mRNA_C-linearis_contig1.124.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig1.124.1
Unique NamemRNA_C-linearis_contig1.124.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig1.124.1 vs. uniprot
Match: D7FIZ0_ECTSI (GOLD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIZ0_ECTSI)

HSP 1 Score: 254 bits (648), Expect = 1.330e-75
Identity = 141/200 (70.50%), Postives = 148/200 (74.00%), Query Frame = 1 
Query: 1003 KILEASAKSFEEFVDEQLREDGSGQVLRREGGTGLLVPRSKILSQAFIVTPGCCLCWEFRVKDHDLGFGLRRRSQGMGGSTEEDIFELKRYPSGKTFQGRWTA--DGDTSALLIMVFDNSYSCLRPKTLAYKVQVNRPGFDPTAPPRPXXXXXVDTPTVQASQRRSSSPVFGXXXXXXXXXXXXXXXXDTEAFAIDESEG 1596
            +IL ASAKSFEEFVDEQL+EDGSGQVLRREGGTGLLVPR K LSQAFIV PGCCLCWEFRVKD+DLGF LRRR QGMGGSTEEDIFELKRY S +TFQGRWTA  D D  A++IMV+DNSYSCLRPKTLAYK QVNRPG DP AP   XXXXX      Q       S                    DTEAFAIDESEG
Sbjct:   16 QILVASAKSFEEFVDEQLQEDGSGQVLRREGGTGLLVPRGKQLSQAFIVAPGCCLCWEFRVKDYDLGFALRRRFQGMGGSTEEDIFELKRYSSAETFQGRWTANSDSDAPAVVIMVWDNSYSCLRPKTLAYKAQVNRPGIDPAAPXXXXXXXXXXXXXXQPPVAFGGS------------VGSVGGAEDTEAFAIDESEG 203
[Close]
BLAST of mRNA_C-linearis_contig1.124.1 vs. uniprot
Match: D7FIZ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIZ1_ECTSI)

HSP 1 Score: 173 bits (439), Expect = 1.840e-44
Identity = 164/380 (43.16%), Postives = 192/380 (50.53%), Query Frame = 1 
Query:    4 PGFSVPWGRVAPSPDSSDALQGPWGLLQEVLDVVPVLSPSSPTSQQRHPFLHGDRTSSATPSTEERKGFAR-STTATMPSRGRLASASSSSGI----IVDRRQGQQQLQQSH-----------RSPSPSS-PRIVTSPPTPAASTGNTPTHAARQHDPSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXMSGRLPTVDEQLRSASSSGEG----SGLNEPAVEQLKLQEXXXXXXXXXXXXLGASSSASFASRA--------EVAIP------------TGAAE--TPSVGFGGEKGHKFGGPGGDKETGGLV---AAVALREKGSVGGRGYVGKRFIRAAEALSESPQLRRAAGAAATAVSAAADTARVQFTYTSKTIGK 1005
            P  S+PWGRVAPSPDSS  L GPWG LQEV+D + V+SP+SPTS+  HPFL G R SS T + EERKGFAR S+   MP+RGR+A +SS        I D RQ                    RS SPSS PR VTSPPTPAA   NTP        P+A                             S  L  V+                +  NEP V   + +E            LG S+S  F+S A        EVA              +GAA   T S GF  + G +     GD     LV   A + + +  + GGRGYVG+RFI+AAEALSESPQLRRAAGAAATAVSAAA TARVQFTYTS+TIGK
Sbjct:   41 PAPSLPWGRVAPSPDSSQPLPGPWGRLQEVMDEIKVMSPASPTSRVPHPFLSGARPSS-TAAAEERKGFARTSSPLPMPTRGRIAGSSSXXXXXXXRIADSRQXXXXXXXXXXXXXXXXXXXPRSLSPSSSPRQVTSPPTPAALAANTPCETP----PTAVQQPVAPASSLPS----------------SQHLAAVEXXXXXXXXXXXXXXXXADANEPGVHTKQEREEETPPVPVPGLALGYSTSPPFSSAATGTRGAGGEVAATAAPXXXXXXXSDSGAAPVGTASHGFSDQAGEEPEDLRGDDTAEDLVNVRAVLPVEDDAATGGRGYVGQRFIQAAEALSESPQLRRAAGAAATAVSAAAGTARVQFTYTSRTIGK 399
[Close]
BLAST of mRNA_C-linearis_contig1.124.1 vs. uniprot
Match: A0A836CBJ5_9STRA (GOLD domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBJ5_9STRA)

HSP 1 Score: 129 bits (325), Expect = 1.160e-27
Identity = 72/160 (45.00%), Postives = 101/160 (63.12%), Query Frame = 1 
Query:  946 SAAADTARVQFTYTSKTIGKILEASAKSFEEFVDEQLREDGSGQVLRREGGTGLLVPRSKILSQAFIVTPGCCLCWEFRVKDHDLGFGLRRRSQGMGGSTEEDIFELKRYPSGKTFQGRWTADGDTSALLIMVFDNSYSCLRPKTLAYKVQVNRPGFDPT 1425
            SAA DT    +  TS+T+ + +       ++ V E  RE+   +V+R +    L VPR    S  ++V  GC +CWE+RVKD+D+GF +R R Q MGG+ EEDI  + R+ SG+  +G+WTAD D S +LI  +DN +S LR KTLAYKV+V+RPG  PT
Sbjct:  331 SAAKDT----YATTSQTVAEAIALGHIKLDQIVAEADREEFY-EVIRTDALMDLTVPRGGRYSLPYLVQQGCSICWEYRVKDYDIGFAVRLRLQAMGGAIEEDICSMARFGSGEAHRGKWTADEDRSVVLI--WDNKFSMLRSKTLAYKVEVHRPGRPPT 483
[Close]
BLAST of mRNA_C-linearis_contig1.124.1 vs. uniprot
Match: A0A813AZC1_9DINO (Hypothetical protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A813AZC1_9DINO)

HSP 1 Score: 95.1 bits (235), Expect = 3.870e-18
Identity = 52/142 (36.62%), Postives = 77/142 (54.23%), Query Frame = 1 
Query: 1081 LRREGGTGLLVPRSKILSQAFIVTPGCCLCWEFRVKDHDLGFGLRRRSQGMGGSTEEDIFELKRYPSGKTFQGRWTADGDTSALLIMVFDNSYSCLRPKTLAYKVQVNRPGFDPTAPPRPXXXXXVDTPTVQASQRRSSSPV 1506
            ++ +G   L VP     + A+ VT G  L W FRVK+HD+GF +R R Q  GG+ EE++  ++RY +  T  G W AD D +  +I+ FDN YS LR KT+AY V   +P         P      +TP+ + +   S +P+
Sbjct:  128 IKVQGAEELSVPARTEHTCAYHVTKGSTLRWTFRVKEHDVGFAVRMRVQVWGGAQEEEVLAMERYDNKDTISGSWVADEDRT--MILAFDNKYSKLRAKTVAYIVGTEKP---------PVFVPPAETPSQEPAAASSPAPI 258
[Close]
BLAST of mRNA_C-linearis_contig1.124.1 vs. uniprot
Match: A0A813HLX1_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HLX1_POLGL)

HSP 1 Score: 97.1 bits (240), Expect = 7.260e-18
Identity = 51/119 (42.86%), Postives = 69/119 (57.98%), Query Frame = 1 
Query: 1081 LRREGGTGLLVPRSKILSQAFIVTPGCCLCWEFRVKDHDLGFGLRRRSQGMGGSTEEDIFELKRYPSGKTFQGRWTADGDTSALLIMVFDNSYSCLRPKTLAYKVQVNRPGFDPTAPPR 1437
            ++ +G   L VP     + A+ V+ G  L W FRVKDHD+GF +R R Q  GGS EE++  ++RY +  T  G W AD D +  +I+ FDN YS LR KT+AY V   +P     A PR
Sbjct:  267 IKIQGAEELAVPARTEHTCAYHVSKGSTLRWTFRVKDHDIGFAVRMRIQVWGGSQEEEVLSIERYDNADTISGSWVADEDRT--MILAFDNRYSKLRSKTVAYLVGTEKPPVFTEAVPR 383
[Close]
BLAST of mRNA_C-linearis_contig1.124.1 vs. uniprot
Match: A0A812PXX9_9DINO (Hypothetical protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812PXX9_9DINO)

HSP 1 Score: 95.1 bits (235), Expect = 1.680e-17
Identity = 52/142 (36.62%), Postives = 77/142 (54.23%), Query Frame = 1 
Query: 1081 LRREGGTGLLVPRSKILSQAFIVTPGCCLCWEFRVKDHDLGFGLRRRSQGMGGSTEEDIFELKRYPSGKTFQGRWTADGDTSALLIMVFDNSYSCLRPKTLAYKVQVNRPGFDPTAPPRPXXXXXVDTPTVQASQRRSSSPV 1506
            ++ +G   L VP     + A+ VT G  L W FRVK+HD+GF +R R Q  GG+ EE++  ++RY +  T  G W AD D +  +I+ FDN YS LR KT+AY V   +P         P      +TP+ + +   S +P+
Sbjct:  216 IKVQGAEELSVPARTEHTCAYHVTKGSTLRWTFRVKEHDVGFAVRMRVQVWGGAQEEEVLAMERYDNKDTISGSWVADEDRT--MILAFDNKYSKLRAKTVAYIVGTEKP---------PVFVPPAETPSQEPAAASSPAPI 346
[Close]
BLAST of mRNA_C-linearis_contig1.124.1 vs. uniprot
Match: A0A7S1MKL5_ALECA (Hypothetical protein n=2 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1MKL5_ALECA)

HSP 1 Score: 93.6 bits (231), Expect = 3.370e-17
Identity = 52/128 (40.62%), Postives = 72/128 (56.25%), Query Frame = 1 
Query: 1027 SFEEFVDEQLREDGSGQVLRREGGTGLLVPRSKILSQAFIVTPGCCLCWEFRVKDHDLGFGLRRRSQGMGGSTEEDIFELKRYPSGKTFQGRWTADGDTSALLIMVFDNSYSCLRPKTLAYKVQVNRP 1410
            S  E +D   RE+   + ++ +G   L VP     + A+ V  G  L W FRVKDHD+GF +R R Q  GGS EE++  ++RY S  T  G W AD   +  +++ FDN YS LR KT+AY V   +P
Sbjct:  156 SARETLDIAAREE-QWRGIKVQGAEELSVPARTEHTSAYHVAKGSTLRWTFRVKDHDIGFAVRMRVQEWGGSREEEVLGVERYDSTDTISGSWVAD--EAQTIVLAFDNRYSRLRAKTVAYLVGTEKP 280
[Close]
BLAST of mRNA_C-linearis_contig1.124.1 vs. uniprot
Match: A0A7S1AHQ6_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1AHQ6_NOCSC)

HSP 1 Score: 90.5 bits (223), Expect = 9.310e-16
Identity = 46/113 (40.71%), Postives = 66/113 (58.41%), Query Frame = 1 
Query: 1081 LRREGGTGLLVPRSKILSQAFIVTPGCCLCWEFRVKDHDLGFGLRRRSQGMGGSTEEDIFELKRYPSGKTFQGRWTADGDTSALLIMVFDNSYSCLRPKTLAYKVQVNRPGFD 1419
            ++  G   ++VP     +  + V  G  L W FRVKD+D+GFG R R Q  GGS EE++  ++RY S  T  G W AD + +  +++VFDN+YS LR KT+A+ V    P  D
Sbjct:  224 IKIRGAEEIVVPARTEHTSVYHVHKGTTLRWTFRVKDNDIGFGTRIRVQAWGGSKEEEVLAVERYDSADTISGSWVADEERT--MVLVFDNTYSRLRSKTIAFLVGSEVPPAD 334
[Close]
BLAST of mRNA_C-linearis_contig1.124.1 vs. uniprot
Match: A0A1Q9DTX3_SYMMI (GOLD domain-containing protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9DTX3_SYMMI)

HSP 1 Score: 92.4 bits (228), Expect = 1.080e-15
Identity = 47/110 (42.73%), Postives = 66/110 (60.00%), Query Frame = 1 
Query: 1081 LRREGGTGLLVPRSKILSQAFIVTPGCCLCWEFRVKDHDLGFGLRRRSQGMGGSTEEDIFELKRYPSGKTFQGRWTADGDTSALLIMVFDNSYSCLRPKTLAYKVQVNRP 1410
            ++ +G   L VP     + A+ VT G  L W FRVK+HD+GF +R R Q  GG+ EE++  ++RY +  T  G W AD D +  +I+ FDN YS LR KT+AY V   +P
Sbjct:  217 IKVQGAEELSVPARTEHTCAYHVTKGSTLRWTFRVKEHDVGFAVRMRVQVWGGAQEEEVLAMERYDNKDTISGSWVADEDRT--MILAFDNKYSKLRAKTVAYIVGTEKP 324
[Close]
BLAST of mRNA_C-linearis_contig1.124.1 vs. uniprot
Match: A0A812ZCU9_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812ZCU9_9DINO)

HSP 1 Score: 92.8 bits (229), Expect = 1.100e-15
Identity = 47/110 (42.73%), Postives = 66/110 (60.00%), Query Frame = 1 
Query: 1081 LRREGGTGLLVPRSKILSQAFIVTPGCCLCWEFRVKDHDLGFGLRRRSQGMGGSTEEDIFELKRYPSGKTFQGRWTADGDTSALLIMVFDNSYSCLRPKTLAYKVQVNRP 1410
            ++ +G   L VP     + A+ VT G  L W FRVK+HD+GF +R R Q  GG+ EE++  ++RY +  T  G W AD D +  +I+ FDN YS LR KT+AY V   +P
Sbjct:  217 IKVQGAEELSVPARTEHTCAYHVTKGSTLRWTFRVKEHDIGFAVRMRIQVWGGAQEEEVLAMERYDNKDTISGSWVADEDRT--MILAFDNKYSKLRAKTVAYIVGTEKP 324
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig1.124.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIZ0_ECTSI1.330e-7570.50GOLD domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FIZ1_ECTSI1.840e-4443.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CBJ5_9STRA1.160e-2745.00GOLD domain-containing protein n=1 Tax=Tribonema m... [more]
A0A813AZC1_9DINO3.870e-1836.62Hypothetical protein n=1 Tax=Symbiodinium necroapp... [more]
A0A813HLX1_POLGL7.260e-1842.86Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A812PXX9_9DINO1.680e-1736.62Hypothetical protein n=2 Tax=Symbiodinium TaxID=29... [more]
A0A7S1MKL5_ALECA3.370e-1740.63Hypothetical protein n=2 Tax=Alexandrium catenella... [more]
A0A7S1AHQ6_NOCSC9.310e-1640.71Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
A0A1Q9DTX3_SYMMI1.080e-1542.73GOLD domain-containing protein n=1 Tax=Symbiodiniu... [more]
A0A812ZCU9_9DINO1.100e-1542.73Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig1contigC-linearis_contig1:1751387..1755444 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score256.5
Seed ortholog evalue3.3e-65
Seed eggNOG ortholog2880.D7FIZ0
Hectar predicted targeting categoryother localisation
EggNOG OGs2F1MD@1,2T2M0@2759
Ec32 ortholog descriptionGOLD
Ec32 orthologEc-07_005060.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons7
Model size1959
Cds size1959
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927279.0136666-CDS-C-linearis_contig1:1751386..17514761622927279.0136666-CDS-C-linearis_contig1:1751386..1751476Chordaria linearis ClinC8C monoicousCDSC-linearis_contig1 1751387..1751476 +
1690879601.3401327-CDS-C-linearis_contig1:1751386..17514761690879601.3401327-CDS-C-linearis_contig1:1751386..1751476Chordaria linearis ClinC8C monoicousCDSC-linearis_contig1 1751387..1751476 +
1622927279.0247257-CDS-C-linearis_contig1:1752173..17529711622927279.0247257-CDS-C-linearis_contig1:1752173..1752971Chordaria linearis ClinC8C monoicousCDSC-linearis_contig1 1752174..1752971 +
1690879601.3518896-CDS-C-linearis_contig1:1752173..17529711690879601.3518896-CDS-C-linearis_contig1:1752173..1752971Chordaria linearis ClinC8C monoicousCDSC-linearis_contig1 1752174..1752971 +
1622927279.0343335-CDS-C-linearis_contig1:1753181..17532981622927279.0343335-CDS-C-linearis_contig1:1753181..1753298Chordaria linearis ClinC8C monoicousCDSC-linearis_contig1 1753182..1753298 +
1690879601.3593678-CDS-C-linearis_contig1:1753181..17532981690879601.3593678-CDS-C-linearis_contig1:1753181..1753298Chordaria linearis ClinC8C monoicousCDSC-linearis_contig1 1753182..1753298 +
1622927279.0481987-CDS-C-linearis_contig1:1753656..17538391622927279.0481987-CDS-C-linearis_contig1:1753656..1753839Chordaria linearis ClinC8C monoicousCDSC-linearis_contig1 1753657..1753839 +
1690879601.3670306-CDS-C-linearis_contig1:1753656..17538391690879601.3670306-CDS-C-linearis_contig1:1753656..1753839Chordaria linearis ClinC8C monoicousCDSC-linearis_contig1 1753657..1753839 +
1622927279.0611606-CDS-C-linearis_contig1:1754035..17541181622927279.0611606-CDS-C-linearis_contig1:1754035..1754118Chordaria linearis ClinC8C monoicousCDSC-linearis_contig1 1754036..1754118 +
1690879601.3751278-CDS-C-linearis_contig1:1754035..17541181690879601.3751278-CDS-C-linearis_contig1:1754035..1754118Chordaria linearis ClinC8C monoicousCDSC-linearis_contig1 1754036..1754118 +
1622927279.071771-CDS-C-linearis_contig1:1754580..17547011622927279.071771-CDS-C-linearis_contig1:1754580..1754701Chordaria linearis ClinC8C monoicousCDSC-linearis_contig1 1754581..1754701 +
1690879601.3888423-CDS-C-linearis_contig1:1754580..17547011690879601.3888423-CDS-C-linearis_contig1:1754580..1754701Chordaria linearis ClinC8C monoicousCDSC-linearis_contig1 1754581..1754701 +
1622927279.0815647-CDS-C-linearis_contig1:1754877..17554441622927279.0815647-CDS-C-linearis_contig1:1754877..1755444Chordaria linearis ClinC8C monoicousCDSC-linearis_contig1 1754878..1755444 +
1690879601.4004164-CDS-C-linearis_contig1:1754877..17554441690879601.4004164-CDS-C-linearis_contig1:1754877..1755444Chordaria linearis ClinC8C monoicousCDSC-linearis_contig1 1754878..1755444 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig1.124.1prot_C-linearis_contig1.124.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig1 1751387..1755444 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig1.124.1

>prot_C-linearis_contig1.124.1 ID=prot_C-linearis_contig1.124.1|Name=mRNA_C-linearis_contig1.124.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=653bp
SPGFSVPWGRVAPSPDSSDALQGPWGLLQEVLDVVPVLSPSSPTSQQRHP
FLHGDRTSSATPSTEERKGFARSTTATMPSRGRLASASSSSGIIVDRRQG
QQQLQQSHRSPSPSSPRIVTSPPTPAASTGNTPTHAARQHDPSASASAAP
SPSPSSSSSASRLPLPAAVSVSMSGRLPTVDEQLRSASSSGEGSGLNEPA
VEQLKLQEEQQPPVPPPGGALGASSSASFASRAEVAIPTGAAETPSVGFG
GEKGHKFGGPGGDKETGGLVAAVALREKGSVGGRGYVGKRFIRAAEALSE
SPQLRRAAGAAATAVSAAADTARVQFTYTSKTIGKILEASAKSFEEFVDE
QLREDGSGQVLRREGGTGLLVPRSKILSQAFIVTPGCCLCWEFRVKDHDL
GFGLRRRSQGMGGSTEEDIFELKRYPSGKTFQGRWTADGDTSALLIMVFD
NSYSCLRPKTLAYKVQVNRPGFDPTAPPRPPPPTPVDTPTVQASQRRSSS
PVFGSGGGGGASAGGVAGGGDTEAFAIDESEGEGGEPSSSSSSRPAPTYG
VSDKKGGAGQEQEQEKRDCGGAPLSHAEGDAPAKSGSKWEGAEPGFAGGG
KKGSRGRVEEEDNGAAGGSEVSETIKIEHFLAMTKTSGGGGGGGGDGRGP
SK*
back to top

mRNA from alignment at C-linearis_contig1:1751387..1755444+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig1.124.1 ID=mRNA_C-linearis_contig1.124.1|Name=mRNA_C-linearis_contig1.124.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4058bp|location=Sequence derived from alignment at C-linearis_contig1:1751387..1755444+ (Chordaria linearis ClinC8C monoicous)
TCGCCCGGATTTTCTGTACCATGGGGAAGAGTTGCGCCTTCTCCAGACAG
CTCTGACGCGCTCCAGGGACCGTGGGGACTTCTGCAAGAGGTGTGTGTGC
GCGCTCTCATGTTCCGCCTGTTTAAAAAAAAAATGTTTTTTGATTCCCGC
AAATAAAAAAATCCCGTCATCCAAGAAAAACACTCTTTGATACTCTGTTG
TCAAGTGATCGGTTTTTTTTCCTTTGGGTTGAGCGACCGTTTATATCCGA
GAGAAGGCCAAATCTTTTGTCGTTGTGCGTTGCGCTGGGAAGCTTTCTCC
GGTGGACCCAGTGCTTTTTTACTGCGATGTACTCGCGAGTTGGGAGAGCC
TTTGTAAAACCCGTGCAGCATGGTCTTGCGGAGTAATTACAGAGACAGAG
TCGTGCTTCACTCATACTCCGGAGTATTTACTATCGTTTTGAACGTACGC
AACCGGAACGGGGCCTCTTGCCCCTCGGTCATGATTCAACAAGTTTGGAC
GACAGCATTTTTTTTATTTCTTGCCTCAACCACGAGAATTTCAAATTAAC
GTTTTGCCCCTGGACAAAAGATCTATTATTGTTTAACTTGATCGCCGAAT
AAAAATGAGAAATCGTTTCCCGAGCATCGATACTCCTACCGATAAATATG
CGCGACCGACGTCGAGGTGGTATTTTTTATCCCCAGCACTTGTTGGACCT
GTGGTCGAAACTGAAAACCACATCTCCCACCCTCCCCTCCCTCCCTCCCT
CTCCCCACCCCTCCACCATTCTGATACCCGCGAGCAGGTGCTGGACGTGG
TGCCGGTGTTGAGCCCGTCTTCCCCGACTTCCCAGCAGCGGCACCCTTTC
CTTCACGGTGACCGCACGTCATCCGCCACCCCGTCTACTGAAGAGCGCAA
GGGCTTCGCCCGCAGCACGACCGCGACCATGCCGTCCAGGGGCCGCCTCG
CTAGCGCGTCATCTTCATCCGGTATCATCGTCGACCGCCGCCAGGGACAG
CAGCAGCTGCAGCAATCGCACCGCTCTCCGTCCCCATCCTCGCCCCGCAT
AGTCACTTCGCCCCCGACGCCGGCCGCTTCCACGGGTAACACACCGACGC
ATGCTGCCCGCCAGCATGACCCCTCGGCCTCGGCATCAGCAGCACCTTCA
CCATCACCATCCTCATCCTCATCAGCATCTAGGCTACCCTTGCCCGCGGC
CGTGTCCGTGTCCATGTCCGGCCGACTCCCCACCGTCGACGAGCAGCTGC
GATCGGCCTCCTCATCTGGAGAGGGGTCAGGGTTGAACGAGCCCGCTGTT
GAGCAGTTAAAACTGCAGGAAGAGCAGCAACCGCCGGTACCACCGCCGGG
CGGGGCGCTGGGCGCTTCTTCCTCGGCCTCGTTTGCGTCCAGGGCGGAAG
TCGCCATCCCGACGGGAGCGGCCGAAACACCCAGCGTTGGTTTCGGCGGC
GAAAAGGGGCACAAGTTCGGAGGGCCGGGGGGAGACAAGGAGACTGGTGG
ACTCGTGGCAGCGGTTGCGCTGAGGGAGAAAGGCAGCGTCGGTGGGCGAG
GCTATGTGGGGAAGAGATTTATCCGGGCTGCGGAGGTAAGATATGGTTTG
GCAGAACACGAGAAAACCTTTCGGTTGGGAAATTTCATTTTTGGACCCTC
AGTTGACGATTCTATTATATTTTAAGTCGATCTACTTAGGCGCACCCATA
TTTGTCGTGGGCAGACTAACCCAGGAAAGAGGCGAATGTTTCACATCTAA
CACTGCTGTTTTTCCTCTGCTGTTCCAACACGACACACAACACAGGCCCT
GAGCGAGTCACCTCAACTCCGTCGTGCAGCCGGTGCGGCGGCGACTGCTG
TGTCTGCTGCAGCTGACACGGCGAGGGTGCAATTCACCTACACCTCCAAA
ACCATCGGCAAGGTAGGTACACTCATAGATCACACATAAAATCAAACACC
ACAAATCAGAAACAAGACGCGCTGCATGTGATAGTGTTGTTTGTTGCGTT
GCTCGGGCTTCGTTTGGGGAAAATAACTCGGGTTTCTGATGCTGACGGTG
AAGGCTTTGCTGAGATACTGAAACTGACAAAAGGGAGGGAGAAAAAAACT
CTCAGGCAAGAGCAACGGAAACACATCCTTAGCGAACCAGACTAGCGCGA
ATCGAACACCATGATACGCACACCTTGAAATGGAAAAACGTGATCTTGTG
TTGGTTGCTCACGAGCGTTGCTTCGCGCCTTCGTCCGTCGCTTCCCTCTG
CATCCGTGGTGTCGTGTCAGATTCTCGAGGCGAGCGCTAAGTCGTTCGAG
GAGTTCGTGGATGAGCAGCTGCGAGAGGACGGGTCGGGACAGGTGCTGAG
GAGAGAGGGCGGCACGGGGCTCCTTGTTCCCCGTTCGAAGATTCTGTCGC
AGGCCTTCATCGTCACGCCAGGCTGCTGCCTGTGCTGGGAGTTCAGGGTG
AAGGTGAGGGCACCACTGTTGTACTATTAATAGTGCAATACATGCTACAC
GAACAAATCGTAACAGATGCTACATTCGTTGGGTGTTCATCCAAACCCGT
TGTCCCTCGCGCTGGAATCACGGCTTCCTGCCGCGTGACTTAGCACGAAA
TTAACGCCCTGCGTTTGGCGTCGACTGTCGTACGGGAATCGAAACTCAGG
ACCACGACCTCGGCTTCGGGCTGCGGCGCCGCTCTCAAGGGATGGGCGGG
TCGACAGAGGAAGACATCTTCGAGCTTAAGCGGTAGGGTCGATTAATTCA
GTCGGGATTTTTTTCATGATGACTGGACGAAAAACAAAGAAGTATAGTTT
GCCACCGGCAGAGTTACCTAGGCGAAAGTTGAAAGGGGAAGATCAAAACT
AAATAGGTTCTCGTCATTTTGTTGTGTTCGGGCTCGAGCCGAGTGCTATT
AGTACAGGTGATAACGTCTTGGGCGGTGATACACGTATACCCGCCACAGT
TTCTTTGCCCAACGTTTGCGTATCGCGTCGTTCAATGAACCAGGCTTGGC
GGCAAGAAACGGTTCGTCCCCTTCACCGAAGAACTTGATCACAGTCAACC
AAAGCAAAACTAGTACGGTCGTCCTCAAGCGCTTTGTGACGCTTTCCCCC
ATTTTCATCAAACACCCCCGAGCTTCGTTTTACTTCGGCGGGGGAATGGC
TGACAATTTTGTTTGTATCTTCCTTCCGCTCTTGTGTACCGCAGGTACCC
CTCTGGGAAAACTTTTCAAGGACGGTGGACGGCGGATGGAGATACTTCGG
CTTTGCTCATCATGGTATTCGACAACTCTTACAGTTGCCTGCGCCCCAAG
ACCCTCGCCTACAAGGTTAGTCCCTGGTAGATAAGTCATGTGATTCAAGC
ACAATACCTAGCTGGAGGACCCGGTTGCCCGTAAACGTTTGACGCTAGCT
GCAGCCTAACCGTTAACTTTTTAAGTTGACCTTCTTTTTTTTCGTGCAAA
CGCGTGATAACCTCCCCCCCATATCATTTGCTCTGCACCAGGTCCAGGTG
AATCGCCCAGGGTTCGACCCCACGGCGCCCCCGCGCCCGCCTCCGCCGAC
GCCGGTGGACACGCCTACCGTACAAGCCTCCCAACGCCGTAGCAGCAGCC
CGGTGTTCGGCAGCGGCGGCGGCGGCGGCGCCAGCGCGGGCGGAGTAGCG
GGCGGAGGGGACACGGAGGCCTTCGCGATCGACGAGTCGGAAGGTGAAGG
TGGAGAGCCTTCCTCTTCCTCTTCCTCTCGCCCCGCACCGACCTACGGCG
TCAGCGACAAGAAGGGGGGGGCAGGACAAGAGCAAGAGCAAGAAAAGCGT
GACTGTGGTGGTGCGCCGTTGTCTCATGCCGAGGGTGACGCGCCGGCAAA
GTCGGGGTCTAAGTGGGAGGGTGCTGAACCAGGTTTTGCTGGAGGCGGAA
AGAAAGGTAGCAGGGGTAGGGTAGAGGAGGAAGACAACGGGGCGGCAGGT
GGTTCAGAAGTCTCAGAAACGATCAAGATCGAACATTTTTTGGCCATGAC
TAAGACAAGTGGTGGTGGTGGTGGTGGTGGTGGCGATGGTAGGGGTCCGT
CAAAGTGA
back to top

Coding sequence (CDS) from alignment at C-linearis_contig1:1751387..1755444+

>mRNA_C-linearis_contig1.124.1 ID=mRNA_C-linearis_contig1.124.1|Name=mRNA_C-linearis_contig1.124.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3918bp|location=Sequence derived from alignment at C-linearis_contig1:1751387..1755444+ (Chordaria linearis ClinC8C monoicous)
TCGCCCGGATTTTCTGTACCATGGGGAAGAGTTGCGCCTTCTCCAGACAG
CTCTGACGCGCTCCAGGGACCGTGGGGACTTCTGCAAGAGTCGCCCGGAT
TTTCTGTACCATGGGGAAGAGTTGCGCCTTCTCCAGACAGCTCTGACGCG
CTCCAGGGACCGTGGGGACTTCTGCAAGAGGTGCTGGACGTGGTGCCGGT
GTTGAGCCCGTCTTCCCCGACTTCCCAGCAGCGGCACCCTTTCCTTCACG
GTGACCGCACGTCATCCGCCACCCCGTCTACTGAAGAGCGCAAGGGCTTC
GCCCGCAGCACGACCGCGACCATGCCGTCCAGGGGCCGCCTCGCTAGCGC
GTCATCTTCATCCGGTATCATCGTCGACCGCCGCCAGGGACAGCAGCAGC
TGCAGCAATCGCACCGCTCTCCGTCCCCATCCTCGCCCCGCATAGTCACT
TCGCCCCCGACGCCGGCCGCTTCCACGGGTAACACACCGACGCATGCTGC
CCGCCAGCATGACCCCTCGGCCTCGGCATCAGCAGCACCTTCACCATCAC
CATCCTCATCCTCATCAGCATCTAGGCTACCCTTGCCCGCGGCCGTGTCC
GTGTCCATGTCCGGCCGACTCCCCACCGTCGACGAGCAGCTGCGATCGGC
CTCCTCATCTGGAGAGGGGTCAGGGTTGAACGAGCCCGCTGTTGAGCAGT
TAAAACTGCAGGAAGAGCAGCAACCGCCGGTACCACCGCCGGGCGGGGCG
CTGGGCGCTTCTTCCTCGGCCTCGTTTGCGTCCAGGGCGGAAGTCGCCAT
CCCGACGGGAGCGGCCGAAACACCCAGCGTTGGTTTCGGCGGCGAAAAGG
GGCACAAGTTCGGAGGGCCGGGGGGAGACAAGGAGACTGGTGGACTCGTG
GCAGCGGTTGCGCTGAGGGAGAAAGGCAGCGTCGGTGGGCGAGGCTATGT
GGGGAAGAGATTTATCCGGGCTGCGGAGGTGCTGGACGTGGTGCCGGTGT
TGAGCCCGTCTTCCCCGACTTCCCAGCAGCGGCACCCTTTCCTTCACGGT
GACCGCACGTCATCCGCCACCCCGTCTACTGAAGAGCGCAAGGGCTTCGC
CCGCAGCACGACCGCGACCATGCCGTCCAGGGGCCGCCTCGCTAGCGCGT
CATCTTCATCCGGTATCATCGTCGACCGCCGCCAGGGACAGCAGCAGCTG
CAGCAATCGCACCGCTCTCCGTCCCCATCCTCGCCCCGCATAGTCACTTC
GCCCCCGACGCCGGCCGCTTCCACGGGTAACACACCGACGCATGCTGCCC
GCCAGCATGACCCCTCGGCCTCGGCATCAGCAGCACCTTCACCATCACCA
TCCTCATCCTCATCAGCATCTAGGCTACCCTTGCCCGCGGCCGTGTCCGT
GTCCATGTCCGGCCGACTCCCCACCGTCGACGAGCAGCTGCGATCGGCCT
CCTCATCTGGAGAGGGGTCAGGGTTGAACGAGCCCGCTGTTGAGCAGTTA
AAACTGCAGGAAGAGCAGCAACCGCCGGTACCACCGCCGGGCGGGGCGCT
GGGCGCTTCTTCCTCGGCCTCGTTTGCGTCCAGGGCGGAAGTCGCCATCC
CGACGGGAGCGGCCGAAACACCCAGCGTTGGTTTCGGCGGCGAAAAGGGG
CACAAGTTCGGAGGGCCGGGGGGAGACAAGGAGACTGGTGGACTCGTGGC
AGCGGTTGCGCTGAGGGAGAAAGGCAGCGTCGGTGGGCGAGGCTATGTGG
GGAAGAGATTTATCCGGGCTGCGGAGGCCCTGAGCGAGTCACCTCAACTC
CGTCGTGCAGCCGGTGCGGCGGCGACTGCTGTGTCTGCTGCAGCTGACAC
GGCGAGGGTGCAATTCACCTACACCTCCAAAACCATCGGCAAGGCCCTGA
GCGAGTCACCTCAACTCCGTCGTGCAGCCGGTGCGGCGGCGACTGCTGTG
TCTGCTGCAGCTGACACGGCGAGGGTGCAATTCACCTACACCTCCAAAAC
CATCGGCAAGATTCTCGAGGCGAGCGCTAAGTCGTTCGAGGAGTTCGTGG
ATGAGCAGCTGCGAGAGGACGGGTCGGGACAGGTGCTGAGGAGAGAGGGC
GGCACGGGGCTCCTTGTTCCCCGTTCGAAGATTCTGTCGCAGGCCTTCAT
CGTCACGCCAGGCTGCTGCCTGTGCTGGGAGTTCAGGGTGAAGATTCTCG
AGGCGAGCGCTAAGTCGTTCGAGGAGTTCGTGGATGAGCAGCTGCGAGAG
GACGGGTCGGGACAGGTGCTGAGGAGAGAGGGCGGCACGGGGCTCCTTGT
TCCCCGTTCGAAGATTCTGTCGCAGGCCTTCATCGTCACGCCAGGCTGCT
GCCTGTGCTGGGAGTTCAGGGTGAAGGACCACGACCTCGGCTTCGGGCTG
CGGCGCCGCTCTCAAGGGATGGGCGGGTCGACAGAGGAAGACATCTTCGA
GCTTAAGCGGACCACGACCTCGGCTTCGGGCTGCGGCGCCGCTCTCAAGG
GATGGGCGGGTCGACAGAGGAAGACATCTTCGAGCTTAAGCGGTACCCCT
CTGGGAAAACTTTTCAAGGACGGTGGACGGCGGATGGAGATACTTCGGCT
TTGCTCATCATGGTATTCGACAACTCTTACAGTTGCCTGCGCCCCAAGAC
CCTCGCCTACAAGGTACCCCTCTGGGAAAACTTTTCAAGGACGGTGGACG
GCGGATGGAGATACTTCGGCTTTGCTCATCATGGTATTCGACAACTCTTA
CAGTTGCCTGCGCCCCAAGACCCTCGCCTACAAGGTCCAGGTGAATCGCC
CAGGGTTCGACCCCACGGCGCCCCCGCGCCCGCCTCCGCCGACGCCGGTG
GACACGCCTACCGTACAAGCCTCCCAACGCCGTAGCAGCAGCCCGGTGTT
CGGCAGCGGCGGCGGCGGCGGCGCCAGCGCGGGCGGAGTAGCGGGCGGAG
GGGACACGGAGGCCTTCGCGATCGACGAGTCGGAAGGTGAAGGTGGAGAG
CCTTCCTCTTCCTCTTCCTCTCGCCCCGCACCGACCTACGGCGTCAGCGA
CAAGAAGGGGGGGGCAGGACAAGAGCAAGAGCAAGAAAAGCGTGACTGTG
GTGGTGCGCCGTTGTCTCATGCCGAGGGTGACGCGCCGGCAAAGTCGGGG
TCTAAGTGGGAGGGTGCTGAACCAGGTTTTGCTGGAGGCGGAAAGAAAGG
TAGCAGGGGTAGGGTAGAGGAGGAAGACAACGGGGCGGCAGGTGGTTCAG
AAGTCTCAGAAACGATCAAGATCGAACATTTTTTGGCCATGACTAAGACA
AGTGGTGGTGGTGGTGGTGGTGGTGGCGATGGTAGGGGTCCGTCAAAGTG
AGTCCAGGTGAATCGCCCAGGGTTCGACCCCACGGCGCCCCCGCGCCCGC
CTCCGCCGACGCCGGTGGACACGCCTACCGTACAAGCCTCCCAACGCCGT
AGCAGCAGCCCGGTGTTCGGCAGCGGCGGCGGCGGCGGCGCCAGCGCGGG
CGGAGTAGCGGGCGGAGGGGACACGGAGGCCTTCGCGATCGACGAGTCGG
AAGGTGAAGGTGGAGAGCCTTCCTCTTCCTCTTCCTCTCGCCCCGCACCG
ACCTACGGCGTCAGCGACAAGAAGGGGGGGGCAGGACAAGAGCAAGAGCA
AGAAAAGCGTGACTGTGGTGGTGCGCCGTTGTCTCATGCCGAGGGTGACG
CGCCGGCAAAGTCGGGGTCTAAGTGGGAGGGTGCTGAACCAGGTTTTGCT
GGAGGCGGAAAGAAAGGTAGCAGGGGTAGGGTAGAGGAGGAAGACAACGG
GGCGGCAGGTGGTTCAGAAGTCTCAGAAACGATCAAGATCGAACATTTTT
TGGCCATGACTAAGACAAGTGGTGGTGGTGGTGGTGGTGGTGGCGATGGT
AGGGGTCCGTCAAAGTGA
back to top