mRNA_C-linearis_contig10.437.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig10.437.1 vs. uniprot
Match: A0A6H5K630_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K630_9PHAE) HSP 1 Score: 132 bits (332), Expect = 3.380e-37 Identity = 71/112 (63.39%), Postives = 86/112 (76.79%), Query Frame = -2 Query: 3 RNPTASQAKERAARGDLNRRLHGGSRANHNRKARRGANFIAFGYRGDIMLPVTEEARCASVRAPSRNSAANVLFPRYFSFDRLGPDPKDESSASSKSTPASAGQATKMFNPF 338
RNPTA+QAKERAARGDLNR L GGSRANHNR +R+G++FIA G RG I+LPVT+E R A++RAPSRN A+ V+F RY S + DP E AS +STPASAGQ +FN +
Sbjct: 9 RNPTATQAKERAARGDLNRGLRGGSRANHNRTSRKGSDFIASGVRGQIILPVTDEERSATMRAPSRNPASAVMFSRYLSVVKPRADPTVEGGASQESTPASAGQTPVVFNSY 120
BLAST of mRNA_C-linearis_contig10.437.1 vs. uniprot
Match: A0A6H5KZP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZP5_9PHAE) HSP 1 Score: 117 bits (294), Expect = 1.510e-30 Identity = 61/97 (62.89%), Postives = 74/97 (76.29%), Query Frame = -2 Query: 3 DLNRRLHGGSRANHNRKARRGANFIAFGYRGDIMLPVTEEARCASVRAPSRNSAANVLFPRYFSFDRLGPDPKDESSASSKSTPASAGQATKMFNPF 293
DLNR LHGGSRANHNR +R+G +FIA G RG I+LPVT+E R A++RAPSRN A+ V+FPRY S + DP E SAS +STPASAGQ +FNP+
Sbjct: 89 DLNRGLHGGSRANHNRTSRKGNDFIASGVRGQIILPVTDEERSATMRAPSRNPASAVMFPRYLSVVKPRADPTVEGSASQESTPASAGQIPVVFNPY 185
BLAST of mRNA_C-linearis_contig10.437.1 vs. uniprot
Match: A0A6H5K5X1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5X1_9PHAE) HSP 1 Score: 120 bits (300), Expect = 6.830e-29 Identity = 64/111 (57.66%), Postives = 80/111 (72.07%), Query Frame = -2 Query: 3 NPTASQAKERAARGDLNRRLHGGSRANHNRKARRGANFIAFGYRGDIMLPVTEEARCASVRAPSRNSAANVLFPRYFSFDRLGPDPKDESSASSKSTPASAGQATKMFNPF 335
NPT ++AKERA RGDL R LHG SRA HN+ AR+G +FIA G RG I+LPVT+ R A++RAPS+N A+ V+FPRY S D+ DP SAS +ST A AGQ +FNP+
Sbjct: 548 NPTCAEAKERAERGDLQRSLHGVSRAKHNQNARKGEDFIASGIRGRIILPVTDAERSATMRAPSKNPASAVMFPRYISIDKPHADPVVGGSASQESTAAPAGQTPVVFNPY 658
BLAST of mRNA_C-linearis_contig10.437.1 vs. uniprot
Match: A0A6H5L2C2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2C2_9PHAE) HSP 1 Score: 111 bits (277), Expect = 2.330e-28 Identity = 57/79 (72.15%), Postives = 67/79 (84.81%), Query Frame = -2 Query: 102 RNPTASQAKERAARGDLNRRLHGGSRANHNRKARRGANFIAFGYRGDIMLPVTEEARCASVRAPSRNSAANVLFPRYFS 338
RNPTA+QAKERAARGDLNR L GGSRANHNR +R+G +FIA G RG I+LPVT+E R A++RAPSRN A+ V+FPRY S
Sbjct: 84 RNPTATQAKERAARGDLNRGLQGGSRANHNRTSRKGNDFIASGVRGQIILPVTDEERSATMRAPSRNPASAVMFPRYLS 162
BLAST of mRNA_C-linearis_contig10.437.1 vs. uniprot
Match: A0A6H5KB63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB63_9PHAE) HSP 1 Score: 104 bits (260), Expect = 1.050e-26 Identity = 53/81 (65.43%), Postives = 63/81 (77.78%), Query Frame = -2 Query: 93 NPTASQAKERAARGDLNRRLHGGSRANHNRKARRGANFIAFGYRGDIMLPVTEEARCASVRAPSRNSAANVLFPRYFSFDR 335
NP A+QAKER ARGDL R LHG SRANHN+ AR+G +FIA G RG IMLPVT+ R A++RAPSRN + V+FPRY S D+
Sbjct: 10 NPIAAQAKERTARGDLQRSLHGVSRANHNKNARKGEDFIASGIRGRIMLPVTDAERSATMRAPSRNPVSAVMFPRYISIDK 90
BLAST of mRNA_C-linearis_contig10.437.1 vs. uniprot
Match: A0A6H5JS87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS87_9PHAE) HSP 1 Score: 104 bits (260), Expect = 6.510e-26 Identity = 54/81 (66.67%), Postives = 63/81 (77.78%), Query Frame = -2 Query: 93 NPTASQAKERAARGDLNRRLHGGSRANHNRKARRGANFIAFGYRGDIMLPVTEEARCASVRAPSRNSAANVLFPRYFSFDR 335
NPTA+QAKERAARGDL R LHG SRANHN+ R+G FIA G RG IMLPVT+ R A++RAPSRNS + V+FPRY S +
Sbjct: 75 NPTAAQAKERAARGDLYRSLHGVSRANHNKNERKGEEFIASGIRGRIMLPVTDAERSATMRAPSRNSVSAVMFPRYISIHK 155
BLAST of mRNA_C-linearis_contig10.437.1 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI) HSP 1 Score: 98.2 bits (243), Expect = 3.790e-21 Identity = 60/112 (53.57%), Postives = 72/112 (64.29%), Query Frame = -2 Query: 3 RNPTASQAKERAARGDLNRRLHGGSRANHNRKARRGANFIAFGYRGDIMLPVTEEARCASVRAPSRNSAANVLFPRYFSFDRLGPDPKDESSASSKSTPASAGQATKMFNPF 338
RNPTA+QAKER+ RGDLNR LHGGSRAN NR AR G +F YRG IML VT+ +VR+ SRNS VL PRY S + L P E+S PA+ G +T + NP+
Sbjct: 927 RNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGDDFNVSDYRGRIMLAVTQAVAAENVRSRSRNSPNAVLCPRYISVEPLAATPVVETSV-----PAAQGSST-IVNPY 1032
BLAST of mRNA_C-linearis_contig10.437.1 vs. uniprot
Match: A0A6H5K6I9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6I9_9PHAE) HSP 1 Score: 96.3 bits (238), Expect = 5.620e-21 Identity = 60/112 (53.57%), Postives = 71/112 (63.39%), Query Frame = -2 Query: 3 RNPTASQAKERAARGDLNRRLHGGSRANHNRKARRGANFIAFGYRGDIMLPVTEEARCASVRAPSRNSAANVLFPRYFSFDRLGPDPKDESSASSKSTPASAGQATKMFNPF 338
RNPTA+QAKER+ RGDLNR LHGGSRAN NR AR G +FI YR IML VT+ +VRA SRNS VL PRY S + L P E+ PA+ G +T + NP+
Sbjct: 255 RNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGNDFIDSDYRSRIMLAVTQAEAAENVRARSRNSPNAVLCPRYISVEPLAAAPVVEAPV-----PAAQGSST-IVNPY 360
BLAST of mRNA_C-linearis_contig10.437.1 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE) HSP 1 Score: 89.0 bits (219), Expect = 6.290e-18 Identity = 50/99 (50.51%), Postives = 63/99 (63.64%), Query Frame = -2 Query: 42 RNPTASQAKERAARGDLNRRLHGGSRANHNRKARRGANFIAFGYRGDIMLPVTEEARCASVRAPSRNSAANVLFPRYFSFDRLGPDPKDESSASSKSTP 338
RNPTA+QAKER ARGD+ R LHG RAN+NR AR+G +F+A GYR ++MLPV E R +RA +++S VL P Y S G P + SA P
Sbjct: 677 RNPTAAQAKERGARGDILRGLHGPCRANYNRNARKGRDFVASGYRAEVMLPVGEGERSVRIRARTKDSDEAVLSPWYISVAAPGATPVADGSAVESGAP 775
BLAST of mRNA_C-linearis_contig10.437.1 vs. uniprot
Match: A0A6H5JTX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX6_9PHAE) HSP 1 Score: 60.5 bits (145), Expect = 2.620e-8 Identity = 43/80 (53.75%), Postives = 48/80 (60.00%), Query Frame = -2 Query: 96 NPTASQAKERAARGDLNRRLHGGSRANHNRKARRGANFIAFGYRGDIMLPVTEEARCASVRAPSRNSAANVLFPRYFSFD 335
NPTA+QAKERAA+ DL R LHG SRANH AR+G +FIA G RG IMLP S R + A L RY S D
Sbjct: 163 NPTAAQAKERAAQEDLQRSLHGISRANH---ARKGEDFIASGIRGRIMLP--------SDRRRAVCYDAGALEERYLSCD 231 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.437.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.437.1 >prot_C-linearis_contig10.437.1 ID=prot_C-linearis_contig10.437.1|Name=mRNA_C-linearis_contig10.437.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=138bp MKGLNIFVAWPAEAGVDLDDALLSSLGSGPSLSKLKYRGNRTFAAEFREGback to top mRNA from alignment at C-linearis_contig10:187153..187566+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.437.1 ID=mRNA_C-linearis_contig10.437.1|Name=mRNA_C-linearis_contig10.437.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=414bp|location=Sequence derived from alignment at C-linearis_contig10:187153..187566+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:187153..187566+ >mRNA_C-linearis_contig10.437.1 ID=mRNA_C-linearis_contig10.437.1|Name=mRNA_C-linearis_contig10.437.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=828bp|location=Sequence derived from alignment at C-linearis_contig10:187153..187566+ (Chordaria linearis ClinC8C monoicous)back to top |