Homology
BLAST of mRNA_C-linearis_contig10.447.1 vs. uniprot
Match:
A0A6H5JP54_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP54_9PHAE)
HSP 1 Score: 90.1 bits (222), Expect = 4.540e-15
Identity = 44/54 (81.48%), Postives = 49/54 (90.74%), Query Frame = 3
Query: 1098 ECFSAHELATLVEIHGYSHEDATRALTICHEMRRLEAAGIGRVEAARELTRRVL 1259
+CFS ELATLVE+HGYS EDA RALTICHEMR+LEAAG+GRV AA+ELTRRVL
Sbjct: 54 DCFSPIELATLVEVHGYSPEDARRALTICHEMRKLEAAGVGRVTAAQELTRRVL 107
BLAST of mRNA_C-linearis_contig10.447.1 vs. uniprot
Match:
D7FH95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH95_ECTSI)
HSP 1 Score: 68.6 bits (166), Expect = 1.270e-10
Identity = 33/43 (76.74%), Postives = 37/43 (86.05%), Query Frame = 3
Query: 1131 VEIHGYSHEDATRALTICHEMRRLEAAGIGRVEAARELTRRVL 1259
+ +HGYS EDA RALTICHEMR LEAAG+G V AA+ELTRRVL
Sbjct: 12 ITVHGYSPEDARRALTICHEMRTLEAAGVGGVAAAQELTRRVL 54
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.447.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 4.54e-15 / Id = 81.48 Expect = 1.27e-10 / Id = 76.74 Sequence A0A6H5JP54_9PHAE D7FH95_ECTSI
Match Name E-value Identity Description
A0A6H5JP54_9PHAE 4.540e-15 81.48 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more] D7FH95_ECTSI 1.270e-10 76.74 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Ec32 ortholog description hypothetical protein Ec32 ortholog Ec-13_004550.1 Exons 5 Model size 2318 Cds size 711 Stop 1 Start 1
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927328.3951328-UTR-C-linearis_contig10:376823..377494 1622927328.3951328-UTR-C-linearis_contig10:376823..377494 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig10 376824..377494 + 1690879629.0352297-UTR-C-linearis_contig10:376823..377494 1690879629.0352297-UTR-C-linearis_contig10:376823..377494 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig10 376824..377494 + 1622927328.4402869-UTR-C-linearis_contig10:382243..382259 1622927328.4402869-UTR-C-linearis_contig10:382243..382259 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig10 382244..382259 + 1690879629.076011-UTR-C-linearis_contig10:382243..382259 1690879629.076011-UTR-C-linearis_contig10:382243..382259 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig10 382244..382259 + 1622927328.4576385-UTR-C-linearis_contig10:383389..383733 1622927328.4576385-UTR-C-linearis_contig10:383389..383733 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig10 383390..383733 + 1690879629.0844371-UTR-C-linearis_contig10:383389..383733 1690879629.0844371-UTR-C-linearis_contig10:383389..383733 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig10 383390..383733 + 1622927328.468007-UTR-C-linearis_contig10:383755..384331 1622927328.468007-UTR-C-linearis_contig10:383755..384331 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig10 383756..384331 + 1690879629.092708-UTR-C-linearis_contig10:383755..384331 1690879629.092708-UTR-C-linearis_contig10:383755..384331 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig10 383756..384331 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927328.403615-CDS-C-linearis_contig10:377494..377677 1622927328.403615-CDS-C-linearis_contig10:377494..377677 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig10 377495..377677 + 1690879629.0449996-CDS-C-linearis_contig10:377494..377677 1690879629.0449996-CDS-C-linearis_contig10:377494..377677 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig10 377495..377677 + 1622927328.4124608-CDS-C-linearis_contig10:380922..381204 1622927328.4124608-CDS-C-linearis_contig10:380922..381204 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig10 380923..381204 + 1690879629.0544543-CDS-C-linearis_contig10:380922..381204 1690879629.0544543-CDS-C-linearis_contig10:380922..381204 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig10 380923..381204 + 1622927328.423763-CDS-C-linearis_contig10:381997..382243 1622927328.423763-CDS-C-linearis_contig10:381997..382243 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig10 381998..382243 + 1690879629.0640087-CDS-C-linearis_contig10:381997..382243 1690879629.0640087-CDS-C-linearis_contig10:381997..382243 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig10 381998..382243 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.447.1
>prot_C-linearis_contig10.447.1 ID=prot_C-linearis_contig10.447.1|Name=mRNA_C-linearis_contig10.447.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=237bp
MTSPHEAGGDGVEEHGGSSRSSSRGGAGDEMARLARAEAEFRFAVQREQA back to top mRNA from alignment at C-linearis_contig10:376824..384331+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.447.1 ID=mRNA_C-linearis_contig10.447.1|Name=mRNA_C-linearis_contig10.447.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=7508bp|location=Sequence derived from alignment at C-linearis_contig10:376824..384331+ (Chordaria linearis ClinC8C monoicous)TCGCTTTTCCCCAGTTCGACCACCGCCGTTACCTGCCCTTCGAGGAGGCG
ACAGCTCCCACCACTCTGTTTTTTGGGTCTTTGGGTTCCATCTTCTCGCC
GCTCGGCTGGTACGAGCAATAGGGTCTGCCCGTTACGATCCGATAGACGG
ACACACATCTCTCGCGAATCGACACAGGTTCAGAGCGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGCTGCTGAGAGGGAGCCAGCAAAAAAAACAGA
CACCTCGCCTGCCTTTTTATCTCGAGTGCTGGGCAGAGGCAGGCAGGAGT
AAAGAGGCACGGGCGTGGATTCTTGCTGTCTAGCTTTCCAGCCTACGCTA
GCAGCCGTGTTCAATTCCGCCAAGACCGTGAGAGGCAGAGGACGTCACGC
TGCGAGCTTTTGCTTTTCGAGAGAGCGCAAAGCAGCCTCCGTCTTTTGGT
CTTTTTCTGCCGTCTCGTTCTTGGAGAGCTAAACGCGTGCACAACCAGAG
AGGACCTCTAGAAGAAGAAAGGGAGAAGCAAGGCTGGGCAGAGACAACCG
GCGTGCCTCCTGTGGATGCGCGCTGCTCCCCAACGAACAACTATCTCCAG
AGTCGTACCCGGAGCAGCGCCCAAGCTCCGTTCAGTTTGTTTTATCAAGA
CACCTACATACTTTCGCGAAA ATGACTTCGCCACACGAAGCCGGCGGCGA
CGGGGTCGAAGAACACGGTGGTAGTAGTAGAAGTAGTAGTCGAGGCGGGG
CCGGAGACGAGATGGCAAGGCTGGCCAGAGCGGAGGCGGAGTTCCGGTTC
GCCGTGCAGCGGGAGCAGGCGGCGCTAATGGCATCGGGGCTAGGTCGTAT
CGAG GTATGTATGTACACATACACAAGAGTCAGTAGTACTGAATACAAGC
TGATAGACAGGAGGGCTAACCCAGGGGATTAGCCTTCCTGTCTGTGGGAT
TAGCCCTCCTGTCTTATCAAAAGAAATGTCGAGGGTTCGAATCCCAACAA
CGTCGGATTTTTTTCTCGCATCTGAAAAACTGGGAACAGAGCAGAAAAAA
GCCACTTGTTCTCCCACGGAGTCACACGTCTCATTACGTATCAGCGCCTG
GCAAGGGGGGCACATCCCCGGAGAGATGGTGAAGGGACTTCGGTTCCCGA
GACATTTATTTTGATAGACAGGAGGGCTAATCCCCTGCACTAAAGTAGTC
AGCCCGGCTGACTACTTTAGTGCAGGGGATTAGCCCTCCTGTCTATCAAC
AGCGGTATGTACGCGGTATCAGATGTTTTTTTGTTTTTTTTGCTCGCCCA
TTAACGGTCGCCCTGGTGGTCTAGTGGTCTTACCGTAACCATCTAGCATG
CAGGTTCACGGGTTCGAATCCCGGCGCAAGCGACTTTTTCTCACACAAAG
GGACTTTTTCCCAGGGTGATACGTGGTGTTGTGATGGGATGGTATACCAT
CACTTGATGGGATGGTAATGGGATGGGATGGTAATCGGGTCGGAATTTTA
ATATTGGTACCATCACAAGATACCATCCCATCACCACCGCGCCAGTCGGA
GACACCATCGTATAGAGGTGGTGGTTTTTGAACGCATCCCATCCCATCTA
GTTTCTAATTCACCATCACAGCTATTGAAGTTACCACCATCCCATCGACA
ATACAGTCTTCTCCCACCAGTTCCTCTTTTCAGAGATCTACCACGAATAT
CACCCCCTACGTCTCGGCACCTCCCCCCGCCATCCAGCACAACGTACTTT
CTGAGGGAGGGGTGTGTAAGGAGGGCAGAAAATGTGTGGAATAGGGGGGG
GTAAGGGAGGGTAGGGGGTTCGACCCGCTACACACACACACACACACGCA
ACACGTGGCAGGGACCGTTGTAGTGCCTGCCCGCTGGCCGCATGTGGGTT
TTGTTTACTAATTTAGCACGTTTGTACGCAAGCGTAGATACCACCATCAG
TTGTGAAGCGGAGAGGAACTTTTCCGGCCTCAAGCAGGTCCTTATATTAG
TGACTCGTGTCCCGGTACCCTGCCCCGTAACATCGAGCAGATAGTCTAGA
TGCTGTTGCTCCGGCTTCACAGGCGCCTCATCCCCGGCTTTGCGAAAGTA
TCATAGAGCAAGAGCTAGCCGCATTGAAGGCAAAGCACGATGCAATCGCA
AAAGCGGCGGTTTGCCGCCCAGCAAGCCAGGGAAGGTAACACACTGCTGT
CACCTTGATTGAACAAGTAGGGTTGCTGTCCGACGTTTCAACTAACAGTT
TTTTGTTTTTTGCTTTGTTTTTCACTCGTATCATATACTCCTGAGTCTTT
ATTCAGTAGGTATTTTTGAAGCGTATTGTGGCCAGAACTTCAAGAACACA
GCAGTAATAGCAGTATATTTTAGAACTTCGGCTGGAGTTAGTTGAGTGCC
TGCAGTTGGCTGTGGTCTAAAGAACGATATTTTAAAGAACACCCTGTTAT
TGCTGTTTTTGACAAGGTGGGCAGACGGAAGTAGATTAGTCTCGTGCTAC
ACGCGGTTGTAGTATTTTCGTATTTTCCATTTCCAGGGCGGCAACTTATT
TGAATATTTTTATTGTTTCCTGCTGTTTATTTGTCTGTGTATGCAAGCGG
GAGGATGGGTAGCACTGGTAACACCTTTGTGTACCAGAGTTCTTTGTGTT
ACCATCTTCTCGCCACCACGCCAAGGCAAAAGCTCCCCCATCCCATCACA
CTCACTCACCGTCCCACCAGATATCATTCCATCCCATCACGCGAAACCAC
CATTTACCATCCCATCCCATCACGACAAGTACGATACCACCCCATCTCAT
CGCATTACCATCAGATGTGCGCGCAAATACCATCCCATCCCACGTGATGG
GAGGCCTCAAAATTCAGACGCCACGTACCACCCTGTTTTTTTCGCTCTGT
TTCGTTCCTGTCATTGGAAAGCGCTTAGTTCGCGTGTACAAGTACACTTG
AGGCAGAGACGGCTGAAACTCTCTCGCGTTAAAAATTACCAGGCAAGCAC
CGCAGAAGGTGGGTGGGGGCCTCAGGGAGAGGAGCCTTCTGTGTGACACG
GTTCAGATGTTCTGGCAAGATGGTTAGCGTGGCAAGGCGCCCCTGCGAAG
TCTGGAAATAAATGTCAAGACGAAAAAAAAAAATGTTTTTTCGTACTGTA
GCCTGCCTCCTCCTCTTCACTACAACTAGCTAGGCTACCATCCAGGGTCA
CACATGATGTGTTCGTGTGTTTTGTTTGTTTGTTTGTTTGTTTCTCACAT
TCTTAGACTACCTCTCTATTCCAGGACATCCATGGGAGCCCGTGGTCACA
AAACTGAAAAACAGGGCACACTCGACGCCGCAAAGAAACTACTCCGTATG
TGTGTACATATGATGATACGAGCATCAGAGAGCGAGAGGAGGGCATAATG
AGTCCGAAACATATGCCCTGTGTGTGTACATGATCGTTTAGGTAGACTAG
ACTTGTGTTCAGTAGGCCGGGAGGCCGGACAGCTGGTGAGAGGTGAGAGG
GTTAGAGACCCTTTCTCCGAACACAGGAGCTTTGAATACTAGTATTAGAC
TATTATTAGTGTAGTGTAGGCTTGATTGCTGTAGGCGTATAGATGATATT
TTGTGATGTGACATGAAATCAACCCTGACCAATCCAAACGCACGTGAGCC
GGGCTCTGCTGAAACGGCGTGGTTGAACATCTTCGAGAACGAAGAGACAC
CAGCCGCCAGCCACAGCGGGCTACTGCCTATCTATTGAGTGTTTAGCGCA
ACAAAGATGACGTTGGATGGTTTTCGATTTTTTCGGCGTGCGGGTTCGGC
AAAGCTAGACAAAGACCTCGCCGTCATCCAACATGTCTAGTCTGGTCTGA
GAGCGTTTCATCATGTCGGTAATGGTAATGGTGCAGGGAAGCCCTGTGTT
GGTATGTTTTGCGGTGTTCGCACGTTGGTGGTTCACAACAGCAGCCAACC
TCGGCAAGGGGGCGATCTCGTCCGATGCGCGCTCGGCCAAAAAGTTGGAA
AGCTTGTCTGCCCTGCTTGTGCATACCGTAGTATTCTGCGATGAATCAGT
CACCCTTATCCCTTTGACCTCCCCACCTTCCCCACTGCCCTCAACATAGG
CGACGGAGGAGCTCCTCAGACGCCTTCGCGACAGCAGCAGTACAATGGGC
GCCAGTGCCGCGGCCGTGAGCAGCGGCGGCAGAAGCGGCAGGAGCAGCGG
TAGCGGTAGCGGCAGCGGCGGTAACGAGGGATCACCTGCTGCCGAGACAG
AGGCTGGGCTAACTGGGGGTGCCCCCCCCGGTCGCCCGGCTGCTGCTGCT
GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTTCGCCAGAATGCTT
CTCCGCCCACGAGCTGGCGACCCTTGTCGAG GTACAGTAGTGCGGTCATG
CAGTCCAAGCTCGAGTAGCTGGTGTTTCGTATTCCCGTCATGCAGTCTGG
AACACTTGCTGAATGGTGTTTGCATTTGAAGTGTGTTCCGGTTGTGGTCG
TGTGTCATGTGTCGTGTGTCATGTGTCGTGTGTCACGTGCCACGTGGTGC
GCGGGGTTGGGTTTGAATCTAGGATGCGGTGTGGCGTTGTTTTCTTTCTC
GCGTTGCCTCCCATGCCTCACCTCTTGCGTTGGAGCCTAGGAGCGTGTGT
TGTCGTTGATGATCGTCCCACGTCCCACGTCCCATGTCCCATGTCCCATA
TTATCTCAGTGCCAGAAAAACCAACGATCCGCTTCTTTTTTCCATGTCTC
GAGTTTCTAGGGCTTTTGCTTTTTGGTCCCAACCCCAGAGCCTCTATCCG
AATTACAAAAAAGTACCAGGCACGTGTCTGTATTCTGCAACCGTTCTAGG
CTGCATGGGTTAGGGTTAGGGTTTTGGGTGTATGTGTCTACAGCAGAACA
GCAGCAGTCCCATGGAAACCCTTGTTTTTTCTTGGAGTCAGGAAGGCAAA
AAAAGACCACCCGCCGCTACCGCCCATTTTGTCAATGCCGTATGTACACA
CGCCAAAGGTAGCCCTCATCGTTACCCCCCGATTCCCCCCCCCTGCCACC
CAACCAACCGCTGTGTACCCCAGCTTTCCTCATCAAATCCTGACTCGCAT
CCTCACACATGAAGTTTTATCTCAGTCTTCGTGGCTTTACATCACCCTCA
CCCTCAACTTGACTAACCCAACAGATCCATGGCTACTCCCACGAGGACGC
AACGAGAGCGCTCACAATCTGCCACGAGATGAGGCGCCTGGAAGCCGCGG
GCATCGGACGCGTGGAGGCGGCGCGGGAGCTCACGAGACGCGTTCTTCGC
GAGGGGCGGGGTAGAGGCGGCGGGGGCGGCGGGGCCGCGCATGGGTCAAG
GGTGACCGCTGCCGCTGGAGGGGTTGCGGGAAGCGGAGGAGGTCTTGGAG
CTCATTCTGTGGTGAGTTGA GACTGAGTTGAGAATA GTTGGGGGGGGGCA
CAGCAGCGGCCGTAGTGCTTTCCGGTGTGTTTTCTTTTTCTTTTTATTCT
CTTTTTTCTTTTTCTTTGCTTGTTGCATGGTAATGAGCACGGAGAGGAAG
ACCTTCGTAGCTTGTTCTCGTCTCGTGGTGACGATGGTTTGTTCACGGGG
GCAGTTTTGTTTTTTTGTTTGGGGTGGGAGGGCTTTTGAGGTGGTCCTGC
ATACTACGGTGATATTGTTTGTTCGGGGGGGCGCTTTAGTCTCTTTTGTT
TGGGGTTGCACCCTCGTCGCTGTCGCTGTCGCTGTCGCTGTCGCTGTCGC
TGTCGATGTCGATGTCGATGTCGATGTCGCCCACCCTTGTTGCGGGTTGC
GGCCGCGTCGACACGATGGGTCGCGTTAGCGTTAGCAGCCCTGCCGTGCA
ATTCTTCTCGCCGTGCTGCTCTTTCCTCTCGTACGAGAATGTTCCAAGAA
ATTTCCGAGAAAATATGGATGTTTGTCCCTGTGATACATCGGGCCTTGTT
CTCTCATGCGTTTTTGGTAACAACGTGGCGGCATTATTTTGTGCCTACCA
ACACTTGCTTTTGTTCGAGAGTTGGGATTGATGGTTGAGTTTTTGTCATC
CTTTTTGTATACGACATGCATGCATACAAGCGCCGTCCCTGAAAATACGC
ATTTATGGTTCCCAGGACGCAAGCAGTTCCGAAGAGCGTGTGCGATCGGT
TGGAAGGAAAGTGGGCGTGATGTTTCCAGCCTGCGACTGAGTCCAACATG
GTCATGGTCACCTCTTTTTTCTGTTCAATGATGTTTTGTTTTGTTCTGTG
GCAGAATTGGTGTTGGTATTGGTATCATGTATTTTCAGAGGTTTTTCGAA
AATGTCGTTCGCCGTTTCCGCCTCTGCTCGACTCGTAGGGGCACCTGCTG
TGTCACCGTACATAAATGCACGTTGACGCTTCTCCCGTGCAACCTCGTCC
GTATCATTTCTTGTATCATCTCTCCTCTCTTCTCGTCTCTCATCTCTTGC
CTCTTGCCTCTTGCCTCTCTCTTCTCTCTCTTGTATCTCTCATCTCATAT
ATCGCGTATCTTTGTATCTCTCGTCTTGCGTCTCTTATCTCTTCTCTCAT
GCGTCCCTTCAACCAGCAGGACAACAGCAGCAGCGAACCACCCACACCAC
CACCAACCGGCATAAGGGCGAGCTCGTCCACGATCGAGACTTCACCTTCG
CCATCTTCATCTCTTCCATCTACTGCGGCTCCTGCTGCTGCGACAGCGGC
GGCGGTGGCGGCGGCGGCGCTTTCGACTTCGGGGCCAGACACACCGCGCC
CGGCAACTTCGGCTGCCACCACCGTTCCGACAAGCTCCAGACAGCAGCAC
CAGTTTCAGCCACCATTACGACTGGCCGGCCGAAAACGGCCCCACACAAG
CGCCACGTCGAACGCTACCACCCTCCCCCCTCACCAGCAGCAGCAACAGC
AGCAGCAGCA GCAGCACCACCACCACCACCAGCACCACCACCACAGGGGA
GGTGTCGTGGAGGCGGGGATGTTTCCCCCACCGTCCCCTCCCCGCGCGGC
GGCGGCGGCGGCGGCGGCGGCAGCAGCAGCGGCGGCGGCAGCCGTGCAAG
GGGCCGTTCAAGTGGCCGAGGACTACGATTGCGACGTTGTGGGCGGCGGG
CGCGTGGTTGCGCCGACGGAGGTATTTGCTGGGACGGTCGTAGCTGCCGG
GAGTAAGGATGGACCCCGCAGCAGCGGCAAGGCCAAGGCAGGCGGTGGCG
GCGGCGTCAGTGTCGGTGCCGCGGGTGCGGAAGGATCCTCCGGCGGTTAC
CTGGTTCTCCCTAAAGCACCACCAGCAGGAGAGGGAGAAGAGGGGAGAGC
CGCGCTTGGGCTTGAACTTAGATCGGCGGCGGCACCGTCGCGCAAGCCGA
CCTTTGTGTCGGCGGTTTCGCGCGAGGAGGACGGGGGCCGCAGCCCGGTC
GTCCTGGTTCCCGAGACCGGCGGTGGCGCGGCCGACTGCAACTACATCCA
CGGCGGCAGTGGTAGCAGCGGCGGTGGGGCAAACCCCGTAGGGGAGGAGG
AGGAGGAG back to top Coding sequence (CDS) from alignment at C-linearis_contig10:376824..384331+
>mRNA_C-linearis_contig10.447.1 ID=mRNA_C-linearis_contig10.447.1|Name=mRNA_C-linearis_contig10.447.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1422bp|location=Sequence derived from alignment at C-linearis_contig10:376824..384331+ (Chordaria linearis ClinC8C monoicous) back to top