHALQFLDGFLIVSDHQLEVMSASFG-VGSGTHSGIKAGFRKAFKNRWRHYLATANLDLAP-PCAWNMVLRRSPTMMNSMEAHTPWVTAGDSPRAHAH---YHAWHIRTSEGETERSFSKQR--YIFNNVASQSICPMFVSTREASEEACPSRFSG--NDSPVYISSNSKSTARNCSAEARKKDIETAFVDLGINAQDAHTAFSKNPDTV-VNAFIDFLYLMDADIIVRTASSFSGAIIDIKSYRCMDAYLGK-LPVFRMHLFVCVPADC 308
BLAST of mRNA_C-linearis_contig10.450.1 vs. uniprot
Match: A0A6H5JUR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUR5_9PHAE) HSP 1 Score: 208 bits (530), Expect = 1.060e-57 Identity = 105/207 (50.72%), Postives = 136/207 (65.70%), Query Frame = 3 Query: 2565 CAWNLFLRRSPSMIQSMVAQSPWVAADGVPQDDVHPTKYVAWHIRTSDGETMHSFNPERHRYIFHGQSSESVFPVFLAATKGGEDQCPSAFPGGEHDTPIYISSNSKEMARNCSSGVAEQGVVPGLIDLGLVGNDGHTAYSKNPTAAAVGAFIDYLYLMDADIIVRSGSSFSGTVVKIKGMGCRQALPGVGVSASGPGLVVCLPSSC 3185
CAWN+ LRRS S++ S+ A +PW A P +YVAWHIRTS+GET SF+P+ H+YIF+GQ+S +VFP+FL+AT E CP + P+YISSNSK M+RNC++ AE + G +DLG+ +D HT YS NP A A+ AFIDYLYLMD+ IIV++GSSF+ TV IKG CR A G L +CLP+ C
Sbjct: 19 CAWNMLLRRSHSIMASLDANNPWTPAGF----GSRPAEYVAWHIRTSNGETKESFSPDVHQYIFNGQTSAAVFPLFLSATSFAEKACPKLYHDNIPIMPVYISSNSKTMSRNCTALAAENKIQSGFVDLGIADSDAHTGYSANPDATALNAFIDYLYLMDSSIIVQTGSSFAFTVASIKGTSCRGAPKTKGAPVRS--LYICLPNDC 219
BLAST of mRNA_C-linearis_contig10.450.1 vs. uniprot
Match: D8LBV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBV4_ECTSI) HSP 1 Score: 162 bits (411), Expect = 1.720e-38 Identity = 101/286 (35.31%), Postives = 160/286 (55.94%), Query Frame = 3 Query: 2085 ECHERWASWPVIQEEGLATGNVLLFRVFNSIGNLFIVMEHIVQLAMMLEVAVVLDCEKFPGFRVAFDPATIKWDVDPTVIMQLLDRAANQDPNARFHQHVLKYRDGLLLLSDSRLLLLATKLNLVGASLSETVTAVRGADFP--NLRNLAPVVIE----GSLQ-----PDPCAWNLFLRRSPSMIQSMVAQSPWVAADGVPQDDVHPTKYVAWHIRTSDGETMHSFNPERHRYIFHGQSSESVFPVFLAATKGGEDQCPSAFPGGEHDTPIYISSNSKEMARNCSS 2909
EC E W +WP +QE +A G V++F + + +GN F+ + +I+Q+A LE+ +V++ + F GFR AFD +KWD+D T + +A ++ N H+ + DG ++L D +L +LA+K+ + A++ D L+ + PV I G LQ PC WN+F++RS SM++S+ +PW +G KYVA+ IRT++GET SF+P+ H YIF+ S V + AT+ + CP+AF E D P++ISSNS + R+ S
Sbjct: 222 ECDELWRTWPAMQESAIANGTVVVFDLVSRVGNAFMDLRNIIQVARWLELGLVVNWKGFQGFRDAFDTGELKWDID-TEPFRRRAKAISRGVNPSGF-HLFWFYDGFMVLCDHQLTMLASKMGI----------AIQHPDAMVLQLKKVFPVKIRYWISGRLQNGLPASQPCTWNMFVKRSASMMRSLEVYNPW-RVEGSSMSRFQ--KYVAFQIRTTEGETAGSFDPKIHTYIFNNLRSTVVCNWYFTATEEAKGVCPAAFNADEGDVPLFISSNSIVLLRHSCS 492
BLAST of mRNA_C-linearis_contig10.450.1 vs. uniprot
Match: D7G5J4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5J4_ECTSI) HSP 1 Score: 111 bits (277), Expect = 1.710e-24 Identity = 54/106 (50.94%), Postives = 72/106 (67.92%), Query Frame = 3 Query: 2562 PCAWNLFLRRSPSMIQSMVAQSPWVAADGVPQDDVHPTKYVAWHIRTSDGETMHSFNPERHRYIFHGQSSESVFPVFLAATKGGEDQCPSAFPGGEHDTPIYISSN 2879
PCAWN+ LRRSP+M+ SM A +PWV P+ H Y AWHIRTS+GET SF+ +R YIF+ +SES+ P+F++ + E+ CPS F G D+P+YISSN
Sbjct: 41 PCAWNMVLRRSPTMMNSMEAHTPWVTVGDSPRTRAH---YHAWHIRTSEGETERSFSKQR--YIFNNVASESICPMFVSTREASEEACPSRFSG--KDSPVYISSN 139 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.450.1 >prot_C-linearis_contig10.450.1 ID=prot_C-linearis_contig10.450.1|Name=mRNA_C-linearis_contig10.450.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=454bp MRQRRTFLLLLAALPAFFGTAAQDSGGDIDLERRAGTDKSLRALRHGTTPback to top mRNA from alignment at C-linearis_contig10:413104..420429+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.450.1 ID=mRNA_C-linearis_contig10.450.1|Name=mRNA_C-linearis_contig10.450.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=7326bp|location=Sequence derived from alignment at C-linearis_contig10:413104..420429+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:413104..420429+ >mRNA_C-linearis_contig10.450.1 ID=mRNA_C-linearis_contig10.450.1|Name=mRNA_C-linearis_contig10.450.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2724bp|location=Sequence derived from alignment at C-linearis_contig10:413104..420429+ (Chordaria linearis ClinC8C monoicous)back to top |