mRNA_C-linearis_contig10.443.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig10.443.1 vs. uniprot
Match: A0A6H5JWI1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI1_9PHAE) HSP 1 Score: 336 bits (862), Expect = 1.940e-103 Identity = 203/260 (78.08%), Postives = 217/260 (83.46%), Query Frame = 3 Query: 1683 ALRDDFINRWGDGRDILTYAEGNRRQPRGFKPAQVLATALDPRTKILYGVEDNEKADVWKLVQEEAVKIAVESRNEEKAQGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFMAA--AQAVGDAPAQELGEGADSSTTSLITNPVRAELEAFKASQGSKMYRLDKEGTTLYLDPLDWWRVRCTDFPHLANLARRVLAIPATQAESERLFSCAGNIVTKNRNNLAPTTIELLVLLRHSWKIVEEWEASNNAAAAKKG 2456 + + DFINRWGDGR+IL Y EG RRQP GFKP QVLATALDPRTKILYGV+++EKADVWKLV+EEAVKIAVE+RN E +Q AS XXXXXXXXXXXXXXXXXXXXXXXXXXX AQAVG A +L EGADSS LIT+ VR EL AFK S G KMY DKEG +YLDPLDWWRVRC DFPHLANLARRVLAIPATQAESERLFSCAGNIVTKNRNNLAPTT+ELLVLLRHSWKIVEEWE SN AAAK+G Sbjct: 46 STQPDFINRWGDGRNILIYKEGRRRQPGGFKPVQVLATALDPRTKILYGVDEDEKADVWKLVEEEAVKIAVETRNSENSQRASSQQGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQAVGGARTPQLDEGADSSFVRLITSSVRVELTAFKVSTGIKMYEEDKEGAKVYLDPLDWWRVRCADFPHLANLARRVLAIPATQAESERLFSCAGNIVTKNRNNLAPTTVELLVLLRHSWKIVEEWEQSNTPAAAKRG 305
BLAST of mRNA_C-linearis_contig10.443.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI) HSP 1 Score: 303 bits (777), Expect = 9.410e-88 Identity = 193/449 (42.98%), Postives = 246/449 (54.79%), Query Frame = 3 Query: 1098 CEPSMVKMGRLPE-EGDVCTHIRCCNHRLESTTAIVFNGPGVKKVMALARGVVTRYSTSSQAADRLKQFVKTYLGFENKRVIQDVATRWWSTCSMVARLLELKVAIDKHEAADKLDPLLSAAE*TVLKLILPILEPFGHTQTLLESRNYETGGFVVPFIYDLRNSLEDAMEDLNELPPSSDADVNT-ARAAVMPCVIALRDDFINRWGDGRDILTYAEGNRRQPRGFKPAQVLATALDPRTKILYGVEDNEKADVWKLVQEEAVKIAVESRNEEKAQGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFMAAAQAVGDAPAQELGEGADSSTTSLITNPVRAELEAFKASQGSKMYRLDKEGT---TLYLDPLDWWRVRCTDFPHLANLARRVLAIPATQAESERLFSCAGNIVTKNRNNLAPTTIELLVLLRHSWKIVEEWEAS 2429 CEPSM+K GRL E +G +HI C NHR+ESTT+ VFNG + + LAR +V RY SSQ A RL Q L E V+QDV TRWWST +MV RLL L AI HE+ D++ PLLS + VL+LI PIL PF Q LE Y TG + + +LR LE A+ DL + + A AV P AL DF NRWGDG +IL Y EG RRQP+GFK QV ATALDPR K LYG++ E A VW+ V AV IA+ +KA ++ AAA AD L+ V E+ AFKA+ G +++ + K T ++ +PLD WR + ++P LA LARRVLAIP++QA+SER+FS AG VT R+ L +ELLV LR+ W +V+EW+ S Sbjct: 113 CEPSMIKAGRLLEVDGSTISHIGCSNHRMESTTSSVFNGRSLG-ALGLARTLVGRYKKSSQMAARLVQLCGI-LQMEPLSVMQDVETRWWSTWAMVVRLLYLMKAIKLHESMDEVHPLLSDTDWEVLRLIEPILRPFMKAQKDLEGAQYVTGSMTIGKMAELREGLEAAITDLKAVAQQGLKETTQKAMEAVRPDAEALMADFTNRWGDGSNILEYREGKRRQPQGFKRKQVYATALDPRAKHLYGIQQREHAGVWRAVASAAVDIALGKHAGDKAPASAEKPASDPVQTQPAPLGGGQGASKRPRMSAFE--AAAAXXXXXXXXXXXXXSADEKREQLVAI-VDMEVSAFKAAPGIRVWDMQKTNTGDKKVFNNPLDRWRKKQLEYPLLAALARRVLAIPSSQAQSERVFSTAGLTVTPTRSRLLDENVELLVYLRNVWGVVDEWKKS 556
BLAST of mRNA_C-linearis_contig10.443.1 vs. uniprot
Match: A0A6H5L7Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y8_9PHAE) HSP 1 Score: 299 bits (765), Expect = 1.290e-83 Identity = 166/279 (59.50%), Postives = 184/279 (65.95%), Query Frame = 3 Query: 1098 CEPSMVKMGRL-PEEGDVCTHIRCCNHRLESTTAIVFNGPGVKKVMALARGVVTRYSTSSQAADRLKQFVKTYLGFENKRVIQDVATRWWSTCSMVARLLELKVAIDKHEAADKLDPLLSAAE*TVLKLILPILEPFGHTQTLLESRNYETGGFVVPFIYDLRNSLEDAMEDLNELPPSSDADVNTARAAVMPCVIALRDDFINRWGDGRDILTYAEGNRRQPRGFKPAQVLATALDPRTKILYGVEDNEKADVWKLVQEEAVKIAVESRNEEKAQGAS 1931 CEPSMVKMGRL + V T I CCN+RLEST++IVFNGP VKKVM LARG+VTRY TSSQAADRLKQFVKTYLG +NKRVIQDV T G VVPFIYDLRNSLEDA++DL ELPP SDA+VNTA AAVMPC+ ALRDD+I+RWGDG +IL Y EG RRQP GFKP VLATALDPRTKI YGV+++EKADVWKLVQEEAVKIAVE+RN E +Q S Sbjct: 113 CEPSMVKMGRLLAGDATVSTQIGCCNYRLESTSSIVFNGPRVKKVMVLARGLVTRYPTSSQAADRLKQFVKTYLGVDNKRVIQDVVT----------------------------------------------------------------GSLVVPFIYDLRNSLEDAIDDLVELPPDSDANVNTAWAAVMPCIKALRDDYIDRWGDGHNILIYKEGPRRQPGGFKPVHVLATALDPRTKIPYGVDEDEKADVWKLVQEEAVKIAVETRNAENSQRTS 327
BLAST of mRNA_C-linearis_contig10.443.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE) HSP 1 Score: 288 bits (736), Expect = 3.420e-82 Identity = 178/407 (43.73%), Postives = 220/407 (54.05%), Query Frame = 3 Query: 1098 CEPSMVKMGRLPEEGDV-CTHIRCCNHRLESTTAIVFNGPGVKKVMALARGVVTRYSTSSQAADRLKQFVKTYLGFENKRVIQDVATRWWSTCSMVARLLELKVAIDKHEAADKLDPLLSAAE*TVLKLILPILEPFGHTQTLLESRNYETGGFVVPFIYDLRNSLEDAMEDLNELPPSS-DADVNTARAAVMPCVIALRDDFINRWGDGRDILTYAEGNRRQPRGFKPAQVLATALDPRTKILYGVEDNEKADVWKLVQEEAVKIAVESRNEEKAQGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFMAAAQAVGDAPAQELGEGADSSTTSLITNPVRAELEAFKASQGSKMYRLDKEGTTLYLDPLDWWRVRCTDFPHLANLARRVLAIPATQAESERL 2312 CEPSMVK GRL E G HI C NHR+ESTT+ VFNG + +A AR VV RY SSQ + RL F+ L V+QDV TRWWS+ +M+ RLL L AI HE+ D + P+LS + VL+LI PIL PF Q LE Y TG VP I +LRN LE A+ DL A A AV+P AL +DF+NRWGDG IL Y EG RRQP+GFK QV ATA+DPR K LYG+ E A VW+ V +AV IA E + + + F AAA A A A G + + V E+ +F+ + G ++ +G +Y DPLDWWR R +FPHLA LARRVLAIP++QA SER+ Sbjct: 149 CEPSMVKAGRLLEVGGSNLEHIGCSNHRMESTTSSVFNGKSLG-ALAKARAVVGRYKRSSQMSGRLAVFIGI-LKLSPLSVLQDVETRWWSSWAMIERLLYLMKAIKLHESTDNIAPVLSETDWEVLRLIEPILRPFMQAQKDLEGAKYVTGSMTVPKIGELRNGLEAAIADLRATDRFGISASTREAMEAVLPDAEALWEDFLNRWGDGSSILEYREGKRRQPQGFKLQQVCATAVDPRAKHLYGIRQAEHASVWRAVATKAVDIAAEKFSSDNTATSGSAPAAQPVGTPPVAPGGQGAPKRARLSA----FEAAAAAHAGAAASSAGGQTLDEKREQLASVVDLEVASFQTTPGISIWYWGTDGKKVYNDPLDWWRTRQMEFPHLAALARRVLAIPSSQAHSERV 549
BLAST of mRNA_C-linearis_contig10.443.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE) HSP 1 Score: 297 bits (761), Expect = 4.810e-82 Identity = 215/468 (45.94%), Postives = 284/468 (60.68%), Query Frame = 3 Query: 1098 CEPSMVKMGRLPEEGDVCTHIRCCNHRLESTTAIVFNGPGVKKVMALARGVVTRYSTSSQAADRLKQFVKTYLGFENKRVIQDVATRWWSTCSMVARLLELKVAIDKHEAADKLDPLLSAAE*TVLKLILPILEPFGHTQTLLESRNYETGGFVVPFIYDLRNSLEDAMEDLNELPPSSDADVNTARAAVMPCVIALRDDFINRWGDGRDILTYAEGNRRQPRGFKPAQVLATALDPRTKILYGVEDNEKADVWKLVQEEAVKIAVESRNEEKAQGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFM-----------AAAQAVGDAPAQEL---------------GEGADSSTTSLITNPVRAELE--------AFKASQGSKMYRLDKEGTTLYLDPLDWWRVRCTDFPHLANLARRVLAIPATQAESERLFSCAGNIVTKNRNNLAPTTIELLVLLRHS 2399 CE SMVK GRL EE + TH+ C HRLES T+ F GPGV K +ALARGVVTRY+ SSQA+DRL+Q V + E K V+QDV TRWWST + RL+ L+ I +HE D PLL + VL+L+ +L+PF Q LE+ T V P+I DL++ L++A+E L +++ V A+ V+ C AL+ D RWGD D+L Y EG RRQPRGFK QVLATAL PR+K LYG+E+ E +DVW EAVK+A+E++ E XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX A++ + PA G + + ++P+R ++E AFK + G + +++G + PL+WWRV+ ++P LA+LARRVL IPA QA+SER+FS AG +VTK R + P + L+V LR++ Sbjct: 78 CELSMVKAGRLLEENEGVTHLGCFCHRLESITSQAFGGPGVSKALALARGVVTRYTISSQASDRLEQ-VCDIVQVERKNVVQDVETRWWSTYVSICRLISLRRPITEHEIIDSTPPLLKEKDWEVLQLVESLLKPFMTAQKHLEASKEVTVRLVSPYIADLQDGLDEAVERLQAHSCPAESIVAEAKKDVILCAQALQTDLSRRWGDRTDVLVYTEGPRRQPRGFKKEQVLATALGPRSKSLYGIEETEHSDVWDAGANEAVKVAIEAKATEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQSAGASSSPIPVEPAXXXXXXXXXXXXXXXXXXAHGDKQQSANASSSPLRRQMESIISREVDAFKITPGLAV-SWEEKGQEVRGKPLEWWRVKAREYPKLASLARRVLCIPAFQAQSERVFSSAGLVVTKTRARMDPENVGLMVFLRNT 543
BLAST of mRNA_C-linearis_contig10.443.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE) HSP 1 Score: 239 bits (611), Expect = 1.640e-65 Identity = 157/446 (35.20%), Postives = 223/446 (50.00%), Query Frame = 3 Query: 1098 CEPSMVKMGRLPEEGDVCTHIRCCNHRLESTTAIVFNGPGVKKVMALARGVVTRYSTSSQAADRLKQFVKTYLGFENKRVIQDVATRWWSTCSMVARLLELKVAIDKHEAADKLDPLLSAAE*TVLKLILPILEPFGHTQTLLESRNYETGGFVVPFIYDLRNSLEDAMEDLNELPPSSDADVNTARAAVMPCVIALRDDFINRWGDGRDILTYAEGNRRQPRGFKPAQVLATALDPRTKILYGVEDNEKADVWKLVQEEAVKIAVESRNEEKAQGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFMAAAQAVGDAPAQELGEGADSSTTSLITNPVRAELEAFKASQGSKMYRLDKEGTTLYLDPLDWWRVRCTDFPHLANLARRVLAIPATQAESERLFSCAGNIVTKNRNNLAPTTIELLVLLRHSWKIVEEWEASNN 2435 CEPSMVK GRL EE + TH+ C HRLES T+ F GPGV K +ALAR VVTRY+ SSQA+DRL+Q ++ + E K+V+QDV TRWWST + + RLL L+ I +HE D + PLL + VL+++ P+ +PF +Q E+ T V+P+I DLR+ L++A+E L +++ V A+ V F + ++ +PRGFK QVLATALDPR+K LYG+E+ E +DVW+ V EAVK+A+E++ E Q A A++ + PA + A A G K + +T RVL IPA+Q +SER+FS AG +VTK R + P +EL++ LR+ + V+ W + N Sbjct: 122 CEPSMVKAGRLLEENEGVTHLGCFCHRLESITSQAFGGPGVSKALALARRVVTRYNMSSQASDRLEQ-MRDIVQVERKKVVQDVETRWWSTYASICRLLSLRRPITEHERIDSIPPLLKEKDWEVLQVVEPLSKPFILSQKHREASKDVTVSLVIPYIADLRDELDEAVERLQAHACPAESIVAEAKKDVF---------FAPKHVRPTSVIV-------EPRGFKKKQVLATALDPRSKSLYGIEETEHSDVWEAVANEAVKVAIEAKATEDTQSAG----------------------------------ASSSLIPVEPAAXX----------XXXXXXXXDFAAASAVPGDKQQSANASSST-----------------------SRVLCIPASQPQSERVFSSAGLVVTKTRARMDPENVELMLFLRNVLREVDRWNGNGN 483
BLAST of mRNA_C-linearis_contig10.443.1 vs. uniprot
Match: A0A6H5KVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI1_9PHAE) HSP 1 Score: 236 bits (602), Expect = 1.950e-65 Identity = 128/277 (46.21%), Postives = 170/277 (61.37%), Query Frame = 3 Query: 1098 CEPSMVKMGRLPEEGDVCTHIRCCNHRLESTTAIVFNGPGVKKVMALARGVVTRYSTSSQAADRLKQFVKTYLGFENKRVIQDVATRWWSTCSMVARLLELKVAIDKHEAADKLDPLLSAAE*TVLKLILPILEPFGHTQTLLESRNYETGGFVVPFIYDLRNSLEDAMEDLNELPPSSDADVNTARAAVMPCVIALRDDFINRWGDGRDILTYAEGNRRQPRGFKPAQVLATALDPRTKILYGVEDNEKADVWKLVQEEAVKIAVESRNEEKAQGA 1928 CEP MVK GRL EE + +H+ C HR ES T+ F GPGV K +AL RGVVTRY+ SSQA++RL+Q + E K+V+QDV TRWWST + D + PLL+ + VL+L+ P+L PF Q LE+ T V +I DLR+ L++A+E L +++ V A+ ++ C AL+ D RW DG D+L Y EG RRQPRGFK QVLATALDPR+K LYG+E+ E +DVW+ V EAVK+A+E++ E Q A Sbjct: 66 CEPFMVKAGRLLEENEGVSHLGCFCHRFESITSQAFGGPGVSKALALPRGVVTRYTMSSQASNRLEQMCDI-VQVERKKVVQDVETRWWSTPREI----------------DSIPPLLNEKDWEVLQLVEPLLHPFMTAQKHLEASKGVTVSLVTAYIADLRDELDEAIERLQAYSCPAESIVAEAKKDILRCAPALQTDLSRRWRDGTDVLVYTEGPRRQPRGFKKKQVLATALDPRSKSLYGIEETEHSDVWEAVANEAVKVAIEAKATEDTQSA 325
BLAST of mRNA_C-linearis_contig10.443.1 vs. uniprot
Match: A0A6H5JVE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVE5_9PHAE) HSP 1 Score: 179 bits (454), Expect = 2.210e-46 Identity = 128/167 (76.65%), Postives = 138/167 (82.63%), Query Frame = 3 Query: 1608 DLNELPPSSDADVNTARAAVMPCVIALRDDFINRWGDGRDILTYAEGNRRQPRGFKPAQVLATALDPRTKILYGVEDNEKADVWKLVQEE-AVKIAVESRNEEKAQGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFMAA--AQAVGDAPAQELGEGADSST 2099 DL ELPP SDA+VNTARAAVMPC+ ALRDDFINRWGDGR+IL Y EG RRQP GFKP QVLATALDPRTKIL+GV+++EKADVWKLVQEE AVKIAVE+RN E +Q S XXXXXXXXXXXXXXXXXXXXXXXXXX AQAVG A +LGEGADSST Sbjct: 143 DLAELPPDSDANVNTARAAVMPCIKALRDDFINRWGDGRNILNYKEGPRRQPAGFKPVQVLATALDPRTKILHGVDEDEKADVWKLVQEEEAVKIAVETRNAENSQRTSSQQGPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQAVGGARTPQLGEGADSST 309
BLAST of mRNA_C-linearis_contig10.443.1 vs. uniprot
Match: A0A6H5JPB0_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPB0_9PHAE) HSP 1 Score: 140 bits (352), Expect = 8.650e-34 Identity = 67/74 (90.54%), Postives = 70/74 (94.59%), Query Frame = 3 Query: 2235 TDFPHLANLARRVLAIPATQAESERLFSCAGNIVTKNRNNLAPTTIELLVLLRHSWKIVEEWEASNNAAAAKKG 2456 TDFPHLANLARRVLAIPATQA+SERLFSCAGNIVTKNRNNLAPTT+ELLVLLRHSWKIVEEWE SN AAA +G Sbjct: 152 TDFPHLANLARRVLAIPATQAKSERLFSCAGNIVTKNRNNLAPTTVELLVLLRHSWKIVEEWEQSNTPAAAMRG 225
BLAST of mRNA_C-linearis_contig10.443.1 vs. uniprot
Match: A0A6H5L057_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L057_9PHAE) HSP 1 Score: 132 bits (333), Expect = 1.020e-29 Identity = 70/113 (61.95%), Postives = 87/113 (76.99%), Query Frame = 3 Query: 369 SKPTGAFAYSWTYFECYAKGHLKTSALCKLCLEQQEFDRAKIKYSQSPSNLIRHLNTDFPGHREAYDDCVSRKT--GKSPPTSSRAGEALGAASGSKASPTGIESYFGKDTSG 701 SKP+GA AY+W YFE Y KG+ K A+CKLC+EQ+EF R KIKYSQSPSN++ HL+TDF GH+ A++DC S +T G+S P S+ AG A GA SG KAS GI+SYF KDT+G Sbjct: 264 SKPSGASAYAWRYFEGYVKGNFKAFAVCKLCMEQKEFGREKIKYSQSPSNMLSHLHTDFAGHQAAFEDCTSSRTAAGRSLPVSA-AGAASGAISGPKAS-AGIDSYFIKDTAG 374 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.443.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.443.1 >prot_C-linearis_contig10.443.1 ID=prot_C-linearis_contig10.443.1|Name=mRNA_C-linearis_contig10.443.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=287bp MEDLNELPPSSDADVNTARAAVMPCVIALRDDFINRWGDGRDILTYAEGNback to top mRNA from alignment at C-linearis_contig10:272524..276430- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.443.1 ID=mRNA_C-linearis_contig10.443.1|Name=mRNA_C-linearis_contig10.443.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3907bp|location=Sequence derived from alignment at C-linearis_contig10:272524..276430- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:272524..276430- >mRNA_C-linearis_contig10.443.1 ID=mRNA_C-linearis_contig10.443.1|Name=mRNA_C-linearis_contig10.443.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1722bp|location=Sequence derived from alignment at C-linearis_contig10:272524..276430- (Chordaria linearis ClinC8C monoicous)back to top |